Contig 008249:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028M09Sequence532020609ref|XP_009624540.1|5e-83PREDICTED: villin-2 [Nicotiana tomentosiformis]741008249 (3)emb|CAE17317.1|4e-32villin 2 [Nicotiana tabacum]
JMSF013H15Sequence520009255 (9)759008249 (3)emb|CAE17317.1|3e-32villin 2 [Nicotiana tabacum]
JMSF028I10Sequence625009255 (9)ref|XP_006350184.1|7e-79PREDICTED: villin-2-like [Solanum tuberosum]684008249 (3)emb|CDP14114.1|6e-35unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF013H15+                                                               ACCACCA
                      ____________________________________________________________
consensus                                                                  ACCACCA
 
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rJMSF013H15+          GAAGCAACTCCCACTGCTGCAATTGAGAACGAGAAAGCTTCTGATGCAGTTGAAAATTCC
rJMFF028M09+                                                 TCTGATGCAGTTGAAAATTCC
                      ____________________________________________________________
consensus             GAAGCAACTCCCACTGCTGCAATTGAGAACGAGAAAGCTTCTGATGCAGTTGAAAATTCC
 
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rJMSF013H15+          AAAGAATCTTCTGAAGTCAAGGAAACGGAGGTAGCTGAATCTGTAGTAGAAACCAACTGG
rJMSF028I10+                  TTCTGAAGTCAAGGAAACGGAGGTAGCTGAATCTGTAGTAGAAACCAACTGG
rJMFF028M09+          AAAGAATCTTCTGAAGTCAAGGAAACGGAGGTAGCTGAATCTGTAGTAGAAACCAACTGG
                      ____________________________________________________________
consensus             AAAGAATCTTCTGAAGTCAAGGAAACGGAGGTAGCTGAATCTGTAGTAGAAACCAACTGG
 
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rJMSF013H15+          GCAGAATCGGAGCCAAAGCCAGAGCAAGAACAGGATGACAGCAGTGAATGCAGTCAGACT
rJMSF028I10+          GCAGAATCGGAGCCAAAGCCAGAGCAAGAACAGGATGACAGCAGTGAATGCAGTCAGACT
rJMFF028M09+          GCAGAATCGGAGCCAAAGCCAGAGCAAGAACAGGATGACAGCAGTGAATGCAGTCAGACT
                      ____________________________________________________________
consensus             GCAGAATCGGAGCCAAAGCCAGAGCAAGAACAGGATGACAGCAGTGAATGCAGTCAGACT
 
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rJMSF013H15+          ATATTTAGTTATGAACGGCTAAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTT
rJMSF028I10+          ATATTTAGTTATGAACGGCTAAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTT
rJMFF028M09+          ATATTTAGTTATGAACGGCTAAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTT
                      ____________________________________________________________
consensus             ATATTTAGTTATGAACGGCTAAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTT
 
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rJMSF013H15+          AAGCGGAGAGAGGCTTACCTCTCAGATGAGGAATTCACGACTGTTTTCGGGACAACAAAA
rJMSF028I10+          AAGCGGAGAGAGGCTTACCTCTCAGATGAGGAATTCACGACTGTTTTCGGGACAACAAAA
rJMFF028M09+          AAGCGGAGAGAGGCTTACCTCTCAGATGAGGAATTCACGACTGTTTTCGGGACAACAAAA
                      ____________________________________________________________
consensus             AAGCGGAGAGAGGCTTACCTCTCAGATGAGGAATTCACGACTGTTTTCGGGACAACAAAA
 
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rJMSF013H15+          GAGGCATTCTATAAGTTGCCCAAATGGAAACAAGACATGCTCAAAAGGAAAGTCGATCTC
rJMSF028I10+          GAGGCATTCTATAAGTTGCCCAAATGGAAACAAGACATGCTCAAAAGGAAAGTCGATCTC
rJMFF028M09+          GAGGCATTCTATAAGTTGCCCAAATGGAAACAAGACATGCTCAAAAGGAAAGTCGATCTC
                      ____________________________________________________________
consensus             GAGGCATTCTATAAGTTGCCCAAATGGAAACAAGACATGCTCAAAAGGAAAGTCGATCTC
 
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rJMSF013H15+          TTTTAAATACCTAAAGTCCAATCCACGTGGTCTCTCATGGTGTCTTTGCAGCTCGTCATT
rJMSF028I10+          TTTTAAATACCTAAAGTCCAATCCACGTGGTCTCTCATGGTGTCTTTGCAGCTCGTCATT
rJMFF028M09+          TTTTAAATACCTAAAGTCCAATCCACGTGGTCTCTCATGGTGTCTTTGCAGCTCGTCATT
                      ____________________________________________________________
consensus             TTTTAAATACCTAAAGTCCAATCCACGTGGTCTCTCATGGTGTCTTTGCAGCTCGTCATT
 
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rJMSF013H15+          TGGTTTTGACAATGTTTCTTGCCCGAGCAGCCTACTTTTCGCATAGGTACTTAATGCCTG
rJMSF028I10+          TGGTTTTGACAATGTTTCTTGCCCGAGCAGCCTACTTTTCGCATAGGTACTTAATGCCTG
rJMFF028M09+          TGGTTTTGACAATGTTTCTTGCCCGAGCAGCCTACTTTTCGCATAGGTACTTAATGCCTG
                      ____________________________________________________________
consensus             TGGTTTTGACAATGTTTCTTGCCCGAGCAGCCTACTTTTCGCATAGGTACTTAATGCCTG
 
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rJMSF013H15+          GACTCGGTCGATTGGTATATGCTTTTGGATGACCATAACTCTTGGTAGTTTTGGATTTTG
rJMSF028I10+          GACTCGGTCGATTGGTATATGCTTTTGGATGACCATAACTCTTGGTAGTTTTGGATTTTG
rJMFF028M09+          GACTCGGTCGATTGGTATATGCTTTTGGATGACCATAACTCTTGGTAGTTTTGGATTTTG
                      ____________________________________________________________
consensus             GACTCGGTCGATTGGTATATGCTTTTGGATGACCATAACTCTTGGTAGTTTTGGATTTTG
 
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rJMSF013H15+          ATCCTGTGATGTCTGCTTGAAGAGAACTTATTTTTTATCGCTCTTTTTATTGCTGCTGTG
rJMSF028I10+          ATCCTGTGATGTCTGCTTGAAGAGAACTTATTTTTTATCGCTCTTTTTATTGCTGCTGTG
rJMFF028M09+          ATCCTGTGATGTCTGCTTGAAGAGAACTTATTTTTTATCGCTCTTTTTATTGCTGCTGTG
                      ____________________________________________________________
consensus             ATCCTGTGATGTCTGCTTGAAGAGAACTTATTTTTTATCGCTCTTTTTATTGCTGCTGTG
 
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rJMSF013H15+          CTTGCCATAGTCTGAAGCTTGTAGTTATGAGGACAACCTGGTTATAATTCTTTGATTTGC
rJMSF028I10+          CTTGCCATAGTCTGAAGCTTGTAGTTATGAGGACAACCTGGTTATAATTCTTTGATTTGC
rJMFF028M09+          CTTGCCATAGTCTGAAGCTTGTAGTTATGAGGACAACCTGGTTATAATTCTTTGATTTGC
                      ____________________________________________________________
consensus             CTTGCCATAGTCTGAAGCTTGTAGTTATGAGGACAACCTGGTTATAATTCTTTGATTTGC
 
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rJMSF013H15+          TTAGCATGTCTGTCTGTGATTGGTCGAAGTCGATTATTTTTTCTTTTTTTCTTTCTTAAA
rJMSF028I10+          TTAGCATGTCTGTCTGTGATTGGTCGAAGTCGATTATTTTTTCTTTTTTTCTTTCTTAAA
rJMFF028M09+          TTAGCATGTCTGTCTGTGATTGGTCGAAGTCGATTATTTTTTCTTTTTTTCTTTCTTAAA
                      ____________________________________________________________
consensus             TTAGCATGTCTGTCTGTGATTGGTCGAAGTCGATTATTTTTTCTTTTTTTCTTTCTTAAA
 
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rJMSF013H15+          GATCATTATTTGTTGATCAAAAGGGTGTATAT                            
rJMSF028I10+          GNTCATTATTTGTTGATCAAAAGGGTGTATAT                            
rJMFF028M09+          GATCATTATTTGTTGATCAAAAGGGTGTATATGTATTTTCCTTTCACTGGTATCAGAAAT
                      ____________________________________________________________
consensus             GATCATTATTTGTTGATCAAAAGGGTGTATATGTATTTTCCTTTCACTGGTATCAGAAAT