Contig 008248:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007M19Sequence484003189 (4)emb|CDO98624.1|1e-60unnamed protein product [Coffea canephora]714008248 (2)emb|CDP07714.1|1e-19unnamed protein product [Coffea canephora]
JMFF028J11Sequence554003189 (4)emb|CDO98624.1|3e-67unnamed protein product [Coffea canephora]717008248 (2)emb|CDP07714.1|1e-19unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF007M19+                           CCTTGCGCCCATCGATTACCAGTCGGGGATCAATGCTTCATCG
rJMFF028J11+            TCCCAAGAAAACATCCCTTGCGCCCATCGATTACCAGTCGGGGATCAATGCTTCATCG
                      ____________________________________________________________
consensus               TCCCAAGAAAACATCCCTTGCGCCCATCGATTACCAGTCGGGGATCAATGCTTCATCG
 
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rJMFF007M19+          ACTTTTTGACTCATCTCTTAGAAATAAACCCAAACAAGCGTCCCTCGCCTACNAGAGGCT
rJMFF028J11+          ACTTTTTGACTCATCTCTTAGAAATAAACCCAAACAAGCGTCCCTCGGCTAC-AGAGGCT
                      ____________________________________________________________
consensus             ACTTTTTGACTCATCTCTTAGAAATAAACCCAAACAAGCGTCCCTCGGCTACNAGAGGCT
 
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rJMFF007M19+          CTAAAACACCCTTGGTTATCATATCCTTACGAGCCGATATCATCTTAAGGCAGAAGAGAT
rJMFF028J11+          CTAAAACACCCTTGGTTATCATATCCTTACGAGCCGATATCATCTTAAGGCAGAAGAGAT
                      ____________________________________________________________
consensus             CTAAAACACCCTTGGTTATCATATCCTTACGAGCCGATATCATCTTAAGGCAGAAGAGAT
 
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rJMFF007M19+          TTCTCACGACACTCAATCACCATAGCTGCCCGCTCTCACGCCTCACCCCTCGATTCTGTG
rJMFF028J11+          TTCTCACGACACTCAATCACCATAGCTGCCCGCTCTCACGCCTCACCCCTCGATTCTGTG
                      ____________________________________________________________
consensus             TTCTCACGACACTCAATCACCATAGCTGCCCGCTCTCACGCCTCACCCCTCGATTCTGTG
 
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rJMFF007M19+          ACACTCAACTGCCAAAGCTGTGTGCTCTCACGCTTCACACCCCTCGGTTCTGTGGTGGCA
rJMFF028J11+          ACACTCAACTGCCAAAGCTGTGTGCTCTCACGCTTCACACCCCTCGGTTCTGTGGTGGCA
                      ____________________________________________________________
consensus             ACACTCAACTGCCAAAGCTGTGTGCTCTCACGCTTCACACCCCTCGGTTCTGTGGTGGCA
 
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rJMFF007M19+          ACATGGAGGAATCCACAGCATCCATGGAGGGTGGATCCCAACTTCAATCTGAAAGGAGTT
rJMFF028J11+          ACATGGAGGAATCCACAGCATCCATGGAGGGTGGATCCCAACTTCAATCTGAAAGGAGTT
                      ____________________________________________________________
consensus             ACATGGAGGAATCCACAGCATCCATGGAGGGTGGATCCCAACTTCAATCTGAAAGGAGTT
 
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rJMFF007M19+          CCTACTTTAATCCGCTGGGAAGACGGTGCAGTCAAAGGTCGACTTGAAGACCATGAAGCC
rJMFF028J11+          CCTACTTTAATCCGCTGGGAAGACGGTGCAGTCAAAGGTCGACTTGAAGACCATGAAGCC
                      ____________________________________________________________
consensus             CCTACTTTAATCCGCTGGGAAGACGGTGCAGTCAAAGGTCGACTTGAAGACCATGAAGCC
 
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rJMFF007M19+          CACCTTGAGCACAAGATTGATAATCTTCTCGGTGGAAAGTAAACTCTACTGACTTCTTCG
rJMFF028J11+          CACCTTGAGCACAAGATTGATAATCTTCTCGGTGGAAAGTAAACTCTACTGACTTCTTCG
                      ____________________________________________________________
consensus             CACCTTGAGCACAAGATTGATAATCTTCTCGGTGGAAAGTAAACTCTACTGACTTCTTCG
 
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rJMFF007M19+          TACCAAAATAGGCAAAAAAACATTATAATTGCCCATTAATAAAATATGATCATGTTTCTG
rJMFF028J11+          TACCAAAATAGGCAAAAAAACATTATAATTGCCCATTAATAAAATATGATCATGTTTCTG
                      ____________________________________________________________
consensus             TACCAAAATAGGCAAAAAAACATTATAATTGCCCATTAATAAAATATGATCATGTTTCTG
 
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rJMFF007M19+          GCATATATACATTTTGCCTAGGAACCAACTTTGAACAGCTTATCATATTTGATCTTTTCA
rJMFF028J11+          GCATATATACATTTTGCCTAGGAACCAACTTTGAACAGCTTATCATATTTGATCTTTTCA
                      ____________________________________________________________
consensus             GCATATATACATTTTGCCTAGGAACCAACTTTGAACAGCTTATCATATTTGATCTTTTCA
 
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rJMFF007M19+          AGAATGGAAAAATTGTTGTTAATCTTTACCAGTATAAATTACAGGGTTTTGGCTTTTCTA
rJMFF028J11+          AGAATGGAAAAATTGTTGTTAATCTTTACCAGTATAAATTACAGGGTTTTGGCTTTTCTA
                      ____________________________________________________________
consensus             AGAATGGAAAAATTGTTGTTAATCTTTACCAGTATAAATTACAGGGTTTTGGCTTTTCTA
 
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rJMFF007M19+          GCTCCTACATGGCTACATGCATCAAAAGCACTATGCTTTCTGTATTCTACATTTCT    
rJMFF028J11+          GCTCCTACATGGCTACATGCATCAAAAGCACTATGCTTTCTGTATTCTACATTTCTACCT
                      ____________________________________________________________
consensus             GCTCCTACATGGCTACATGCATCAAAAGCACTATGCTTTCTGTATTCTACATTTCTACCT