| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028F01 | Sequence | 472 | 010769 (3) | emb|CDP13367.1| | 6e-34 | unnamed protein product [Coffea canephora] | 588 | 008247 (3) | emb|CDP13367.1| | 2e-94 | unnamed protein product [Coffea canephora] |
| JMSF007H16 | Sequence | 333 | 010769 (3) | ref|XP_007043927.1| | 9e-11 | Sphingosine-1-phosphate lyase isoform 6 [Theobroma cacao] gb|EOX99758.1| Sphingo | 752 | 008247 (3) | emb|CDP13367.1| | 2e-140 | unnamed protein product [Coffea canephora] |
| JMSF031C10 | Sequence | 683 | 010769 (3) | emb|CDP13367.1| | 8e-70 | unnamed protein product [Coffea canephora] | 777 | 008247 (3) | emb|CDP13367.1| | 5e-152 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF031C10+ TACATGNTGACCTTTGTCTGGGTGGATTTGTATT
____________________________________________________________
consensus TACATGNTGACCTTTGTCTGGGTGGATTTGTATT
. : . : . : . : . : . :
rJMSF031C10+ GCCATTTGCTCGTAAACTTGGGTATCCTGTCCCGCCATTCGATTTCACTGTTCAAGGAGT
rJMSF007H16+ GTAAACTTGGGTATCCTGTCCCGCCATTCGATTTCACTGTTCAAGGAGT
____________________________________________________________
consensus GCCATTTGCTCGTAAACTTGGGTATCCTGTCCCGCCATTCGATTTCACTGTTCAAGGAGT
. : . : . : . : . : . :
rJMSF031C10+ AACCTCGATATCTGTGGATGTACACAAGTACGGATTGGCTCCGAAGGGAACCAGTGTTGT
rJMSF007H16+ AACCTCGATATCTGTGGATGTACACAAGTACGGATTGGCTCCGAAGGGAACCAGTGTTGT
____________________________________________________________
consensus AACCTCGATATCTGTGGATGTACACAAGTACGGATTGGCTCCGAAGGGAACCAGTGTTGT
. : . : . : . : . : . :
rJMSF031C10+ TTTATACAGAAATCACGACATTCGGAAGCATCAATTCGTTGCTGTTACTGAATGGACTGG
rJMSF007H16+ TTTATACAGAAATCACGACATTCGGAAGCATCAATTCGTTGCTGTTACTGAATGGACTGG
____________________________________________________________
consensus TTTATACAGAAATCACGACATTCGGAAGCATCAATTCGTTGCTGTTACTGAATGGACTGG
. : . : . : . : . : . :
rJMSF031C10+ TGGGCTTTATGTTTCTCCCACGATTGCTGGGAGCAGGCCCGGAGGTCTGATTGCTGGAGC
rJMSF007H16+ TGGGCTTTATGTTTCTCCCACGATTGCTGGGAGCAGGCCCGGAGGTCTGATTGCTGGAGC
rJMFF028F01+ TTCTCCCACGATTGCTGGGAGCAGGCCCGGAGGTCTGATTGCTGGAGC
____________________________________________________________
consensus TGGGCTTTATGTTTCTCCCACGATTGCTGGGAGCAGGCCCGGAGGTCTGATTGCTGGAGC
. : . : . : . : . : . :
rJMSF031C10+ TTGGGCAGCGATGATGTCCCTTGGACTGGAAGGTTACCTGGAGAATACTAAGCAGATCAT
rJMSF007H16+ TTGGGCAGCGATGATGTCCCTTGGACTGGAAGGTTACCTGGAGAATACTAAGCAGATCAT
rJMFF028F01+ TTGGGCAGCGATGATGTCCCTTGGACTGGAAGGTTACCTGGAGAATACTAAGCAGATCAT
____________________________________________________________
consensus TTGGGCAGCGATGATGTCCCTTGGACTGGAAGGTTACCTGGAGAATACTAAGCAGATCAT
. : . : . : . : . : . :
rJMSF031C10+ GGAAGCGTCTAAGAGAATTCAGAAAGGAATACAGGAGATTCCAGAATTGTTTGTCATTGG
rJMSF007H16+ GGAAGCGTCTAAGAGAATTCAGAAAGGAATACAGGAGATTCCAGAATTGTTTGTCATTGG
rJMFF028F01+ GGAAGCGTCTAAGAGAATTCAGAAAGGAATACAGGAGATTCCAGAATTGTTTGTCATTGG
____________________________________________________________
consensus GGAAGCGTCTAAGAGAATTCAGAAAGGAATACAGGAGATTCCAGAATTGTTTGTCATTGG
. : . : . : . : . : . :
rJMSF031C10+ AAGGCCTGATATGACTATTATTGCCTTCGGGTCAGATGTTGTAGACATATTTGAAGTCAA
rJMSF007H16+ AAGGCCTGATATGACTATTATTGCCTTCGGGTCAGATGTTGTAGACATATTTGAAGTCAA
rJMFF028F01+ AAGGCCTGATATGACTATTATTGCCTTCGGGTCAGATGTTGTAGACATATTTGAAGTCAA
____________________________________________________________
consensus AAGGCCTGATATGACTATTATTGCCTTCGGGTCAGATGTTGTAGACATATTTGAAGTCAA
. : . : . : . : . : . :
rJMSF031C10+ TGATGTGTTGTCGTCCAAAGGATGGCATTTAAACGCACTGCAGAGACCCAATAGCATTCA
rJMSF007H16+ TGATGTGTTGTCGTCCAAAGGATGGCATTTAAACGCACTGCAGAGACCCAATAGCATTCA
rJMFF028F01+ TGATGTGTTGTCGTCCAAAGGATGGCATTTAAACGCACTGCAGAGACCCAATAGCATTCA
____________________________________________________________
consensus TGATGTGTTGTCGTCCAAAGGATGGCATTTAAACGCACTGCAGAGACCCAATAGCATTCA
. : . : . : . : . : . :
rJMSF031C10+ TATTTGCGTTACACTTCAACATGCATCAGTCGCTCAAGAGTTTGTGAACGATGTCAAAGA
rJMSF007H16+ TATTTGCGTTACACTTCAACATGCATCAGTCGCTCAAGAGTTTGTGAACGATGTCAAAGA
rJMFF028F01+ TATTTGCGTTACACTTCAACATGCATCAGTCGCTCAAGAGTTTGTGAACGATGTCAAAGA
____________________________________________________________
consensus TATTTGCGTTACACTTCAACATGCATCAGTCGCTCAAGAGTTTGTGAACGATGTCAAAGA
. : . : . : . : . : . :
rJMSF031C10+ CGCTGTCCAGACTGTGAAACAAAATCCGGGTCCTATGAGTGGAGGGCTTGCTCCAATATA
rJMSF007H16+ CGCTGTCCAGACTGTGAAACAAAATCCGGGTCCTATGAGTGGAGGGCTTGCTCCAATATA
rJMFF028F01+ CGCTGTCCAGACTGTGAAACAAAATCCGGGTCCTATGAGTGGAGGGCTTGCTCCAATATA
____________________________________________________________
consensus CGCTGTCCAGACTGTGAAACAAAATCCGGGTCCTATGAGTGGAGGGCTTGCTCCAATATA
. : . : . : . : . : . :
rJMSF031C10+ TGGCGCAGCCGGGAGGATACCGGATAGAGTTATGGTTCAAGATCTATTGATAGATTACAT
rJMSF007H16+ TGGCGCAGCCGGGAGGATACCGGATAGAGTTATGGTTCAAGATCTATTGATAGATTACAT
rJMFF028F01+ TGGCGCAGCCGGGAGGATACCGGATAGAGTTATGGTTCAAGATCTATTGATAGATTACAT
____________________________________________________________
consensus TGGCGCAGCCGGGAGGATACCGGATAGAGTTATGGTTCAAGATCTATTGATAGATTACAT
. : . : . : . : . : . :
rJMSF031C10+ GGATGGAACATGCTAGTGTCATTGCTATGTTATACTCCATATATGATTCTTTCTTGTAGT
rJMSF007H16+ GGATGGAACATGCTAGTGTCATTGCTATGTTATACTCCATATATGATTCTTTCTTGTAGT
rJMFF028F01+ GGATGGAACATGCTAGTGTCATTGCTATGTTATACTCCATATATGATTCTTTCTTGTAGT
____________________________________________________________
consensus GGATGGAACATGCTAGTGTCATTGCTATGTTATACTCCATATATGATTCTTTCTTGTAGT
. : . : . : . : . : . :
rJMSF031C10+ GGGAACATATCCCAGAAACTT
rJMSF007H16+ GGGAACATATCCCAGAAACTTTGTATTGATGATTGCCAATGTT
rJMFF028F01+ GGGAACATATCCCAGAAACTTTGTATTGATGATTGCCAATGTTTACAACAAGAACATAAA
____________________________________________________________
consensus GGGAACATATCCCAGAAACTTTGTATTGATGATTGCCAATGTTTACAACAAGAACATAAA