Contig 008244:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019E01Sequence515012872 (2)emb|CDP07415.1|8e-28unnamed protein product [Coffea canephora]768008244 (2)emb|CAN84072.1|3e-120hypothetical protein VITISV_003982 [Vitis vinifera]
JMFF027O24Sequence486012872 (2)emb|CDP07415.1|5e-21unnamed protein product [Coffea canephora]758008244 (2)emb|CAN84072.1|1e-116hypothetical protein VITISV_003982 [Vitis vinifera]

Alignment

This contig is upended


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rJMFF019E01+                   TTAGGAGGTTTCACAAAGGCCGATGATGTGCCACTGGATGTTCGTATGGAA
rJMFF027O24+                                CAAAGGCCGATGATGTGCCACTGGATGTTCGTATGGAA
                      ____________________________________________________________
consensus                      TTAGGAGGTTTCACAAAGGCCGATGATGTGCCACTGGATGTTCGTATGGAA
 
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rJMFF019E01+          CAGCATAGCAAGGTTCTAGAAGATGGAGTTCTTGATCCCGAAACTACTATTGTAGCCATA
rJMFF027O24+          CAGCATAGCAAGGTTCTAGAAGATGGAGTTCTTGATCCCGAAACTACTATTGTAGCCATA
                      ____________________________________________________________
consensus             CAGCATAGCAAGGTTCTAGAAGATGGAGTTCTTGATCCCGAAACTACTATTGTAGCCATA
 
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rJMFF019E01+          TTTCCCTCACCGATGCATTATGCTGGACCAACTGAAGTACAATGGCATGCTAAGGCTCGG
rJMFF027O24+          TTTCCCTCACCGATGCATTATGCTGGACCAACTGAAGTACAATGGCATGCTAAGGCTCGG
                      ____________________________________________________________
consensus             TTTCCCTCACCGATGCATTATGCTGGACCAACTGAAGTACAATGGCATGCTAAGGCTCGG
 
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rJMFF019E01+          ATAAATGCAGGTGCAAATTTCTATATTGTGGGTCGTGATCCTGCTGGTATGGGCCATCCT
rJMFF027O24+          ATAAATGCAGGTGCAAATTTCTATATTGTGGGTCGTGATCCTGCTGGTATGGGCCATCCT
                      ____________________________________________________________
consensus             ATAAATGCAGGTGCAAATTTCTATATTGTGGGTCGTGATCCTGCTGGTATGGGCCATCCT
 
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rJMFF019E01+          ACAGAGAAGAGGGATTTATATGATCCCGATCATGGGAAGAAAGTTTTGAGCATGGCTCCT
rJMFF027O24+          ACAGAGAAGAGGGATTTATATGATCCCGATCATGGGAAGAAAGTTTTGAGCATGGCTCCT
                      ____________________________________________________________
consensus             ACAGAGAAGAGGGATTTATATGATCCCGATCATGGGAAGAAAGTTTTGAGCATGGCTCCT
 
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rJMFF019E01+          GGTTTGGAGAAATTGAACATTTTACCATTCAGGGTGGCAGCGTATGATACAGTGGCAAAG
rJMFF027O24+          GGTTTGGAGAAATTGAACATTTTACCATTCAGGGTGGCAGCGTATGATACAGTGGCAAAG
                      ____________________________________________________________
consensus             GGTTTGGAGAAATTGAACATTTTACCATTCAGGGTGGCAGCGTATGATACAGTGGCAAAG
 
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rJMFF019E01+          GAAATGGCATTTTTTGATCCTTCACGTGCTAAAGATTTCCTCTTCATTTCAGGAACCAAG
rJMFF027O24+          GAAATGGCATTTTTTGATCCTTCACGTGCTAAAGATTTCCTCTTCATTTCAGGAACCAAG
                      ____________________________________________________________
consensus             GAAATGGCATTTTTTGATCCTTCACGTGCTAAAGATTTCCTCTTCATTTCAGGAACCAAG
 
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rJMFF019E01+          ATGCGGACTTATGCAAGAACTGGGGAGAATCCTCCAAACGGTTTTATGTGCCCTCAGGGA
rJMFF027O24+          ATGCGGACTTATGCAAGAACTGGGGAGAATCCTCCAAACGGTTTTATGTGCCCTCAGGGA
                      ____________________________________________________________
consensus             ATGCGGACTTATGCAAGAACTGGGGAGAATCCTCCAAACGGTTTTATGTGCCCTCAGGGA
 
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rJMFF019E01+          TGGAAAGTCCTGGTCAAGTATTACGAGAGCTTACAAGCAGAAGAAAGCGCCCAGAAGTCT
rJMFF027O24+          TGGAAAGTCCTGGTCAAGTATTACGAGAGCTTACAAGCAGAAGAAAGCGCCCAGAAGTCT
                      ____________________________________________________________
consensus             TGGAAAGTCCTGGTCAAGTATTACGAGAGCTTACAAGCAGAAGAAAGCGCCCAGAAGTCT
 
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rJMFF019E01+          GCTGTACTATCCGCTTAGCCACGGTAATATATGGTAGTTCCGCGTTAATTTGTGCAGAAG
rJMFF027O24+          GCTGTACTATCCGCTTAGCCACGGTAATATATGGTAGTTCCGCGTTAATTTGTGCAGAAG
                      ____________________________________________________________
consensus             GCTGTACTATCCGCTTAGCCACGGTAATATATGGTAGTTCCGCGTTAATTTGTGCAGAAG
 
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rJMFF019E01+          TATGCAAATCAAGAAGTCAGCAGAGAAGAACATGAGAGATGTTTCAATTGCTTGTCTCAG
rJMFF027O24+          TATGCAAATCAAGAAGTCAGCAGAGAAGAACATGAGAGATGTTTCAATTGCTTGTCTCAG
                      ____________________________________________________________
consensus             TATGCAAATCAAGAAGTCAGCAGAGAAGAACATGAGAGATGTTTCAATTGCTTGTCTCAG
 
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rJMFF019E01+          CTTTCTAGCGTGAAGATTGATCTCCTATTATCTATACATTCTGTTCTTGTAATATCTATT
rJMFF027O24+          CTTTCTAGCGTGAAGATTGATCTCCTATTATCTATACATTCTGTTCTTGTAATATCTATT
                      ____________________________________________________________
consensus             CTTTCTAGCGTGAAGATTGATCTCCTATTATCTATACATTCTGTTCTTGTAATATCTATT
 
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rJMFF019E01+          CATTTGCGTGATGATGATGAATAATGATGCACAAGAACTGATCTTTCTCCCCAAATA   
rJMFF027O24+          CATTTGCGTGATGATGATGAATAATGATGCACAAGAACTGATCTTTCTCCCCAAATAATA
                      ____________________________________________________________
consensus             CATTTGCGTGATGATGATGAATAATGATGCACAAGAACTGATCTTTCTCCCCAAATAATA