| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027O13 | Sequence | 583 | 006603 (10) | gb|KJB42342.1| | 4e-84 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 761 | 008243 (10) | ref|XP_011080124.1| | 4e-109 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMFF029J07 | Sequence | 447 | 006603 (10) | gb|KJB42342.1| | 1e-59 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 753 | 008243 (10) | ref|XP_011080124.1| | 3e-116 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMFF043H19 | Sequence | 642 | 006603 (10) | gb|KJB42342.1| | 7e-99 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 665 | 008243 (10) | ref|XP_011080124.1| | 4e-88 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMFF047I19 | Sequence | 508 | 006603 (10) | ref|XP_002301843.1| | 2e-63 | hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo | 376 | 008243 (10) | gb|KJB42341.1| | 2e-27 | hypothetical protein B456_007G150200 [Gossypium raimondii] |
| JMFF048E13 | Sequence | 467 | 006603 (10) | gb|KJB42342.1| | 6e-75 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 421 | 008243 (10) | ref|XP_011080124.1| | 5e-57 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF028N15 | Sequence | 629 | 006603 (10) | gb|KJB42342.1| | 1e-101 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 747 | 008243 (10) | ref|XP_011080124.1| | 1e-115 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF032O19 | Sequence | 669 | 006603 (10) | ref|XP_002301843.1| | 7e-107 | hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo | 696 | 008243 (10) | ref|XP_011080124.1| | 5e-85 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF034L13 | Sequence | 661 | 006603 (10) | gb|KJB42342.1| | 1e-100 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 698 | 008243 (10) | ref|XP_011080124.1| | 7e-110 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF048M16 | Sequence | 671 | 006603 (10) | ref|XP_002301843.1| | 1e-107 | hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo | 720 | 008243 (10) | ref|XP_011080124.1| | 3e-114 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF052C22 | Sequence | 629 | 006603 (10) | gb|KJB42342.1| | 1e-101 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 764 | 008243 (10) | ref|XP_011080124.1| | 8e-118 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
This contig is upended
. : . : . : . : . : . :
rJMSF052C22+ AGAATGCGCAAAGCAAAAG
____________________________________________________________
consensus AGAATGCGCAAAGCAAAAG
. : . : . : . : . : . :
rJMSF052C22+ CTACAGCNGAAGAGGCTGTTTTAAGAGAAATTCCAGAGGCAACAATATTGAAACCTGCTG
rJMSF048M16+ AAATTCCAGAGGCAACAATATTGAAACCTGCTG
rJMSF028N15+ AGAGAAATTCCAGAGGCAACAATATTGAAACCTGCTG
rJMSF034L13+ TGAAACCTGCTG
rJMFF029J07+ AAATTCCAGAGGCAACAATATTGAAACCTGCTG
rJMFF027O13+ CAATATTGAANCCTGCTG
____________________________________________________________
consensus CTACAGCNGAAGAGGCTGTTTTAAGAGAAATTCCAGAGGCAACAATATTGAAACCTGCTG
. : . : . : . : . : . :
rJMSF052C22+ TGATGATTGGTACTGAGGATAGAATTTTGAACCCATGGGCACAATNTGCAAAAAATTATG
rJMSF048M16+ TGATGATTGGTACTGAGGATAGAATTTTGAACCCATGGGCACAATTTGCAAAAAATTATG
rJMSF028N15+ TGATGATTGGTACTGAGGATAGAATTTTGAACCCATGGGCACAATTTGCAAAAAATTATG
rJMSF034L13+ TGATGATTGGTACTGAGGATAGAATTTTGAACCCATGGGCACAATTTGCAAAAAATTATG
rJMFF029J07+ TGATGATTGGTACTGAGGATAGAATTTTGAACCCATGGGCACAATTTGCAAAAAATTATG
rJMFF027O13+ TGATGATTGGTACTGAGGATAGAATTTTGAACCCATGGGCACAATTTGCAAAAAATTATG
____________________________________________________________
consensus TGATGATTGGTACTGAGGATAGAATTTTGAACCCATGGGCACAATTTGCAAAAAATTATG
. : . : . : . : . : . :
rJMSF052C22+ GCTTCCTGCCACTTATTGGAGGTGGTACTACAAAGATTCAACCAGTATATGTTANTGATG
rJMSF048M16+ GCTTCCTGCCACTTATTGGAGGTGGTACTACAAAGATTCAACCAGTATATGTTACTGATG
rJMSF028N15+ GCTTCCTGCCACTTATTGGAGGTGGTACTACAAAGATTCAACCAGTATATGTTACTGATG
rJMFF043H19+ ACAAAGATTCAACCAGTATATGTTACTGATG
rJMSF032O19+ CCAGTATATGTTACTGATG
rJMSF034L13+ GCTTCCTGCCACTTATTGGAGGTGGTACTACAAAGATTCAACCAGTATATGTTACTGATG
rJMFF029J07+ GCTTCCTGCCACTTATTGGAGGTGGTACTACAAAGATTCAACCAGTATATGTTACTGATG
rJMFF027O13+ GCTTCCTGCCACTTATTGGAGGTGGTACTACAAAGATTCAACCAGTATATGTTACTGATG
____________________________________________________________
consensus GCTTCCTGCCACTTATTGGAGGTGGTACTACAAAGATTCAACCAGTATATGTTACTGATG
. : . : . : . : . : . :
rJMSF052C22+ TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
rJMSF048M16+ TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
rJMSF028N15+ TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
rJMFF043H19+ TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
rJMSF032O19+ TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
rJMSF034L13+ TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
rJMFF029J07+ TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
rJMFF027O13+ TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
____________________________________________________________
consensus TTGCCTCTGCAATTATTGCTTCATTGAAAGACGACGGTACCAGCATGGGAAAAGTTTATG
. : . : . : . : . : . :
rJMSF052C22+ AACTTGGTGGACCAGAGATTTTCACAGTGCACCAATTGGCTGAGCTTATGTACGACGTGA
rJMSF048M16+ AACTTGGTGGACCAGAGATTTTCACAGTTCACCAATTGGCTGAGCTTATGTACGACGTGA
rJMFF048E13+ TATGTACGACGTGA
rJMSF028N15+ AACTTGGTGGACCAGAGATTTTCACAGTTCACCAATTGGCTGAGCTTATGTACGACGTGA
rJMFF043H19+ AACTTGGTGGACCAGAGATTTTCACAGTGCACCAATTGGCTGAGCTTATGTACGACGTGA
rJMSF032O19+ AACTTGGTGGACCAGAGATTTTCACAGTGCACCAATTGGCTGAGCTTATGTACGACGTGA
rJMSF034L13+ AACTTGGTGGACCAGAGATTTTCACAGTGCACCAATTGGCTGAGCTTATGTACGACGTGA
rJMFF029J07+ AACTTGGTGGACCAGAGATTTTCACAGTGCACCAATTGGCTGAGCTTATGTACGACGTGA
rJMFF027O13+ AACTTGGTGGACCAGAGATTTTCACAGTGCACCAATTGGCTGAGCTTATGTACGACGTGA
____________________________________________________________
consensus AACTTGGTGGACCAGAGATTTTCACAGTGCACCAATTGGCTGAGCTTATGTACGACGTGA
. : . : . : . : . : . :
rJMSF052C22+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
rJMSF048M16+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
rJMFF048E13+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
rJMSF028N15+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
rJMFF043H19+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
rJMSF032O19+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
rJMSF034L13+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
rJMFF029J07+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
rJMFF027O13+ TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
____________________________________________________________
consensus TCCGTGAATGGCCTCGCTATGTGAAGGTTCCTTTCCCAATTGCTAAGGCAATCGCAACAC
. : . : . : . : . : . :
rJMSF052C22+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
rJMSF048M16+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
rJMFF048E13+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
rJMSF028N15+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
rJMFF043H19+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
rJMSF032O19+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
rJMSF034L13+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
rJMFF029J07+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
rJMFF027O13+ CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
____________________________________________________________
consensus CTCGAGAGCTACTGCTCAAGAAAGTTCCGTTTCCACTGCCAACTCCATCAATATTTAATT
. : . : . : . : . : . :
rJMSF052C22+ TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTNG
rJMSF048M16+ TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
rJMFF048E13+ TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
rJMFF047I19+ GATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
rJMSF028N15+ TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
rJMFF043H19+ TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
rJMSF032O19+ TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
rJMSF034L13+ TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
rJMFF029J07+ TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
rJMFF027O13+ TGGATGTGACTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
____________________________________________________________
consensus TGGATGTGATTGAGGCCCTTACCACTGATACACTTGTGTCAGAAAATGCTTTAACATTTG
. : . : . : . : . : . :
rJMSF052C22+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMSF048M16+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMFF048E13+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMFF047I19+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMSF028N15+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMFF043H19+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMSF032O19+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMSF034L13+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMFF029J07+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
rJMFF027O13+ AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
____________________________________________________________
consensus AAGATCTTGGAATTGTCCCACACAAACTGAAGGGATATCCAGTTGAGTATCTTATCCAAT
. : . : . : . : . : . :
rJMSF052C22+ NCCGTAAAGGTGGACCACAATATGGCTNTACAGTTAGTGAAAAAATATCTCCCGATTNTT
rJMSF048M16+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
rJMFF048E13+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
rJMFF047I19+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
rJMSF028N15+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
rJMFF043H19+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
rJMSF032O19+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
rJMSF034L13+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
rJMFF029J07+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
rJMFF027O13+ ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
____________________________________________________________
consensus ACCGTAAAGGTGGACCACAATATGGCTCTACAGTTAGTGAAAAAATATCTCCCGATTCTT
. : . : . : . : . : . :
rJMSF052C22+ ATCCATGAGGTTGTTTGGATATTCAGTTTGAACACAATTGTCACTGTGAGAACAGGTATT
rJMSF048M16+ ATCCATGAGGTTGTTTGGATATTCAGTTTGAACACAATTGTCACTGTGAGAACAGGTATT
rJMFF048E13+ ATCCATGAGGTTGTTTGGATATTCAGTTTGAACACAATTGTCACTGTGAGAACAGGTATT
rJMFF047I19+ ATCCATGAGGT
rJMSF028N15+ ATCCATGAGGTTGTTTGGATATTCAGTTTGAACACAATTGTCACTGTGAGAACAGGTATT
rJMFF043H19+ ATCCATGAGGT
rJMSF032O19+ ATCCATGAGGT
rJMSF034L13+ ATCCATGAGGTTGTTTGGATATTCAGTTTGAACACAATTGTCACTGTGAGAACAGGTATT
rJMFF029J07+ ATCCATGAGGTTGTTTGGATATTCAGTTTGAACACAATTGTCACTGTGAGAACAGGTATT
rJMFF027O13+ ATCCATGAGGTTGTTTGGATATTCAGTTTGAACACAATTGTCACTGTGAGAACAGGTATT
____________________________________________________________
consensus ATCCATGAGGTTGTTTGGATATTCAGTTTGAACACAATTGTCACTGTGAGAACAGGTATT
. : . : . : . : . : . :
rJMSF052C22+ TGTTGCCATGATTGGTTCAGCATATGATATAAATTCTTTTCCAGAACAACATTNTGAATC
rJMSF048M16+ TGTTGCCATGATTGGTTCAGCATATGATATAAATTCTTTTCCAGAACAACATTTTGAATC
rJMFF048E13+ TGTTGCCATGATTGGTTCAGCATATGATATAAATTCTTTTCCAGA
rJMSF028N15+ TGTTGCCATGATTGGTTCAGCATATGATATAAATTCTTTTCCAGAACAACATTTTGAATC
rJMSF034L13+ TGTTGCCATGATTGGTTCAGCATATGATATAAATTCTTTTCCAGAACAACATTTTGAATC
rJMFF029J07+ TGTTGCCATGATTGGTTCAGCATATGATATAAATTCTTTTCCAGAACAACATTTTGAATC
rJMFF027O13+ TGTTGCCATGATTGGTTCAGCATATGATATAAATTCTTTTCCAGAACAACATTTTGAATC
____________________________________________________________
consensus TGTTGCCATGATTGGTTCAGCATATGATATAAATTCTTTTCCAGAACAACATTTTGAATC
. : . : . : . : . : . :
rJMSF052C22+ AGTNGACTAACTGTTTAAGAGCCTT
rJMSF048M16+ AGTTGACTAACTGTTTAAGAGCCTTAT
rJMSF028N15+ AGTTGACTAACTGTTTAAGAGCCTTATTT
rJMSF034L13+ AGTTGACTAACTGTTTAAGAGCCTTA
rJMFF029J07+ AGTTGACTAACTGTTTAAGAGCCTTATTTTCCCCTGAAACAAACCAGGGAATA
rJMFF027O13+ AGTTGACTAACTGTTTAAGAGCCTTATTTTCCCCTGAAACAAACCAGGGAATAAAAAGAG
____________________________________________________________
consensus AGTTGACTAACTGTTTAAGAGCCTTATTTTCCCCTGAAACAAACCAGGGAATAAAAAGAG