Contig 008240:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+                                   TGGGTTGGGGATGCTAGGATGAATTTGTTGGAGTG
rJMFF026L08+                                                  AGGATGAATTTGTTGGAGTG
                      ____________________________________________________________
consensus                                      TGGGTTGGGGATGCTAGGATGAATTTGTTGGAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          TCATTGGGAAAGATGGTCAATCCAGATCAGTTCATCATTAGTATATATGGAGGATGCTAC
rJMFF026L08+          TCATTGGGAAAGATGGTCAATCCAGATCAGTTCATCATTAGTATATATGGAGGATGCTAC
                      ____________________________________________________________
consensus             TCATTGGGAAAGATGGTCAATCCAGATCAGTTCATCATTAGTATATATGGAGGATGCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          CAGAGCAAGCTTAAATGTCTCCTTTACATCACTTCTAAATGGTTGTGGCAGATTACTGGA
rJMFF026L08+          CAGAGCAAGCTTAAATGTCTCCTTTACATCACTTCTAAATGGTTGTGGCAGATTACTGGA
                      ____________________________________________________________
consensus             CAGAGCAAGCTTAAATGTCTCCTTTACATCACTTCTAAATGGTTGTGGCAGATTACTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          AAGATCAATGATGATTTCACCTCACCGTGTGATGAAATGAAATGATGGCTAAGGGTATGG
rJMFF026L08+          AAGATCAATGATGATTTCACCTCACCGTGTGATGAAATGAAATGATGGCTAAGGGTATGG
                      ____________________________________________________________
consensus             AAGATCAATGATGATTTCACCTCACCGTGTGATGAAATGAAATGATGGCTAAGGGTATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          ATCCTGATAAATTAATATATGGTTGTGAAACTATTGGAGAAGGGGCGTTAAGAGAACAAG
rJMFF026L08+          ATCCTGATAAATTAATATATGGTTGTGAAACTATTGGAGAAGGGGCGTTAAGAGAACAAG
                      ____________________________________________________________
consensus             ATCCTGATAAATTAATATATGGTTGTGAAACTATTGGAGAAGGGGCGTTAAGAGAACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          CGAATGAAACATTAGTAGAATCCTTGTGTTAAAATGGGGATATACTGAACTATTGATGTC
rJMFF026L08+          CGAATGAAACATTAGTAGAATCCTTGTGTTAAAATGGGGATATACTGAACTATTGATGTC
                      ____________________________________________________________
consensus             CGAATGAAACATTAGTAGAATCCTTGTGTTAAAATGGGGATATACTGAACTATTGATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          ACTTAATGAAATCGGAAAGCAGGGCTTCTCCCTAGTGTTAATATCTCTAGCACTTCAGTT
rJMFF026L08+          ACTTAATGAAATCGGAAAGCAGGGCTTCTCCCTAGTGTTAATATCTCTAGCACTTCAGTT
                      ____________________________________________________________
consensus             ACTTAATGAAATCGGAAAGCAGGGCTTCTCCCTAGTGTTAATATCTCTAGCACTTCAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          CATGGGTTGAACAGAGTGTATTACCAACCCTATGAAGCAAGCAGCACCAGAAGTAGCTCG
rJMFF026L08+          CATGGGTTGAACAGAGTGTATTACCAACCCTATGAAGCAAGCAGCACCAGAAGTAGCTCG
                      ____________________________________________________________
consensus             CATGGGTTGAACAGAGTGTATTACCAACCCTATGAAGCAAGCAGCACCAGAAGTAGCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          TCGGGTTCAATCCTCTTCACTAAAAGTAAAGAAGTATGGTACGGAAACTTATTTGACGGT
rJMFF026L08+          TCGGGTTCAATCCTCTTCACTAAAAGTAAAGAAGTATGGTACGGAAACTTATTTGACGGT
                      ____________________________________________________________
consensus             TCGGGTTCAATCCTCTTCACTAAAAGTAAAGAAGTATGGTACGGAAACTTATTTGACGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          TGTACATGTGTATGTGTCTGATGATGATATTTGGTAATTAGGAGATGTGGCAGTGCAGTT
rJMFF026L08+          TGTACATGTGTATGTGTCTGATGATGATATTTGGTAATTAGGAGATGTGGCAGTGCAGTT
                      ____________________________________________________________
consensus             TGTACATGTGTATGTGTCTGATGATGATATTTGGTAATTAGGAGATGTGGCAGTGCAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          TGCTGTTGCAGAAGAATGTTGTTTGGTGTAGCAGATGGATGCCAGTTCTCCAAGGTGCAA
rJMFF026L08+          TGCTGTTGCAGAAGAATGTTGTTTGGTGTAGCAGATGGATGCCAGTTCTCCAAGGTGCAA
                      ____________________________________________________________
consensus             TGCTGTTGCAGAAGAATGTTGTTTGGTGTAGCAGATGGATGCCAGTTCTCCAAGGTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          GGTGATCTGGTGTGATTGAATGGACTTCTTTCACTAGATTTATGCTAATCTCAGATTTTT
rJMFF026L08+          GGTGATCTGGTGTGATTGAATGGACTTCTTTCACTAGATTTATGCTAATCTCAGATTTTT
                      ____________________________________________________________
consensus             GGTGATCTGGTGTGATTGAATGGACTTCTTTCACTAGATTTATGCTAATCTCAGATTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029C06+          CTCTTTAGGGCTTGGTTCTTTGAGTATCTTTTTCCATTCTT                   
rJMFF026L08+          CTCTTTAGGGCTTGGTTCTTTGAGTATCTTTTTCCATTCTTTGGCCAGGTTGTGCCCAAC
                      ____________________________________________________________
consensus             CTCTTTAGGGCTTGGTTCTTTGAGTATCTTTTTCCATTCTTTGGCCAGGTTGTGCCCAAC