Contig 008236:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026D15Sequence584008236 (5)ref|XP_010650910.1|5e-44PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein 753008236 (5)ref|XP_010650910.1|2e-55PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein
JMSF012J14Sequence534000660 (4)ref|XP_002525631.1|1e-43villin 1-4, putative [Ricinus communis] gb|EEF36749.1| villin 1-4, putative [Ric792008236 (5)ref|XP_010650910.1|3e-61PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein
JMSF028M04Sequence610000660 (4)ref|XP_002525631.1|6e-57villin 1-4, putative [Ricinus communis] gb|EEF36749.1| villin 1-4, putative [Ric701008236 (5)ref|XP_010650910.1|1e-55PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein
JMSF048E23Sequence681000660 (4)ref|XP_007016120.1|9e-66Villin-like 1 [Theobroma cacao] gb|EOY33739.1| Villin-like 1 [Theobroma cacao]740008236 (5)ref|XP_010650910.1|8e-60PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF026D15- CCGTGCTGGTA
                      ____________________________________________________________
consensus CCGTGCTGGTA
 
. : . : . : . : . : . :
JMFF026D15- CTCAACTGCCATCGGGAAATTTATGTGTGGATAGGACGCAATTCGAGTATTAACTCGAAG
rJMSF012J14+ AAG
                      ____________________________________________________________
consensus CTCAACTGCCATCGGGAAATTTATGTGTGGATAGGACGCAATTCGAGTATTAACTCGAAG
 
. : . : . : . : . : . :
JMFF026D15- CGGGAAGCTATTGATTTTGTCCCGAAAGTTCTTGGTAAGGAGACTCCCATTGGAAAGCTT
rJMSF048E23+ GGAAAGCTT
rJMSF012J14+ CGGGAAGCTATTGATTTTGTCCCGAAAGTTCTTGGTAAGGAGACTCCCATTGGAAAGCTT
                      ____________________________________________________________
consensus CGGGAAGCTATTGATTTTGTCCCGAAAGTTCTTGGTAAGGAGACTCCCATTGGAAAGCTT
 
. : . : . : . : . : . :
JMFF026D15- TCTCCCGATATTCCCATCTATATTATAAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
rJMSF048E23+ TCTCCCGATATTCCCATCTATATTATAAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
rJMSF012J14+ TCTCCCGATATTCCCATCTATATTATAAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
rJMSF028M04+ AATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
rJMFF026D15+ AAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
                      ____________________________________________________________
consensus TCTCCCGATATTCCCATCTATATTATAAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
 
. : . : . : . : . : . :
JMFF026D15- TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
rJMSF048E23+ TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
rJMSF012J14+ TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
rJMSF028M04+ TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
rJMFF026D15+ TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
                      ____________________________________________________________
consensus TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
 
. : . : . : . : . : . :
JMFF026D15- GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
rJMSF048E23+ GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
rJMSF012J14+ GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
rJMSF028M04+ GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
rJMFF026D15+ GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
                      ____________________________________________________________
consensus GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
 
. : . : . : . : . : . :
JMFF026D15- TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
rJMSF048E23+ TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
rJMSF012J14+ TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
rJMSF028M04+ TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
rJMFF026D15+ TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
                      ____________________________________________________________
consensus TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
 
. : . : . : . : . : . :
JMFF026D15- AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
rJMSF048E23+ AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
rJMSF012J14+ AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
rJMSF028M04+ AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
rJMFF026D15+ AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
                      ____________________________________________________________
consensus AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
 
. : . : . : . : . : . :
JMFF026D15- CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
rJMSF048E23+ CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
rJMSF012J14+ CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
rJMSF028M04+ CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
rJMFF026D15+ CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
                      ____________________________________________________________
consensus CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
 
. : . : . : . : . : . :
JMFF026D15- CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
rJMSF048E23+ CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
rJMSF012J14+ CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
rJMSF028M04+ CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
rJMFF026D15+ CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
                      ____________________________________________________________
consensus CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
 
. : . : . : . : . : . :
JMFF026D15- AGCAGTCAGATCGAGGCTGATGCAAATTTGCCA
rJMSF048E23+ AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
rJMSF012J14+ AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
rJMSF028M04+ AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
rJMFF026D15+ AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
                      ____________________________________________________________
consensus AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
 
. : . : . : . : . : . :
rJMSF048E23+ GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
rJMSF012J14+ GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
rJMSF028M04+ GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
rJMFF026D15+ GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
                      ____________________________________________________________
consensus GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
 
. : . : . : . : . : . :
rJMSF048E23+ GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
rJMSF012J14+ GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
rJMSF028M04+ GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
rJMFF026D15+ GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
                      ____________________________________________________________
consensus GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
 
. : . : . : . : . : . :
rJMSF048E23+ AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
rJMSF012J14+ AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
rJMSF028M04+ AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
rJMFF026D15+ AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
                      ____________________________________________________________
consensus AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
 
. : . : . : . : . : . :
rJMSF048E23+ GAAACTTACAGACAGTAGAAATCCAGTCAAA-CATAGGATTTTGTTCCAAACATTCTGCA
rJMSF012J14+ GAAACTTACAGACAGTAGAAATCCAGTCAAACCATAGGATTTTGTTCCAAACATTCTGCA
rJMSF028M04+ GAAACTTACAGACAGTAGAAATCCAGTCAAA-CATAGGATTTTGTTCCAAACATTCTGCA
rJMFF026D15+ GAAACTTACAGACAGTAGAAATCCAGTCAAA-CATAGGATTTTGTTCCAAACATTCTGCA
                      ____________________________________________________________
consensus GAAACTTACAGACAGTAGAAATCCAGTCAAA-CATAGGATTTTGTTCCAAACATTCTGCA
 
. : . : . : . : . : . :
rJMSF048E23+ ATTTCAAC
rJMSF012J14+ ATTTCAAC
rJMSF028M04+ ATTTCAAC
rJMFF026D15+ ATTTCAACCATTGTTATGTCATGATCTAATGTGTGCTGATTTGTCAGTGTGGCTAATTTG
                      ____________________________________________________________
consensus ATTTCAACCATTGTTATGTCATGATCTAATGTGTGCTGATTTGTCAGTGTGGCTAATTTG