Contig 008236:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026D15Sequence584008236 (5)ref|XP_010650910.1|5e-44PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein 753008236 (5)ref|XP_010650910.1|2e-55PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein
JMSF012J14Sequence534000660 (4)ref|XP_002525631.1|1e-43villin 1-4, putative [Ricinus communis] gb|EEF36749.1| villin 1-4, putative [Ric792008236 (5)ref|XP_010650910.1|3e-61PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein
JMSF028M04Sequence610000660 (4)ref|XP_002525631.1|6e-57villin 1-4, putative [Ricinus communis] gb|EEF36749.1| villin 1-4, putative [Ric701008236 (5)ref|XP_010650910.1|1e-55PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein
JMSF048E23Sequence681000660 (4)ref|XP_007016120.1|9e-66Villin-like 1 [Theobroma cacao] gb|EOY33739.1| Villin-like 1 [Theobroma cacao]740008236 (5)ref|XP_010650910.1|8e-60PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein

Alignment

This contig is upended


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JMFF026D15-                                                            CCGTGCTGGTA
                      ____________________________________________________________
consensus                                                              CCGTGCTGGTA
 
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JMFF026D15-           CTCAACTGCCATCGGGAAATTTATGTGTGGATAGGACGCAATTCGAGTATTAACTCGAAG
rJMSF012J14+                                                                   AAG
                      ____________________________________________________________
consensus             CTCAACTGCCATCGGGAAATTTATGTGTGGATAGGACGCAATTCGAGTATTAACTCGAAG
 
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JMFF026D15-           CGGGAAGCTATTGATTTTGTCCCGAAAGTTCTTGGTAAGGAGACTCCCATTGGAAAGCTT
rJMSF048E23+                                                             GGAAAGCTT
rJMSF012J14+          CGGGAAGCTATTGATTTTGTCCCGAAAGTTCTTGGTAAGGAGACTCCCATTGGAAAGCTT
                      ____________________________________________________________
consensus             CGGGAAGCTATTGATTTTGTCCCGAAAGTTCTTGGTAAGGAGACTCCCATTGGAAAGCTT
 
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JMFF026D15-           TCTCCCGATATTCCCATCTATATTATAAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
rJMSF048E23+          TCTCCCGATATTCCCATCTATATTATAAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
rJMSF012J14+          TCTCCCGATATTCCCATCTATATTATAAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
rJMSF028M04+                                     AATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
rJMFF026D15+                                    AAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
                      ____________________________________________________________
consensus             TCTCCCGATATTCCCATCTATATTATAAATGAAGGGTGTGAGCCCCCGTTCTTTACTCAA
 
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JMFF026D15-           TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
rJMSF048E23+          TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
rJMSF012J14+          TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
rJMSF028M04+          TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
rJMFF026D15+          TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
                      ____________________________________________________________
consensus             TGTTTCGAATGGGATTCTTCCAAGGCAAATATGCTTGGCAACTCGTTTGAGCGGAAGCTT
 
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JMFF026D15-           GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
rJMSF048E23+          GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
rJMSF012J14+          GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
rJMSF028M04+          GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
rJMFF026D15+          GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
                      ____________________________________________________________
consensus             GCTATTTTGAAGGGAAAACATCAAAAGCTGGAAGCGCCCGTAAAAGGCTCATGGAAAGCG
 
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JMFF026D15-           TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
rJMSF048E23+          TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
rJMSF012J14+          TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
rJMSF028M04+          TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
rJMFF026D15+          TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
                      ____________________________________________________________
consensus             TTTTCAATGGAAACTACCCCAACTAATTCGAGAAGTGGTTCTGTTGGTGCCAATGGGCAC
 
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JMFF026D15-           AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
rJMSF048E23+          AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
rJMSF012J14+          AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
rJMSF028M04+          AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
rJMFF026D15+          AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
                      ____________________________________________________________
consensus             AGAAGAAGAAGTTTATCGCCTAGCATTTCTGGCTCGACTGCAAAATCTTCAGAGAGTATC
 
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JMFF026D15-           CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
rJMSF048E23+          CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
rJMSF012J14+          CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
rJMSF028M04+          CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
rJMFF026D15+          CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
                      ____________________________________________________________
consensus             CGCCGTATTCCTAGCGCAGCTTCTGTTACCCGGATGCTATTTCCAGGATCATCAGAACAT
 
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JMFF026D15-           CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
rJMSF048E23+          CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
rJMSF012J14+          CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
rJMSF028M04+          CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
rJMFF026D15+          CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
                      ____________________________________________________________
consensus             CGTAATGGCAATGGATTATCTGTGCCTACCGGTAAGGCCACCACTATTGGCATCCCGAAA
 
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JMFF026D15-           AGCAGTCAGATCGAGGCTGATGCAAATTTGCCA                           
rJMSF048E23+          AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
rJMSF012J14+          AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
rJMSF028M04+          AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
rJMFF026D15+          AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
                      ____________________________________________________________
consensus             AGCAGTCAGATCGAGGCTGATGCAAATTTGCCAAAATATCCATATGAACAACTGACAATA
 
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rJMSF048E23+          GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
rJMSF012J14+          GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
rJMSF028M04+          GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
rJMFF026D15+          GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
                      ____________________________________________________________
consensus             GTGTCAACGAACCCGGCTACAGACATAGACATAACCAGACGAGAGGCGCATTTATCGGAT
 
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rJMSF048E23+          GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
rJMSF012J14+          GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
rJMSF028M04+          GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
rJMFF026D15+          GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
                      ____________________________________________________________
consensus             GAGGAGTTCCAAGAGAAATTTGGAATGGGAAGGAGCAGCTTCTATGGGCTTCCCAGGTGG
 
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rJMSF048E23+          AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
rJMSF012J14+          AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
rJMSF028M04+          AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
rJMFF026D15+          AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
                      ____________________________________________________________
consensus             AAACAGAACAAGCTAAAGATGACTCTTCATCTCTTCTGATATCTGTGTTGTGTTGATAAA
 
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rJMSF048E23+          GAAACTTACAGACAGTAGAAATCCAGTCAAA-CATAGGATTTTGTTCCAAACATTCTGCA
rJMSF012J14+          GAAACTTACAGACAGTAGAAATCCAGTCAAACCATAGGATTTTGTTCCAAACATTCTGCA
rJMSF028M04+          GAAACTTACAGACAGTAGAAATCCAGTCAAA-CATAGGATTTTGTTCCAAACATTCTGCA
rJMFF026D15+          GAAACTTACAGACAGTAGAAATCCAGTCAAA-CATAGGATTTTGTTCCAAACATTCTGCA
                      ____________________________________________________________
consensus             GAAACTTACAGACAGTAGAAATCCAGTCAAA-CATAGGATTTTGTTCCAAACATTCTGCA
 
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rJMSF048E23+          ATTTCAAC                                                    
rJMSF012J14+          ATTTCAAC                                                    
rJMSF028M04+          ATTTCAAC                                                    
rJMFF026D15+          ATTTCAACCATTGTTATGTCATGATCTAATGTGTGCTGATTTGTCAGTGTGGCTAATTTG
                      ____________________________________________________________
consensus             ATTTCAACCATTGTTATGTCATGATCTAATGTGTGCTGATTTGTCAGTGTGGCTAATTTG