Contig 008232:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001M20Sequence569005875 (2)ref|XP_009795808.1|5e-29PREDICTED: uncharacterized protein LOC104242454 isoform X2 [Nicotiana sylvestri637008232 (4)ref|XP_009587544.1|98.6PREDICTED: uncharacterized protein LOC104085254 [Nicotiana tomentosiformis]
JMFF025F14Sequence495005875 (2)ref|XP_009795808.1|3e-25PREDICTED: uncharacterized protein LOC104242454 isoform X2 [Nicotiana sylvestri701008232 (4)ref|XP_009587544.1|95.5PREDICTED: uncharacterized protein LOC104085254 [Nicotiana tomentosiformis]
JMSF015O10Sequence339008232 (4)418008232 (4)

Alignment

This contig is upended


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rJMFF025F14+                             CAGCCGACGCCGGCGGATCGAGCCGGGGTTTGAATATCGAC
                      ____________________________________________________________
consensus                                CAGCCGACGCCGGCGGATCGAGCCGGGGTTTGAATATCGAC
 
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rJMFF001M20+                            TCACCATCCAGGACTACTGACAACAAATCT-CCCCGACTTCG
rJMFF025F14+          GTCACGAATCCCAATGTTTCACCATCCAGGACTACTGACAACAAATCTCCCCCGACTTCG
                      ____________________________________________________________
consensus             GTCACGAATCCCAATGTTTCACCATCCAGGACTACTGACAACAAATCTCCCCCGACTTCG
 
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rJMFF001M20+          CAGTGGAACCGTCGTCGGTGCCGCCACCGCCGGAGCTTCCTCCTCCGGCGAGAAGCGCGA
rJMFF025F14+          CAGTGGAACCGTCGTCGGTGCCGCCACCGCCGGAGCTTCCTCCTCCGGCGAGAAGCGCGA
                      ____________________________________________________________
consensus             CAGTGGAACCGTCGTCGGTGCCGCCACCGCCGGAGCTTCCTCCTCCGGCGAGAAGCGCGA
 
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rJMFF001M20+          CAGAGCAAAGTTCTCCGTTCCGCTCGCCAAGCGAGAGATCGAAGAGGATTTCATGGCGAT
rJMFF025F14+          CAGAGCAAAGTTCTCCGTTCCGCTCGCCAAGCGAGAGATCGAAGAGGATTTCATGGCGAT
                      ____________________________________________________________
consensus             CAGAGCAAAGTTCTCCGTTCCGCTCGCCAAGCGAGAGATCGAAGAGGATTTCATGGCGAT
 
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rJMFF001M20+          TCTCGGTCAAAGACCCCCTCGCCGGCCCAAAAAACGACCTAAATTGGTCCAGAGGAGTTT
rJMFF025F14+          TCTCGGTCAAAGACCCCCTCGCCGGCCCAAAAAACGACCTAAATTGGTCCAGAGGAGTTT
                      ____________________________________________________________
consensus             TCTCGGTCAAAGACCCCCTCGCCGGCCCAAAAAACGACCTAAATTGGTCCAGAGGAGTTT
 
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rJMFF001M20+          AGATACTCTCTTCCCCGGATTATGGCTGTCGGAGATTACGCCTGACCTATACAAAGTCCC
rJMFF025F14+          AGATACTCTCTTCCCCGGATTATGGCTGTCGGAGATTACGCCTGACCTATACAAAGTCCC
                      ____________________________________________________________
consensus             AGATACTCTCTTCCCCGGATTATGGCTGTCGGAGATTACGCCTGACCTATACAAAGTCCC
 
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rJMFF001M20+          CGACGATCACTCCAAATGAACTATCCCATGGGTGATGTACAAACAAAAACATATATTAAT
rJMSF015O10+                                ATCCCATGGGTGATGTACAAACAAAAACATATATTAAT
JMSF015O10-                                 ATCCCATGGGTGATGTACAAACAAAAACATATATTAAT
rJMFF025F14+          CGACGATCACTCCAAATGAACTATCCCATGGGTGATGTACAAACAAAAACATATATTAAT
                      ____________________________________________________________
consensus             CGACGATCACTCCAAATGAACTATCCCATGGGTGATGTACAAACAAAAACATATATTAAT
 
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rJMFF001M20+          AACAGACAAGTAAATTCGTGACCATTTCATTTTGCTTCTGCGGGATTGGATTCCATGAAG
rJMSF015O10+          AACAGACAAGTAAATTCGTGACCATTTCATTTTGCTTCTGCGGGATTGGATTCCATGAAG
JMSF015O10-           AACAGACAAGTAAATTCGTGACCATTTCATTTTGCTTCTGCGGGATTGGATTCCATGAAG
rJMFF025F14+          AACAGACAAGTAAATTCGTGACCATTTCATTTTGCTTCTGCGGGATTGGATTCCATGAAG
                      ____________________________________________________________
consensus             AACAGACAAGTAAATTCGTGACCATTTCATTTTGCTTCTGCGGGATTGGATTCCATGAAG
 
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rJMFF001M20+          GAAGGCGTCGTTGTCTGGTAAAAAGAAAAAAACAGAAAGCTTAGTTGCTTTGAAAACGCT
rJMSF015O10+          GAAGGCGTCGTTGTCTGGTAAAAAGAAAAAAACAGAAAGCTTAGTTGCTTTGAAAACGCT
JMSF015O10-           GAAGGCGTCGTTGTCTGGTAAAAAGAAAAAAACAGAAAGCTTAGTTGCTTTGAAAACGCT
rJMFF025F14+          GAAGGCGTCGTTGTCTGGTAAAAAGAAAAAAACAGAAAGCTTAGTTGCTTTGAAAACGCT
                      ____________________________________________________________
consensus             GAAGGCGTCGTTGTCTGGTAAAAAGAAAAAAACAGAAAGCTTAGTTGCTTTGAAAACGCT
 
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rJMFF001M20+          AGATTTTGTTTAGCCATCGTCTTCGTCTTCGTCGTCTTATTTGTTCATAGTTTTGGGTTG
rJMSF015O10+          AGATTTTGTTTAGCCATCGTCTTCGTCTTCGTCGTCTTATTTGTTCATAGTTTTGGGTTG
JMSF015O10-           AGATTTTGTTTAGCCATCGTCTTCGTCTTCGTCGTCTTATTTGTTCATAGTTTTGGGTTG
rJMFF025F14+          AGATTTTGTTTAGCCATCGTCTTCGTCTTCGTCGTCTTATTTGTTCATAGTTTTGGGTTG
                      ____________________________________________________________
consensus             AGATTTTGTTTAGCCATCGTCTTCGTCTTCGTCGTCTTATTTGTTCATAGTTTTGGGTTG
 
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rJMFF001M20+          TCTAGCTTTGTTCACCGGAATAAACTAACATGGTGCAGAGTCTGGGTGAATTGGTTGTTC
rJMSF015O10+          TCTAGCTTTGTTCACCGGAATAAACTAACATGGTGCAGAGTCTGGGTGAATTGGTTGTTC
JMSF015O10-           TCTAGCTTTGTTCACCGGAATAAACTAACATGGTGCA                       
rJMFF025F14+          TCTAGCTTTGTTCACCGGAATAAACTAACATGGTGCAGAGTCTGGGTGAATTGGTTGTTC
                      ____________________________________________________________
consensus             TCTAGCTTTGTTCACCGGAATAAACTAACATGGTGCAGAGTCTGGGTGAATTGGTTGTTC
 
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rJMFF001M20+          TTTAGCTGCAACAAAAGATCCGCAATTGTTCATAATTTCCATCAAAGACTGCAAAT    
rJMSF015O10+          TTTAGCTGCAACAAAAGATCCGCAATTGTTCATAATTTCCATCAAAGACTGCAAAT    
rJMFF025F14+          TTTAGCTGCAACAAAAGATCCGCAATTGTTCATAATTTCCATCAAAGACTGCAAATACTT
                      ____________________________________________________________
consensus             TTTAGCTGCAACAAAAGATCCGCAATTGTTCATAATTTCCATCAAAGACTGCAAATACTT