| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008N02 | Sequence | 584 | 007439 (5) | ref|XP_006363689.1| | 1e-29 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Solanum tuberosum] | 721 | 008231 (7) | ref|XP_006363689.1| | 4e-94 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Solanum tuberosum] |
| JMFF025E23 | Sequence | 584 | 007439 (5) | ref|XP_006363689.1| | 3e-30 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Solanum tuberosum] | 804 | 008231 (7) | ref|XP_006363689.1| | 5e-107 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Solanum tuberosum] |
| JMFF038D03 | Sequence | 543 | 007439 (5) | ref|XP_004249606.1| | 3e-25 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Solanum lycopersicum] | 744 | 008231 (7) | gb|KHG20895.1| | 4e-86 | UDP-glucuronic acid decarboxylase 1 [Gossypium arboreum] |
| JMFN044E20 | Sequence | 528 | 008231 (7) | ref|XP_006348327.1| | 1e-52 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Solanum tuberosum] | |||||
| JMFS073D01 | Sequence | 623 | 008231 (7) | ref|XP_002534053.1| | 2e-141 | dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] gb|EEF28331.1| dtdp-gl | |||||
| JMSF040F14 | Sequence | 605 | 007439 (5) | ref|XP_006363689.1| | 2e-40 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Solanum tuberosum] | 871 | 008231 (7) | ref|XP_002534053.1| | 2e-122 | dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] gb|EEF28331.1| dtdp-gl |
| JMSF042C18 | Sequence | 807 | 007439 (5) | emb|CBI32663.3| | 3e-89 | unnamed protein product [Vitis vinifera] | 819 | 008231 (7) | ref|XP_006363689.1| | 2e-123 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFS073D01- GGGCACTCTTAACATGCTGGGACTTGCAAAGAGGATTGGTGCAAGGTTCTTGCT
____________________________________________________________
consensus GGGCACTCTTAACATGCTGGGACTTGCAAAGAGGATTGGTGCAAGGTTCTTGCT
. : . : . : . : . : . :
JMFS073D01- TACTAGTACGAGTGAGGTTTATGGAGATCCACTTGAGCATCCCCAGAAGGAAACTTATT-
rJMSF040F14+ TTTATGGAGATCCACNTGAGCATCCCCAGAAGGAAACTTATTG
____________________________________________________________
consensus TACTAGTACGAGTGAGGTTTATGGAGATCCACTTGAGCATCCCCAGAAGGAAACTTATTG
. : . : . : . : . : . :
JMFS073D01- GGGGAAATGTTAATCCAATAGGTGAGCGGAGTTGCTATGATGAGGGAAAACGTACTG-CC
rJMSF040F14+ GGGGAAATGTTAATCCAATAGGTGAGCGGAGTTGCTATGATGAGGGAAAACGTACTG-CC
rJMFF038D03+ TGATGAGGGAAAACGTACTG-CC
rJMSF042C18+ GGGGAAATGTTAATCCAATAGGTGAGCGGAGTTGCTATGATGAGGGAAAACGTACTG-CC
rJMFF025E23+ CTATGATGAGGGAAAACGTACTGCCC
____________________________________________________________
consensus GGGGAAATGTTAATCCAATAGGTGAGCGGAGTTGCTATGATGAGGGAAAACGTACTG-CC
. : . : . : . : . : . :
JMFS073D01- GAGACTTTGACTATGGATTATCACCGAGGTGCAGAAGTGGAGGTGCGCATTG-CCCGTAT
rJMSF040F14+ GAGACTTTGACTATGGATTATCACCGAGGTGCAGAAGTGGAGGTGCGCATTG-CCCGTAT
rJMFF038D03+ GAGACTTTGACTATGGATTATCACCGAGGTGCAGAAGTGGAGGTGCGCATTG-CCCGTAT
rJMSF042C18+ GAGACTTTGACTATGGATTATCACCGAGGTGCAGAAGTGGAGGTGCGCATTG-CCCGTAT
rJMFF008N02+ ACTATGGATTATCACCGAGGTGCAGAAGTGGAGGTGCGCATTGCCCCGTAT
rJMFF025E23+ GAGACTTTGACTATGGATTATCACCGAGGTGCAGAAGTGGAGGTGCGCATTG-CCCGTAT
____________________________________________________________
consensus GAGACTTTGACTATGGATTATCACCGAGGTGCAGAAGTGGAGGTGCGCATTG-CCCGTAT
. : . : . : . : . : . :
JMFS073D01- TTTCAATACATATGGACCTCGAATGT-CACTAGATGATGGACGTGTTGTCAGTAACTTTG
rJMSF040F14+ TTTCAATACATATGGACCTCGAATGT-CACTAGATGATGGACGTGTTGTCAGTAACTTTG
rJMFF038D03+ TTTCAATACATATGGACCTCGAATGTCCACTAGATGATGGACGTGTTGTCAGTAACTTTG
rJMSF042C18+ TTTCAATACATATGGACCTCGAATGT-CACTAGATGATGGACGTGTTGTCAGTAACTTTG
rJMFF008N02+ TTTCAATACATATGGACCTCGAATGT-CACTAGATGATGGACGTGTTGTCAGTAACTTTG
rJMFF025E23+ TTTCAATACATATGGACCTCGAATGT-CACTAGATGATGGACGTGTTGTCAGTAACTTTG
____________________________________________________________
consensus TTTCAATACATATGGACCTCGAATGT-CACTAGATGATGGACGTGTTGTCAGTAACTTTG
. : . : . : . : . : . :
JMFS073D01- TAGCTCAGGCTATTCGCAAGCAACCTATGACAGTGTATGGCGATGGACAGCAAACAAGAA
rJMSF040F14+ TAGCTCAGGCTATTCGCAAGCAACCTATGACAGTGTATGGCGATGGACAGCAAACAAGAA
rJMFF038D03+ TAGCTCAGGCTATTCGCAAGCAACCTATGACAGTGTATGGCGATGGACAGCAAACAAGAA
rJMSF042C18+ TAGCTCAGGCTATTCGCAAGCAACCTATGACAGTGTATGGCGATGGACAGCAAACAAGAA
rJMFF008N02+ TAGCTCAGGCTATTCGCAAGCAACCTATGACAGTGTATGGCGATGGACAGCAAACAAGAA
rJMFF025E23+ TAGCTCAGGCTATTCGCAAGCAACCTATGACAGTGTATGGCGATGGACAGCAAACAAGAA
____________________________________________________________
consensus TAGCTCAGGCTATTCGCAAGCAACCTATGACAGTGTATGGCGATGGACAGCAAACAAGAA
. : . : . : . : . : . :
JMFS073D01- GCTTCCAATATGTTTCTGACTTGGTTGATGGACTGGTAGCGTTGATGGAAGGTGAGCATG
rJMSF040F14+ GCTTCCAATATGTTTCTGACTTGGTTGATGGACTGGTAGCGTTGATGGAAGGTGAGCATG
rJMFF038D03+ GCTTCCAATATGTTTCTGACTTGGTTGATGGACTGGTAGCGTTGATGGAAGGTGAGCATG
rJMSF042C18+ GCTTCCAATATGTTTCTGACTTGGTTGATGGACTGGTAGCGTTGATGGAAGGTGAGCATG
rJMFF008N02+ GCTTCCAATATGTTTCTGACTTGGTTGATGGACTGGTAGCGTTGATGGAAGGTGAGCATG
JMFN044E20- CGTTGATGGAAGGTGAGCATG
rJMFF025E23+ GCTTCCAATATGTTTCTGACTTGGTTGATGGACTGGTAGCGTTGATGGAAGGTGAGCATG
____________________________________________________________
consensus GCTTCCAATATGTTTCTGACTTGGTTGATGGACTGGTAGCGTTGATGGAAGGTGAGCATG
. : . : . : . : . : . :
JMFS073D01- TTGGGCCTTTCAACCTGGGAAATCCAGGGGAGTTCACCATGTTGGAGCTTGCTGAGGTTG
rJMSF040F14+ TTGGGCCTTTCAACCTGGGAAATCCAGGGGAGTTCACCATGTTGGAGCTTGCTGAGGTTG
rJMFF038D03+ TTGGGCCTTTCAACCTGGGAAATCCAGGGGAGTTCACCATGTTGGAGCTTGCTGAGGTTG
rJMSF042C18+ TTGGGCCTTTCAACCTGGGAAATCCAGGGGAGTTCACCATGTTGGAGCTTGCTGAGGTTG
rJMFF008N02+ TTGGGCCTTTCAACCTGGGAAATCCAGGGGAGTTCACCATGTTGGAGCTTGCTGAGGTTG
JMFN044E20- TTGGGCCTTTCAACCTGGGAAATCCAGGGGAGTTCACCATGTTGGAGCTTGCTGAGGTTG
rJMFF025E23+ TTGGGCCTTTCAACCTGGGAAATCCAGGGGAGTTCACCATGTTGGAGCTTGCTGAGGTTG
____________________________________________________________
consensus TTGGGCCTTTCAACCTGGGAAATCCAGGGGAGTTCACCATGTTGGAGCTTGCTGAGGTTG
. : . : . : . : . : . :
JMFS073D01- TGAAAAAAGTGATTGATCCTAGTGCAACAATCGAATTTAAACCCAACACTGCTGACGACC
rJMSF040F14+ TGAAAAAAGTGATTGATCCTAGTGCAACAATCGAATTTAAACCCAACACTGCTGACGACC
rJMFF038D03+ TGAAAAAAGTGATTGATCCTAGTGCAACAATCGAATTTAAACCCAACACTGCTGACGACC
rJMSF042C18+ TGAAAAAAGTGATTGATCCTAGTGCAACAATCGAATTTAAACCCAACACTGCTGACGACC
rJMFF008N02+ TGAAAAAAGTGATTGATCCTAGTGCAACAATCGAATTTAAAACCAACACTGCTGACGACC
JMFN044E20- TGAAAAAAGTGATTGATCCTAGTGCAACAATCGAATTTAAACCCAACACTGCTGACGACC
rJMFF025E23+ TGAAAAAAGTGATTGATCCTAGTGCAACAATCGAATTTAAACCCAACACTGCTGACGACC
____________________________________________________________
consensus TGAAAAAAGTGATTGATCCTAGTGCAACAATCGAATTTAAACCCAACACTGCTGACGACC
. : . : . : . : . : . :
JMFS073D01- CTCACAAGAGGAAGCCAGACATCAGTAGAGCAAAGGAACTTCTAAATTGGGAGCCGAGAA
rJMSF040F14+ CTCACAAGAGGAAGCCAGACATCAGTAGAGCAAAGGAACTTCTAAATTGGGAGCCGAGAA
rJMFF038D03+ CTCACAAGAGGAAGCCAGACATCAGTAGAGCAAAGGAACTTCTAAATTGGGAGCCGAGAA
rJMSF042C18+ CTCACAAGAGGAAGCCAGACATCAGTAGAGCAAAGGAACTTCTAAATTGGGAGCCGAGAA
rJMFF008N02+ CTCACAAGAGGAAGCCAGACATCAGTAGAGCAAAGGAACTTCTAAATTGGGAGCCGAGAA
JMFN044E20- CTCACAAGAGGAAGCCAGACATCAGTAGAGCAAAGGAACTTCTAAATTGGGAGCCGAGAA
rJMFF025E23+ CTCACAAGAGGAAGCCAGACATCAGTAGAGCAAAGGAACTTCTAAATTGGGAGCCGAGAA
____________________________________________________________
consensus CTCACAAGAGGAAGCCAGACATCAGTAGAGCAAAGGAACTTCTAAATTGGGAGCCGAGAA
. : . : . : . : . : . :
JMFS073D01- TCCCCCTGCAGGATGGGCTGCCCCTCATGGTCA
rJMSF040F14+ TCCCCCTGCAGGATGGGCTGCCCCTCATGGTCAATGATTTCCGCAATCGCATCTTGAATG
rJMFF038D03+ TCCCCCTGCAGGATGGGCTGCCCCTCATGGTCAATGATTTCCGCAATCGCATCTTGAATG
rJMSF042C18+ TCCCCCTGCAGGATGGGCTGCCCCTCATGGTCAATGATTTCCGCAATCGCATCTTGAATG
rJMFF008N02+ TCCCCCTGCAGGATGGGCTGCCCCTCATGGTCAATGATTTCCGCAATCGCATCTTGAATG
JMFN044E20- TCCCCCTGCAGGATGGGCTGCCCCTCATGGTCAATGATTTCCGCAATCGCATCTTGAATG
rJMFF025E23+ TCCCCCTGCAGGATGGGCTGCCCCTCATGGTCAATGATTTCCGCAATCGCATCTTGAATG
____________________________________________________________
consensus TCCCCCTGCAGGATGGGCTGCCCCTCATGGTCAATGATTTCCGCAATCGCATCTTGAATG
. : . : . : . : . : . :
rJMSF040F14+ AAGATGAAGGAAAAGGGAACAAGTAAACAAACAGTATGTATAGATCATACTCTAGTGTCT
rJMFF038D03+ AAGATGAAGGAAAAGGGAACAAGTAAACAAACAGTATGTATAGATCATACTCTAGTGTCT
rJMSF042C18+ AAGATGAAGGAAAAGGGAACAAGTAAACAAACAGTATGTATAGATCATACTCTAGTGTCT
rJMFF008N02+ AAGATGAAGGAAAAGGGAACAAGTAAACAAACAGTATGTATAGATCATACTCTAGTGTCT
JMFN044E20- AAGATGAAGGAAAAGGGAACAAGTAAACAAACAGTATGTATAGATCATACTCTAGTGTCT
rJMFF025E23+ AAGATGAAGGAAAAGGGAACAAGTAAACAAACAGTATGTATAGATCATACTCTAGTGTCT
____________________________________________________________
consensus AAGATGAAGGAAAAGGGAACAAGTAAACAAACAGTATGTATAGATCATACTCTAGTGTCT
. : . : . : . : . : . :
rJMSF040F14+ TATGTTGTTTATTTCTTTGTCTAGTTCATATATTCATTCTTTCTTCTTCACACGTGGGGC
rJMFF038D03+ TATGTTGTTTATTTCTTTGTCTAGTTCATATATTCATTCTTTCTTCTTCACACGTGGGGC
rJMSF042C18+ TATGTTGTTTATTTCTTTGTCTAGTTCATATATTCATTCTTTCTTCTTCACACGTGGGGC
rJMFF008N02+ TATGTTGTTTATTTCTTTGTCTAGTTCATATATTCATTCTTTCTTCTTCACACGTGGGGC
JMFN044E20- TATGTTGTTTATTTCTTTGTCTAGTTCATATATTCATTCTTTCTTCTTCACACGTGGGGC
rJMFF025E23+ TATGTTGTTTATTTCTTTGTCTAGTTCATATATTCATTCTTTCTTCTTCACACGTGGGGC
____________________________________________________________
consensus TATGTTGTTTATTTCTTTGTCTAGTTCATATATTCATTCTTTCTTCTTCACACGTGGGGC
. : . : . : . : . : . :
rJMSF040F14+ CACCCCAACAGCTATAGTATCTAGCACTGTTCTACAGCAATAGGAATAAATTGTCTTATT
rJMFF038D03+ CACCCCAACAGCTATAGTATCTAGCACTGTTCTACAGCAATAGGAATAAATTGTCTTATT
rJMSF042C18+ CACCCCAACAGCTATAGTATCTAGCACTGTTCTACAGCAATAGGAATAAATTGTCTTATT
rJMFF008N02+ CACCCCAACAGCTATAGTATCTAGCACTGTTCTACAGCAATAGGAATAAATTGTCTTATT
JMFN044E20- CACCCCAACAGCTATAGTATCTAGCACTGTTCTACAGCAATAGGAATAAATTGTCTTATT
rJMFF025E23+ CACCCCAACAGCTATAGTATCTAGCACTGTTCTACAGCAATAGGAATAAATTGTCTTATT
____________________________________________________________
consensus CACCCCAACAGCTATAGTATCTAGCACTGTTCTACAGCAATAGGAATAAATTGTCTTATT
. : . : . : . : . : . :
rJMSF040F14+ TTGATTTTGATTTTTTCTTCTTTTTTTGGGGTTAAATTCAAATTTTGTATCTTTACCCTT
rJMFF038D03+ TTGATTTTGATTTTTTCTTCTTTTTTTGGGGTTAAATTCAAATTTTGTATCTTTACCCTT
rJMSF042C18+ TTGATTTTGATTTTTTCTTCTTTTTTTGGGGTTAAATTCAAATTTTGTATCTTTACCCTT
rJMFF008N02+ TTGATTTTGATTTTTTCTTCTTTTTTTGGGGTTAAATTCAAATTTTGTATCTTTACCCTT
JMFN044E20- TTGATTTTGATTTTTTCTTCTTTTTTTGGGGTTAAATTCAAATTTTGTATCTTTACCCTT
rJMFF025E23+ TTGATTTTGATTTTTTCTTCTTTTTTTGGGGTTAAATTCAAATTTTGTATCTTTACCCTT
____________________________________________________________
consensus TTGATTTTGATTTTTTCTTCTTTTTTTGGGGTTAAATTCAAATTTTGTATCTTTACCCTT
. : . : . : . : . : . :
rJMSF040F14+ AATTCAAAATTGGGCATTGCC
rJMFF038D03+ AAT
rJMSF042C18+ AATTCAAAATTGGGCATTGCC
rJMFF008N02+ AATTCAAAATT
JMFN044E20- AATTCAAAATTGGGCATTGCC
rJMFF025E23+ AATTCAAAATTGGGCATTGCCTTGCTGTGTAAAACTCCTTTGTGATATTAGTAAGAAGCT
____________________________________________________________
consensus AATTCAAAATTGGGCATTGCCTTGCTGTGTAAAACTCCTTTGTGATATTAGTAAGAAGCT