Contig 008225:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022J01Sequence359006329 (3)ref|XP_004242662.1|2e-34PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Solanum lycopersicu664008225 (2)ref|XP_006360251.1|3e-83PREDICTED: probable cyclic nucleotide-gated ion channel 17-like, partial [Solan
JMFF022O03Sequence543006329 (3)ref|XP_004242662.1|1e-72PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Solanum lycopersicu689008225 (2)ref|XP_006360251.1|6e-47PREDICTED: probable cyclic nucleotide-gated ion channel 17-like, partial [Solan

Alignment

This contig is upended


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rJMFF022J01+             GGGGAGGAGCTCCTTGCTTGGGCTTTGCACCCAAGATCTACTGTCAACTTGCCTTCC
                      ____________________________________________________________
consensus                GGGGAGGAGCTCCTTGCTTGGGCTTTGCACCCAAGATCTACTGTCAACTTGCCTTCC
 
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rJMFF022J01+          TCAACCAGGACAGTGAGAGCACTGGTTGAAGTGGAAGCCTTTGCATTGAGAGCTGAAGAT
                      ____________________________________________________________
consensus             TCAACCAGGACAGTGAGAGCACTGGTTGAAGTGGAAGCCTTTGCATTGAGAGCTGAAGAT
 
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rJMFF022J01+          CTCAAGTTCGTTGCTAACCAGTTTAGGCGACTCCACAGCAAGAAGCTGCAGCATACATTC
rJMFF022O03+                                         TCCACAGCAAGAAGCTGCAGCATACATTC
                      ____________________________________________________________
consensus             CTCAAGTTCGTTGCTAACCAGTTTAGGCGACTCCACAGCAAGAAGCTGCAGCATACATTC
 
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rJMFF022J01+          CGGTTCTACTCTCACCATTGGAGAACATGGGCAGCGTGCTTCATACAGGCCGCTTGGCGA
rJMFF022O03+          CGGTTCTACTCTCACCATTGGAGAACATGGGCAGCGTGCTTCATACAGGCCGCTTGGCGA
                      ____________________________________________________________
consensus             CGGTTCTACTCTCACCATTGGAGAACATGGGCAGCGTGCTTCATACAGGCCGCTTGGCGA
 
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rJMFF022J01+          CGACACAAGCGAAGAATGATGGCAAAAGATCTTGCTAGGATGGAATCCTTTGCTTTAAAT
rJMFF022O03+          CGACACAAGCGAAGAATGATGGCAAAAGATCTTGCTAGGATGGAATCCTTTGCTTTAAAT
                      ____________________________________________________________
consensus             CGACACAAGCGAAGAATGATGGCAAAAGATCTTGCTAGGATGGAATCCTTTGCTTTAAAT
 
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rJMFF022J01+          GAAAGAACGGAAGAGAGTGAGCGAGGAGGCGAGGAACAGGAGGAGGAGGATACTAGTACT
rJMFF022O03+          GAAAGAACGGAAGAGAGTGAGCGAGGAGGCGAGGAACAGGAGGAGGAGGATACTAGTACT
                      ____________________________________________________________
consensus             GAAAGAACGGAAGAGAGTGAGCGAGGAGGCGAGGAACAGGAGGAGGAGGATACTAGTACT
 
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rJMFF022J01+          TCTCCCACCTCAAACCAGTCCCTGACAAAGTTAAATCTCGGTGTCACGATATTGGCTTCA
rJMFF022O03+          TCTCCCACCTCAAACCAGTCCCTGACAAAGTTAAATCTCGGTGTCACGATATTGGCTTCA
                      ____________________________________________________________
consensus             TCTCCCACCTCAAACCAGTCCCTGACAAAGTTAAATCTCGGTGTCACGATATTGGCTTCA
 
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rJMFF022J01+          AGATTTGCTGCAAACACTAGGAGAGGAGCTCAGAAGATCAAAGATGTCGGTTTGCCTAAA
rJMFF022O03+          AGATTTGCTGCAAACACTAGGAGAGGAGCTCAGAAGATCAAAGATGTCGGTTTGCCTAAA
                      ____________________________________________________________
consensus             AGATTTGCTGCAAACACTAGGAGAGGAGCTCAGAAGATCAAAGATGTCGGTTTGCCTAAA
 
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rJMFF022J01+          CTACAAAAACCCGAAGAGCCTGACTTTTCAGCAGAGGCGGATGACGACTAGCAACTGTTG
rJMFF022O03+          CTACAAAAACCCGAAGAGCCTGACTTTTCAACAGAGGCGGATGACGACTAGCAACTGTTG
                      ____________________________________________________________
consensus             CTACAAAAACCCGAAGAGCCTGACTTTTCAGCAGAGGCGGATGACGACTAGCAACTGTTG
 
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rJMFF022J01+          GTTTCAGTAGCAAAGGCTAACTTTTTATGTGATGCATTCTGGTAATATGAATGATAATTT
rJMFF022O03+          GTTTCAGTAGCAAAGGCTAACTTTTTATGTGATGCATTCTGGTAATATGAATGATAATTT
                      ____________________________________________________________
consensus             GTTTCAGTAGCAAAGGCTAACTTTTTATGTGATGCATTCTGGTAATATGAATGATAATTT
 
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rJMFF022J01+          CATAGTTTTGAGCAAACATGTATCAACAAGAAGTTGTGTAAATGAGAAACAAGAAAGTGG
rJMFF022O03+          CATAGTTTTGAGCAAACATGTATCAACAAGAAGTTGTGTAAATGAGAAACAAGAAAGTGG
                      ____________________________________________________________
consensus             CATAGTTTTGAGCAAACATGTATCAACAAGAAGTTGTGTAAATGAGAAACAAGAAAGTGG
 
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rJMFF022J01+          GGGAATG                                                     
rJMFF022O03+          GGGAATGGAGATTTTTCTGCAAACTGAAACATCATGATGATGATGATAATTCCTTCTATA
                      ____________________________________________________________
consensus             GGGAATGGAGATTTTTCTGCAAACTGAAACATCATGATGATGATGATAATTCCTTCTATA
 
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rJMFF022O03+          ATGTTAATGTTGAAGAGACGACNCCTGTATCCTGTAACAGCTCTGTTAAATTATCTACAA
                      ____________________________________________________________
consensus             ATGTTAATGTTGAAGAGACGACNCCTGTATCCTGTAACAGCTCTGTTAAATTATCTACAA
 
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rJMFF022O03+          AGTATTCAACAAAGTTGTTGAGAGCATGTAAGTTATGGGACTTGGATATTCTCACTTTCT
                      ____________________________________________________________
consensus             AGTATTCAACAAAGTTGTTGAGAGCATGTAAGTTATGGGACTTGGATATTCTCACTTTCT