| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022K18 | Sequence | 401 | 008224 (6) | ref|XP_006376179.1| | 4e-04 | hypothetical protein POPTR_0013s10560g [Populus trichocarpa] gb|ERP53976.1| hypo | 843 | 008224 (6) | ref|XP_006343476.1| | 1e-44 | PREDICTED: uncharacterized protein LOC102583038 isoform X1 [Solanum tuberosum] |
| JMFF040G03 | Sequence | 495 | 008224 (6) | ref|XP_002325938.2| | 3e-08 | hypothetical protein POPTR_0019s10000g, partial [Populus trichocarpa] gb|EEF0032 | 840 | 008224 (6) | ref|XP_006343476.1| | 2e-44 | PREDICTED: uncharacterized protein LOC102583038 isoform X1 [Solanum tuberosum] |
| JMSF038J09 | Sequence | 662 | 008224 (6) | ref|XP_002325938.2| | 1e-07 | hypothetical protein POPTR_0019s10000g, partial [Populus trichocarpa] gb|EEF0032 | 935 | 008224 (6) | ref|XP_006343476.1| | 4e-44 | PREDICTED: uncharacterized protein LOC102583038 isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFF040G03- GTTTTCACCGTTCCCTTGTATCTCTTTTT
JMFF022K18- GTTTTCACCGTTCCCTTGTATCTCTTTTT
JMSF038J09- GGACCCTGGGGCTTCTGCTGCCCCTGTTTTCACCGTTCCCTTGTATCTCTTTTT
____________________________________________________________
consensus GGACCCTGGGGCTTCTGCTGCCCCTGTTTTCACCGTTCCCTTGTATCTCTTTTT
. : . : . : . : . : . :
JMFF040G03- CTCTCACTGTAATTGATTCATTCCCAAGGAGCTTAGCGTTTCTTTGTTTTTCCCCTTCGA
JMFF022K18- CTCTCACTGTAATTGATTCATTCCCAAGGAGCTTAGCGTTTCTTTGTTTTTCCCCTTCGA
JMSF038J09- CTCTCACTGTAATTGATTCATTCCCAAGGAGCTTAGCGTTTCTTTGTTTTTCCCCTTCGA
____________________________________________________________
consensus CTCTCACTGTAATTGATTCATTCCCAAGGAGCTTAGCGTTTCTTTGTTTTTCCCCTTCGA
. : . : . : . : . : . :
JMFF040G03- TCAAGGAAGAGTGAAACCGCCATGGATATGGATGAATTTCATGATTGGGAGGTGCTGCAG
JMFF022K18- TCAAGGAAGAGTGAAACCGCCATGGATATGGATGAATTTCATGATTGGGAGGTGCTGCAG
JMSF038J09- TCAAGGAAGAGTGAAACCGCCATGGATATGGATGAATTTCATGATTGGGAGGTGCTGCAG
____________________________________________________________
consensus TCAAGGAAGAGTGAAACCGCCATGGATATGGATGAATTTCATGATTGGGAGGTGCTGCAG
. : . : . : . : . : . :
JMFF040G03- CCGAGCCCGGGTTCGGATTCTGGAAACCAGTTCAAATTTGGGGAATTCGGAGCTGATTCG
JMFF022K18- CCGAGCCCGGGTTCGGATTCTGGAAACCAGTTCAAATTTGGGGAATTCGGAGCTGATTCG
JMSF038J09- CCGAGCCCGGGTTCGGATTCTGGAAACCAGTTCAAATTTGGGGAATTCGGAGCTGATTCG
____________________________________________________________
consensus CCGAGCCCGGGTTCGGATTCTGGAAACCAGTTCAAATTTGGGGAATTCGGAGCTGATTCG
. : . : . : . : . : . :
JMFF040G03- GATGGTGTGATTCGTAACGATTACTTTTCAGTTGATGATGACGATCGGTATCTGAAAACC
JMFF022K18- GATGGTGTGATTCGTAACGATTACTTTTCAGTTGATGATGACGATCGGTATCTGAAAACC
JMSF038J09- GATGGTGTGATTCGTAACGATTACTTTTCAGTTGATGATGACGATCGGTATCTGAAAACC
____________________________________________________________
consensus GATGGTGTGATTCGTAACGATTACTTTTCAGTTGATGATGACGATCGGTATCTGAAAACC
. : . : . : . : . : . :
JMFF040G03- GTTGCTGCTGCTGATGCCGTCGGGGCGGCGGGGTCAGGGGCATCGGATAATCCGAATTGG
JMFF022K18- GTTGCTGCTGCTGATGCCGTCGGGGCGGCGGGGTCAGGGGCATCGGATAATCCGAATTGG
JMSF038J09- GTTGCTGCTGCTGATGCCGTCGGGGCGGCGGGGTCAGGGGCATCGGATAATCCGAATTGG
____________________________________________________________
consensus GTTGCTGCTGCTGATGCCGTCGGGGCGGCGGGGTCAGGGGCATCGGATAATCCGAATTGG
. : . : . : . : . : . :
JMFF040G03- ATTGGCCACGCGTTGTCCCGGGAGGGTTCTGACGAGTTCTGTCCCGAGTTGGAAGTTGAT
JMFF022K18- ATTGGCCACGCGTTGTCCCGGGAGGGTTCTGACGAGTTCTGTCCCGAGTTGGAAGTTGAT
JMSF038J09- ATTGGCCACGCGTTGTCCCGGGAGGGTTCTGACGAGTTCTGTCCCGAGTTGGAAGTTGAT
____________________________________________________________
consensus ATTGGCCACGCGTTGTCCCGGGAGGGTTCTGACGAGTTCTGTCCCGAGTTGGAAGTTGAT
. : . : . : . : . : . :
JMFF040G03- AGGTCAGAGATTCGGATGCTAGAGGAGTTTGAGGGGAAAGGAGAAATTGACTTTCTTCTC
JMFF022K18- AGGTCAGAGATT
JMSF038J09- AGGTCAGAGATTCGGATGCTAGAGGAGTTTGAGGGGAAAGGAGAAATTGACTTTCTTCTC
____________________________________________________________
consensus AGGTCAGAGATTCGGATGCTAGAGGAGTTTGAGGGGAAAGGAGAAATTGACTTTCTTCTC
. : . : . : . : . : . :
JMFF040G03- GATAAGGAGAAAGTTCAAGGGGGTTTTGGTGGAATTAATGAGACAG
JMSF038J09- GATAAGGAGAAAGTTCAAGGGGGTTTTGGTGGAATTAATGAGACAGGGAATAACTTCGAG
rJMSF038J09+ GGGAATAACTTCGAG
____________________________________________________________
consensus GATAAGGAGAAAGTTCAAGGGGGTTTTGGTGGAATTAATGAGACAGGGAATAACTTCGAG
. : . : . : . : . : . :
JMSF038J09- GAATTCAAGTCCGGTTGGGAAGGAAATGAATTCGGTGGAGCGAAATTCGAGGAGTTTGAG
rJMSF038J09+ GAATTCAAGTCCGGTTGGGAAGGAAATGAATTCGGTGGAGCGAAATTCGAGGAGTTTGAG
rJMFF040G03+ GAG
rJMFF022K18+ GAG
____________________________________________________________
consensus GAATTCAAGTCCGGTTGGGAAGGAAATGAATTCGGTGGAGCGAAATTCGAGGAGTTTGAG
. : . : . : . : . : . :
JMSF038J09- GATAACTTGCGCGAGGAATCAGAGGTTTTTGCTGACAAAGAACATGAAACCTTACCAACT
rJMSF038J09+ GATAACTTGCGCGAGGAATCAGAGGTTTTTGCTGACAAAGAACATGAAACCTTACCAACT
rJMFF040G03+ GATAACTTGCGCGAGGAATCAGAGG-TTTTGCTGACAAAGAACATGAAACCTTACCAACT
rJMFF022K18+ GATAACTTGCGCGAGGAATCAGAGGTTTTTGCTGACAAAGAACATGAACCCTTACCAACT
____________________________________________________________
consensus GATAACTTGCGCGAGGAATCAGAGGTTTTTGCTGACAAAGAACATGAAACCTTACCAACT
. : . : . : . : . : . :
JMSF038J09- GGTGGTGA
rJMSF038J09+ GGTGGTGAAACCGTGAACAAAACTGTTGAAGTTGAAGTGAAGAATAACTTCGAGGAGTTC
rJMFF040G03+ GGTGGTGAAACCGTGAACAAAACTGTTGAAGTTGAAGTGAAGAATAACTTCGAGGAGTTC
rJMFF022K18+ GGTGGTGAAACCGTGAACAAAACTGTTGAAGTTGAAGTGAAGAATAACTTCGAGGAGTTC
____________________________________________________________
consensus GGTGGTGAAACCGTGAACAAAACTGTTGAAGTTGAAGTGAAGAATAACTTCGAGGAGTTC
. : . : . : . : . : . :
rJMSF038J09+ AATTCCGGTTGGGGAGGAAATGGATATGGATATGGTGGAGCGAAATTCGATGAGTTTGAG
rJMFF040G03+ AATTCCGGTTGGGGAGGAAATGGATATGGATATGGTGGAGCGAAATTCGATGAGTTTGAG
rJMFF022K18+ AATTCCGGTTGGGGAGGAAATGGATATGGATATGGTGGAGCGAAATTCGATGAGTTTGAG
____________________________________________________________
consensus AATTCCGGTTGGGGAGGAAATGGATATGGATATGGTGGAGCGAAATTCGATGAGTTTGAG
. : . : . : . : . : . :
rJMSF038J09+ GATAAGGAGTTGGTAGTTGAAAAAGAGGAGAATTTGTGCGACGGATCAGAGGTGTTCACT
rJMFF040G03+ GATAAGGAGTTGGTAGTTGAAAAAGAGGAGAATTTGTGCGACGGATCAGAGGTGTTCACT
rJMFF022K18+ GATAAGGAGTTGGTAGTTGAAAAAGAGGAGAATTTGTGCGACGGATCAGAGGTGTTCACT
____________________________________________________________
consensus GATAAGGAGTTGGTAGTTGAAAAAGAGGAGAATTTGTGCGACGGATCAGAGGTGTTCACT
. : . : . : . : . : . :
rJMSF038J09+ GAAAAAGAACATGAAATCGTGCCAACTGGTGGTGAAACCATGAACAAAATTGTTGAAGTG
rJMFF040G03+ GAAAAAGAACATGAAATCGTGCCAACTGGTGGTGAAACCATGAACAAAATTGTTGAAGTG
rJMFF022K18+ GAAAAAGAACATGAAATCGTGCCAACTGGTGGTGAAACCATGAACAAAATTGTTGAAGTG
____________________________________________________________
consensus GAAAAAGAACATGAAATCGTGCCAACTGGTGGTGAAACCATGAACAAAATTGTTGAAGTG
. : . : . : . : . : . :
rJMSF038J09+ AAGAAGGCAGAGGTGGAAAAGAAGAGTGTGGTTTGGTGGAAGGCGCCGTTTGAGCTTCTG
rJMFF040G03+ AAGAAGGCAGAGGTGGAAAAGAAGAGTGTGGTTTGGTGGAAGGCGCCGTTTGAGCTTCTG
rJMFF022K18+ AAGAAGGCAGAGGTGGAAAAGAAGAGTGTGGTTTGGTGGAAGGCGCCGTTTGAGCTTCTG
____________________________________________________________
consensus AAGAAGGCAGAGGTGGAAAAGAAGAGTGTGGTTTGGTGGAAGGCGCCGTTTGAGCTTCTG
. : . : . : . : . : . :
rJMSF038J09+ AAGTACTGTATGTTCAGGTTTAAACCTGTGTGGACCTTCTCCATGGCTGCTGCTCTGATA
rJMFF040G03+ AAGTACTGTATGTTCAGGTTTAAACCTGTGTGGACCTTCTCCATGGCTGCTGCTCTGATA
rJMFF022K18+ AAGTACTGTATGTTCAGGTTTAAACCTGTGTGGACCTTCTCCATGGCTGCTGCTCTGATA
____________________________________________________________
consensus AAGTACTGTATGTTCAGGTTTAAACCTGTGTGGACCTTCTCCATGGCTGCTGCTCTGATA
. : . : . : . : . : . :
rJMSF038J09+ GGATTTGCTATTTTGGGTCACCGAATATACAGGGTGAAGAAGAAGATAAGGAGCTTGGAG
rJMFF040G03+ GGATTTGCTATTTTGGGTCACCGAATATACAGGGTGAAGAAGAAGATAAGGAGCTTGGAG
rJMFF022K18+ GGATTTGCTATTTTGGGTCACCGAATATACAGGGTGAAGAAGAAGATAAGGAGCTTGGAG
____________________________________________________________
consensus GGATTTGCTATTTTGGGTCACCGAATATACAGGGTGAAGAAGAAGATAAGGAGCTTGGAG
. : . : . : . : . : . :
rJMSF038J09+ CTCAAAGTCACCATGGATGACAAGAAGGTATCTCAGTTCATGAGCCGTGCTGCGCGCCTT
rJMFF040G03+ CTCAAAGTCACCATGGATGACAAGAAGGTATCTCAGTTCATGAGCCGTGCTGCGCGCCTT
rJMFF022K18+ CTCAAAGTCACCATGGATGACAAGAAGGTATCTCAGTTCATGAGCCGTGCTGCGCGCCTT
____________________________________________________________
consensus CTCAAAGTCACCATGGATGACAAGAAGGTATCTCAGTTCATGAGCCGTGCTGCGCGCCTT
. : . : . : . : . : . :
rJMSF038J09+ AACGAGGCATTCTCGGTAGTGAAGCGGGTCCCTGTGATCCGGCCTCAGTTGCCAGCAACT
rJMFF040G03+ AACGAGGCATTCTCGGTAGTGAAGCGGGTCCCTGTGATCCGGCCTCAGTTGCCAGCAACT
rJMFF022K18+ AACGAGGCATTCTCGGTAGTGAAGCGGGTCCCTGTGATCCGGCCTCAGTTGCCAGCAACT
____________________________________________________________
consensus AACGAGGCATTCTCGGTAGTGAAGCGGGTCCCTGTGATCCGGCCTCAGTTGCCAGCAACT
. : . : . : . : . : . :
rJMSF038J09+ GGAGTAGCACCATGGCCAGTCATGACCAAACTTGCCCTGCAGGAAGCATGATTTGTTATA
rJMFF040G03+ GGAGTAGCACCATGGCCAGTCATGACCAAACTTGCCCTGCAGGAAGCATGATTTGTTATA
rJMFF022K18+ GGAGTAGCACCATGGCCAGTCATGACCAAACTTGCCCTGCAGGAAGCATGATTTGTTATA
____________________________________________________________
consensus GGAGTAGCACCATGGCCAGTCATGACCAAACTTGCCCTGCAGGAAGCATGATTTGTTATA
. : . : . : . : . : . :
rJMSF038J09+ TGGTTAAGATTTTAGAATTTTGTGTTTAGTTGAAGTTGTTGCTCAACTTAAAAACCTCCA
rJMFF040G03+ TGGTTAAGATTTTAGAATTTTGTGTTTAGTTGAAGTTGTTGCTCAACTTAAAAACCTCCA
rJMFF022K18+ TGGTTAAGATTTTAGAATTTTGTGTTTAGTTGAAGTTGTTGCTCAACTTAAAAACCTCCA
____________________________________________________________
consensus TGGTTAAGATTTTAGAATTTTGTGTTTAGTTGAAGTTGTTGCTCAACTTAAAAACCTCCA
. : . : . : . : . : . :
rJMSF038J09+ GTTGCACG--TTTTCTGTAAACATAGTTGAGAATGATATAGTTTATTGAACTTCAAAGGG
rJMFF040G03+ GTTGCACGTATTTTCTGTAAACATAGTTGAGAATGATATAGTTTATTGAACTTCAAAGGG
rJMFF022K18+ GTTGCACGTATTTTCTGTAAACATAGTTGAGAATGATATAGTTTATTGAACTTCAAAGGG
____________________________________________________________
consensus GTTGCACGTATTTTCTGTAAACATAGTTGAGAATGATATAGTTTATTGAACTTCAAAGGG
. : . : . : . : . : . :
rJMSF038J09+ TTGG-TTGTATTAGGACGACTACTACGCATAGAGTTTGTATCTCACCTGAA
rJMFF040G03+ TTGG-TTGTATTAGGACGACTACTACGCATAGAGTTTGTATCTCACTTGAATTATATTA
rJMFF022K18+ TTGGNTTGTATTAGGACGACTACTACGCATAGAGTTTGTATCTCACTTGAATTATATTAC
____________________________________________________________
consensus TTGG-TTGTATTAGGACGACTACTACGCATAGAGTTTGTATCTCACTTGAATTATATTAC