| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019E20 | Sequence | 570 | 010288 (4) | gb|KDO52247.1| | 1e-56 | hypothetical protein CISIN_1g0088442mg, partial [Citrus sinensis] | 668 | 008221 (5) | emb|CDP07224.1| | 2e-50 | unnamed protein product [Coffea canephora] |
| JMFF021H18 | Sequence | 581 | 010288 (4) | gb|KDO52247.1| | 2e-57 | hypothetical protein CISIN_1g0088442mg, partial [Citrus sinensis] | 727 | 008221 (5) | emb|CDP07224.1| | 5e-55 | unnamed protein product [Coffea canephora] |
| JMFF027H18 | Sequence | 512 | 010288 (4) | ref|XP_006445680.1| | 3e-41 | hypothetical protein CICLE_v10014800mg [Citrus clementina] ref|XP_006485525.1| P | 659 | 008221 (5) | ref|XP_009609900.1| | 1e-50 | PREDICTED: retinoblastoma-binding protein 5 isoform X3 [Nicotiana tomentosiform |
| JMFF041D06 | Sequence | 631 | 010288 (4) | ref|XP_002300221.2| | 1e-63 | hypothetical protein POPTR_0001s31290g [Populus trichocarpa] gb|EEE85026.2| hypo | 629 | 008221 (5) | ref|XP_009609900.1| | 9e-52 | PREDICTED: retinoblastoma-binding protein 5 isoform X3 [Nicotiana tomentosiform |
| JMSF050H16 | Sequence | 786 | 008221 (5) | emb|CDP07224.1| | 1e-70 | unnamed protein product [Coffea canephora] | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF050H16+ TCTGACTGGCTTGGCCTATATATGGGCA
____________________________________________________________
consensus TCTGACTGGCTTGGCCTATATATGGGCA
. : . : . : . : . : . :
rJMSF050H16+ AAGGATTATACTGAGAATTGGAGTGCATTTGCTCCAGATTTTAAAGAACTCGAGGAGAAT
rJMFF021H18+ GGAGAAT
____________________________________________________________
consensus AAGGATTATACTGAGAATTGGAGTGCATTTGCTCCAGATTTTAAAGAACTCGAGGAGAAT
. : . : . : . : . : . :
rJMSF050H16+ GAAGAGTATGTAGAAAGGGAAGATGAATTTGATCTGGTGCCTGAAACTGAAAAGGCAAAA
rJMFF041D06+ ACTGAAAAGGCAAAA
rJMFF019E20+ AAACTGAAAAGGCAAAA
rJMFF027H18+ AAACTGAAAAGGCAAAA
rJMFF021H18+ GAAGAGTATGTAGAAAGGGAAGATGAATTTGATCTGGTGCCTGAAACTGAAAAGGCAAAA
____________________________________________________________
consensus GAAGAGTATGTAGAAAGGGAAGATGAATTTGATCTGGTGCCTGAAACTGAAAAGGCAAAA
. : . : . : . : . : . :
rJMSF050H16+ GAACCTGATGTCAATGAAGATGAAGAAGTTGATATTGTCACAGTGGAGAAAGATACAACG
rJMFF041D06+ GAACCTGATGTCAATGAAGATGAAGAAGTTGATATTGTCACAGTGGAGAAAGATACAACG
rJMFF019E20+ GAACCTGATGTCAATGAAGATGAAGAAGTTGATATTGTCACAGTGGAGAAAGATACAACG
rJMFF027H18+ GAACCTGATGTCAATGAAGATGAAGAAGTTGATATTGTCACAGTGGAGAAAGATACAACG
rJMFF021H18+ GAACCTGATGTCAATGAAGATGAAGAAGTTGATATTGTCACAGTGGAGAAAGATACAACG
____________________________________________________________
consensus GAACCTGATGTCAATGAAGATGAAGAAGTTGATATTGTCACAGTGGAGAAAGATACAACG
. : . : . : . : . : . :
rJMSF050H16+ TTCAGTGATTCTGAAATGTCGCAGGAAGAAATTCTCTTCTTGCCTGTTGATCCAATTCCG
rJMFF041D06+ TTCAGTGATTCTGAAATGTCGCAGGAAGAAATTCTCTTCTTGCCTGTTGATCCAATTCCG
rJMFF019E20+ TTCAGTGATTCTGAAATGTCGCAGGAAGAAATTCTCTTCTTGCCTGTTGATCCAATTCCG
rJMFF027H18+ TTCAGTGATTCTGAAATGTCGCAGGAAGAAATTCTCTTCTTGCCTGTTGATCCAATTCCG
rJMFF021H18+ TTCAGTGATTCTGAAATGTCGCAGGAAGAAATTCTCTTCTTGCCTGTTGATCCAATTCCG
____________________________________________________________
consensus TTCAGTGATTCTGAAATGTCGCAGGAAGAAATTCTCTTCTTGCCTGTTGATCCAATTCCG
. : . : . : . : . : . :
rJMSF050H16+ GATCATCTTGAGCAGCAAGACAAGTGTGTTGGTAGTACTTCTAAACTTGGGGACAGCAAC
rJMFF041D06+ GATCATCTTGAGCAGCAAGACAAGTGTGTTGGTAGTACTTCAAAACTTGGGGACAGCAAC
rJMFF019E20+ GATCATCTTGAGCAGCAAGACAAGTGTGTTGGTAGTACTTCAAAACTTGGGGACAGCAAC
rJMFF027H18+ GATCATCTTGAGCAGCAAGACAAGTGTGTTGGTAGTACTTCAAAACTTGGGGACAGCAAC
rJMFF021H18+ GATCATCTTGAGCAGCAAGACAAGTGTGTTGGTAGTACTTCAAAACTTGGGGACAGCAAC
____________________________________________________________
consensus GATCATCTTGAGCAGCAAGACAAGTGTGTTGGTAGTACTTCAAAACTTGGGGACAGCAAC
. : . : . : . : . : . :
rJMSF050H16+ CAGTCGGGATCCCCTCATTCAGAAGAGGCTGAACAGAATGGGCAAACCACTAATCATGAA
rJMFF041D06+ CAGTCGGGATCCCCTCATTCAGAAGAGGCTGAACAGAATGGGCAAACCACTAATCATGAA
rJMFF019E20+ CAGTCGGGATCCCCTCATTCAGAAGAGGCTGAACAGAATGGGCAAACCACTAATCATGAA
rJMFF027H18+ CAGTCGGGATCCCCTCATTCAGAAGAGGCTGAACAGAATGGGCAAACCACTAATCATGAA
rJMFF021H18+ CAGTCGGGATCCCCTCATTCAGAAGAGGCTGAACAGAATGGGCAAACCACTAATCATGAA
____________________________________________________________
consensus CAGTCGGGATCCCCTCATTCAGAAGAGGCTGAACAGAATGGGCAAACCACTAATCATGAA
. : . : . : . : . : . :
rJMSF050H16+ TCCAGTCCTGTTGAAGCAATAGATAATTCTGCTGCTGAAGATACAAGTGCAAAACGGTTG
rJMFF041D06+ TCCAGTCCTGTTGAAGCAATAGATAATTCTGCTGCTGAAGATACAAGTGCAAAACGGTTG
rJMFF019E20+ TCCAGTCCTGTTGAAGCAATAGATAATTCTGCTGCTGAAGATACAAGTGCAAAACGGTTG
rJMFF027H18+ TCCAGTCCTGTTGAAGCAATAGATAATTCTGCTGCTGAAGATACAAGTGCAAAACGGTTG
rJMFF021H18+ TCCAGTCCTGTTGAAGCAATAGATAATTCTGCTGCTGAAGATACAAGTGCAAAACGGTTG
____________________________________________________________
consensus TCCAGTCCTGTTGAAGCAATAGATAATTCTGCTGCTGAAGATACAAGTGCAAAACGGTTG
. : . : . : . : . : . :
rJMSF050H16+ AGAAGGAAAAGGAAGCCTTCTGAGAAGGTATTGGAGCTGCAGGCTGAAAAGGTTAAAAAA
rJMFF041D06+ AGAAGGAAAAGGAAGCCTTCTGAGAAGGTATTGGAGCTGCAGGCTGAAAAGGTTAAAAAA
rJMFF019E20+ AGAAGGAAAAGGAAGCCTTCTGAGAAGGTATTGGAGCTGCAGGCTGAAAAGGTTAAAAAA
rJMFF027H18+ AGAAGGAAAAGGAAGCCTTCTGAGAAGGTATTGGAGCTGCAGGCTGAAAAGGTTAAAAAA
rJMFF021H18+ AGAAGGAAAAGGAAGCCTTCTGAGAAGGTATTGGAGCTGCAGGCTGAAAAGGTTAAAAAA
____________________________________________________________
consensus AGAAGGAAAAGGAAGCCTTCTGAGAAGGTATTGGAGCTGCAGGCTGAAAAGGTTAAAAAA
. : . : . : . : . : . :
rJMSF050H16+ CCACCTCAGAAGAAAACATCTGGTCAGTGGATCATCTAGGCACGACTCAAGACAAGGGCT
rJMFF041D06+ CCACCTCAGAAGAAAACATCTGGT
rJMFF019E20+ CCACCTCAGAAGAAAACATCTGGTCAGTGGATCATCTAGGCACGACTCAAGACAAGGGCT
rJMFF027H18+ CCACCTCAGAAGAAAACATCTGGTCAGTGGATCATCTAGGCACGACTCAAGACAAGGGCT
rJMFF021H18+ CCACCTCAGAAGAAAACATCTGGTCAGTGGATCATCTAGGCACGACTCAAGACAAGGGCT
____________________________________________________________
consensus CCACCTCAGAAGAAAACATCTGGTCAGTGGATCATCTAGGCACGACTCAAGACAAGGGCT
. : . : . : . : . : . :
rJMSF050H16+ TTATATCATCAGAGAAAATATTCTGTGTACAAGCACAATGGAATGATGTGCAGTGGAAAC
rJMFF019E20+ TTATATCATCAGAGAAAATATTCTGTGTACAAGCACAATGGAATGATGTGCAGTGGAAAC
rJMFF027H18+ TTATATCATCAGAGAAAATATTCTGTGTACAAGCACAATGGAATGATGTGCAGTGGAAAC
rJMFF021H18+ TTATATCATCAGAGAAAATATTCTGTGTACAAGCACAATGGAATGATGTGCAGTGGAAAC
____________________________________________________________
consensus TTATATCATCAGAGAAAATATTCTGTGTACAAGCACAATGGAATGATGTGCAGTGGAAAC
. : . : . : . : . : . :
rJMSF050H16+ TGGAATGTAGCTAGTGATGTCTTTACAGGAGGCTTAGACATCAAATTTAATGTGTTGTAA
rJMFF019E20+ TGGAATGTAGCTAGTGATGTCTTTACAGGAGGCTTAGACATCAAATTTAATGTGTTGTAA
rJMFF027H18+ TGGAATGTAGCTAGTGATGTCTTTACAGGAGGCTTAGACATCAAATTTAATGTGTTGTAA
rJMFF021H18+ TGGAATGTAGCTAGTGATGTCTTTACAGGAGGCTTAGACATCAAATTTAATGTGTTGTAA
____________________________________________________________
consensus TGGAATGTAGCTAGTGATGTCTTTACAGGAGGCTTAGACATCAAATTTAATGTGTTGTAA
. : . : . : . : . : . :
rJMSF050H16+ TTTCACAGCAAATTGATTTACTGTAGCATAGTTTGTATTATTTATTTGGGAGTTGGGCAG
rJMFF019E20+ TTTCACAGCAAATTGATTTACTGTAGCATAGTTTGTATTATTTATTTGGGAGTTGGGCAG
rJMFF027H18+ TTTCACAGCAAATTGATTTACTGTAGCATAGTTTGTATTATTTATTTGGGAGTTGGGCAG
rJMFF021H18+ TTTCACAGCAAATTGATTTACTGTAGCATAGTTTGTATTATTTATTTGGGAGTTGGGCAG
____________________________________________________________
consensus TTTCACAGCAAATTGATTTACTGTAGCATAGTTTGTATTATTTATTTGGGAGTTGGGCAG
. : . : . : . : . : . :
rJMSF050H16+ CTAGCAGCCTTTTGCATATCTCTCATGACAACCCTTTT
rJMFF019E20+ CTAGCAGCCTTTTGCATATCTCTCATGACAACCCTTTTTCCTTATATAATT
rJMFF027H18+ CTAGCAGCCTTTTGCATATCTCTCATGACAACCCTTTT
rJMFF021H18+ CTAGCAGCCTTTTGCATATCTCTCATGACAACCCTTTTTCCTTATATAATTAGAAGACTT
____________________________________________________________
consensus CTAGCAGCCTTTTGCATATCTCTCATGACAACCCTTTTTCCTTATATAATTAGAAGACTT