| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019J12 | Sequence | 563 | 000101 (3) | ref|XP_006353341.1| | 2e-101 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum] | 791 | 008212 (3) | ref|XP_007038628.1| | 1e-35 | XB3 in isoform 3 [Theobroma cacao] ref|XP_007038629.1| XB3 in isoform 3 [Theobro |
| JMFF020B23 | Sequence | 627 | 000101 (3) | ref|XP_006353341.1| | 2e-117 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum] | 736 | 008212 (3) | ref|XP_007038628.1| | 5e-32 | XB3 in isoform 3 [Theobroma cacao] ref|XP_007038629.1| XB3 in isoform 3 [Theobro |
| JMSF036C11 | Sequence | 728 | 000101 (3) | ref|XP_006353341.1| | 1e-136 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum] | 741 | 008212 (3) | ref|XP_009780428.1| | 6e-40 | PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF036C11+ TATGTACGCCAT
rJMFF019J12+ ATGTACGCCAT
____________________________________________________________
consensus TATGTACGCCAT
. : . : . : . : . : . :
rJMSF036C11+ GCATGCTTCATACTGATGAGCAAGACGACAACCA-TTCAACATCTAGCAGTGCACAGAAT
rJMFF020B23+ TAGCAGTGCACAGAAT
rJMFF019J12+ GCATGCTTCATACTGATGAGCAAGACGACAACCATTTCAACATTTAGCAGTGCACAGAAT
____________________________________________________________
consensus GCATGCTTCATACTGATGAGCAAGACGACAACCATTTCAACATTTAGCAGTGCACAGAAT
. : . : . : . : . : . :
rJMSF036C11+ ATTAGAAGGAACCGTGTAGCTTCAGTTTCTTCAGATATTTTTTGTCCTGCCACGTGTAAC
rJMFF020B23+ ATTAGAAGGAACCGTGTAGCTTCAGTTTCTTCAGATATTTTTTGTCNTGCCACGTGTAAC
rJMFF019J12+ ATTAGAAGGAACCGTGTAGCTTCAGTTTCTTCAGATATTTTTTGTCCTGCCACGTGTAAC
____________________________________________________________
consensus ATTAGAAGGAACCGTGTAGCTTCAGTTTCTTCAGATATTTTTTGTCCTGCCACGTGTAAC
. : . : . : . : . : . :
rJMSF036C11+ CCCTTTCCTTCTGTTGCTATCCCTTTGTGCACATGCAATGAGGGGCCATGCCCGACTTTT
rJMFF020B23+ CCCTTTCCTTCTGTTGCTATCCCTTTGTGCACATGCAATGAGGGGCCATGCCCGACTTTT
rJMFF019J12+ CCCTTTCCTTCTGTTGCTATCCCTTTGTGCACATGCAATGAGGGGCCATGCCCGACTTTT
____________________________________________________________
consensus CCCTTTCCTTCTGTTGCTATCCCTTTGTGCACATGCAATGAGGGGCCATGCCCGACTTTT
. : . : . : . : . : . :
rJMSF036C11+ GAATCCAGAGATAATGAAGTTCAAGAGGGGTCTCACCATCAATCAGAATCGACATCAGAG
rJMFF020B23+ GAATCCAGAGATAATGAAGTTCAAGAGGGGTCTCACCATCAATCAGAATCGACATCAGAG
rJMFF019J12+ GAATCCAGAGATAATGAAGTTCAAGAGGGGTCTCACCATCAATCAGAATCGACATCAGAG
____________________________________________________________
consensus GAATCCAGAGATAATGAAGTTCAAGAGGGGTCTCACCATCAATCAGAATCGACATCAGAG
. : . : . : . : . : . :
rJMSF036C11+ GAGCAAGAGAAGATGGGAGGAGTAAGGTTGGAGAAAACTACGTGCTCAAGCATGTTTTGG
rJMFF020B23+ GAGCAAGAGGAGATGGGAGGAGTAAGGTTGGAGAAAACTACGTGCTCAAGCATGTTTTGG
rJMFF019J12+ GAGCAAGAGAAGATGGGAGGAGTAAGGTTGGAGAAAACTACGTGCTCAAGCATGTTTTGG
____________________________________________________________
consensus GAGCAAGAGAAGATGGGAGGAGTAAGGTTGGAGAAAACTACGTGCTCAAGCATGTTTTGG
. : . : . : . : . : . :
rJMSF036C11+ GGCAGAAGGAGCTGCAGCAGGGAGAATCAGTGTAATGCTGAAATTAATGCTTGAACCACC
rJMFF020B23+ GGCAGAAGGAGCTGCAGCAGGGAGAATCAGTGTAATGCTGAAATTAATGCTTGAACCACC
rJMFF019J12+ GGCAGAAGGAGCTGCAGCAGGGAGAATCAGTGTAATGCTGAAATTAATGCTTGAACCACC
____________________________________________________________
consensus GGCAGAAGGAGCTGCAGCAGGGAGAATCAGTGTAATGCTGAAATTAATGCTTGAACCACC
. : . : . : . : . : . :
rJMSF036C11+ CCCCTTGGTTTGGAAACATATCCATAGAGGGATGGAACTTTGTGAACAGAGCAGTTAACG
rJMFF020B23+ CCCCTTGGTTTGGAAACATATCCATAGAGGGATGGAACTTTGTGAACAGAGCAGTTAACG
rJMFF019J12+ CCCCTTGGTTTGGAAACATATCCATAGAGGGATGGAACTTTGTGAACAGAGCAGTTAACG
____________________________________________________________
consensus CCCCTTGGTTTGGAAACATATCCATAGAGGGATGGAACTTTGTGAACAGAGCAGTTAACG
. : . : . : . : . : . :
rJMSF036C11+ ATGAAATCACCATACTTTCGCATGTTGTTCTCTTGGCTTGGCTTGGCTGGTGTTGTGATA
rJMFF020B23+ ATGAAATCACCATACTTTCGCATGTTGTTCTCTTGGCTTGGCTTGGCTGGTGTTGTGATA
rJMFF019J12+ ATGAAATCACCATACTTTCGCATGTTGTTCTCTTGGCTTGGCTTGGCTGGTGTTGTGATA
____________________________________________________________
consensus ATGAAATCACCATACTTTCGCATGTTGTTCTCTTGGCTTGGCTTGGCTGGTGTTGTGATA
. : . : . : . : . : . :
rJMSF036C11+ AATTATCCAGGTCAGGAATTGCAATGTCTTGACCCATATTAGATTGCCTAAAGACGCATG
rJMFF020B23+ AATTATCCAGGTCAGGAATTGCAATGTCTTGACCCATATTAGATTGCCTAAAGACGCATG
rJMFF019J12+ AATTATCCAGGTCAGGAATTGCAATGTCTTGACCCATATTAGATTGCCTAAAGACGCATG
____________________________________________________________
consensus AATTATCCAGGTCAGGAATTGCAATGTCTTGACCCATATTAGATTGCCTAAAGACGCATG
. : . : . : . : . : . :
rJMSF036C11+ GCCTCTGGGTGGTGGCTTTTAAAGTAATCCAACATTGAGAATACAGTGTGGTTGAAATAT
rJMFF020B23+ GCCTCTGGGTGGTGGCTTTTAAAGTAATCCAACATTGAGAATACAGTGTGGTTGAAATAT
rJMFF019J12+ GCCTCTGGGTGGTGGCTTTTAAAGTAATCCAACATTGAGAATACAGTGTGGTTGAAATAT
____________________________________________________________
consensus GCCTCTGGGTGGTGGCTTTTAAAGTAATCCAACATTGAGAATACAGTGTGGTTGAAATAT
. : . : . : . : . : . :
rJMSF036C11+ ACAAGATTGGCATTTGTAGTTGGAGGCCGAGGCCCCGTCTGTAGTAAGTGAGCATTTTGT
rJMFF020B23+ ACAAGATTGGCATTTGTAGTTGGAGGCCGAGGCCCCGTCTGTAGTAAGTGAGCATTTTGT
rJMFF019J12+ ACAAGATTGGCATTTGTAGTTGGAGGCCGAGGCCCCGTCTGTAGTAAGTGAGCATTTTGT
____________________________________________________________
consensus ACAAGATTGGCATTTGTAGTTGGAGGCCGAGGCCCCGTCTGTAGTAAGTGAGCATTTTGT
. : . : . : . : . : . :
rJMSF036C11+ ATTGTTTCTAGGAGATTAGTGATGTTTGTAAATGTGAATCCTTAGGGTGGTGGGTGTGTA
rJMFF020B23+ ATTGTTTCTAGGAGATTAGTGATGTTTGTAAATGTGAATCCTTAGGGTGGTGGGTGTGTA
rJMFF019J12+ ATTGTTTCTAGGAGATTAGTGATGTTTGTAAATGTGAATCCTTAGGGTGGTGGGTGTGTA
____________________________________________________________
consensus ATTGTTTCTAGGAGATTAGTGATGTTTGTAAATGTGAATCCTTAGGGTGGTGGGTGTGTA
. : . : . : . : . : . :
rJMSF036C11+ AAGCTGCTGA
rJMFF020B23+ AAGCTGCTGATAAACAAGTGAATGTAAGGGAAGGAAATATATTTGCATCAT
rJMFF019J12+ AAGCTGCTGATAAACAAGTGAATGTAAGGGAAGGAAATATATTTGCATCATTNTACAAAA
____________________________________________________________
consensus AAGCTGCTGATAAACAAGTGAATGTAAGGGAAGGAAATATATTTGCATCATTNTACAAAA