Contig 008211:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019I22Sequence543010214 (4)ref|XP_002312854.1|2e-85chaperonin family protein [Populus trichocarpa] gb|EEE86809.1| chaperonin family713008211 (2)ref|XP_007048315.1|2e-75TCP-1/cpn60 chaperonin family protein [Theobroma cacao] gb|EOX92472.1| TCP-1/cpn
JMSF038C14Sequence667010214 (4)ref|XP_011006278.1|349PREDICTED: T-complex protein 1 subunit eta-like [Populus euphratica]804008211 (2)ref|XP_007048315.1|2e-100TCP-1/cpn60 chaperonin family protein [Theobroma cacao] gb|EOX92472.1| TCP-1/cpn

Alignment

This contig is upended


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rJMSF038C14+                                    TGGTGGAGCAGATCAGTTCATTGAAGAAGCTGAG
                      ____________________________________________________________
consensus                                       TGGTGGAGCAGATCAGTTCATTGAAGAAGCTGAG
 
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rJMSF038C14+          AGAAGCCTGCATGATGCAATTATGATTGTTAGAAGAGCTGTAAAAAATTCTACTGTTGTT
                      ____________________________________________________________
consensus             AGAAGCCTGCATGATGCAATTATGATTGTTAGAAGAGCTGTAAAAAATTCTACTGTTGTT
 
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rJMSF038C14+          GCTGGTGGCGGTGCTATAGATATGGAGATTAGCCGATATTTGAGGCAGCATTCACGCACA
rJMFF019I22+                 GCGGTGCTATAGATATGGAGATTAGCCGATATTTGAGGCAGCATTCACGCACA
                      ____________________________________________________________
consensus             GCTGGTGGCGGTGCTATAGATATGGAGATTAGCCGATATTTGAGGCAGCATTCACGCACA
 
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rJMSF038C14+          ATAAAGGGGAAGTCTCAGCTCTTTATAAACTCATATGCCAAAGCCCTTGAGATTATTCCA
rJMFF019I22+          ATAAAGGGGAAGTCTCAGCTCTTTATAAACTCATATGCCAAAGCCCTTGAGATTATTCCA
                      ____________________________________________________________
consensus             ATAAAGGGGAAGTCTCAGCTCTTTATAAACTCATATGCCAAAGCCCTTGAGATTATTCCA
 
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rJMSF038C14+          CGGCAATTGTGTGATAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAACTCAGACAA
rJMFF019I22+          CGGCAATTGTGTGATAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAACTCAGACAA
                      ____________________________________________________________
consensus             CGGCAATTGTGTGATAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAACTCAGACAA
 
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rJMSF038C14+          AAACATGCTCTTCCTTCAGGTGAGGGCGCACCTTATGGGGTGGATATTAATACCGGTGGC
rJMFF019I22+          AAACATGCTCTTCCTTCAGGTGAGGGCGCACCTTATGGGGTGGATATTAATACCGGTGGC
                      ____________________________________________________________
consensus             AAACATGCTCTTCCTTCAGGTGAGGGCGCACCTTATGGGGTGGATATTAATACCGGTGGC
 
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rJMSF038C14+          ATATCAAATTCATTTGCTAATTTTGTCTGGGAACCATCAGTTGTGAAGATAAATGCCATT
rJMFF019I22+          ATATCAAATTCATTTGCTAATTTTGTCTGGGAACCATCAGTTGTGAAGATAAATGCCATT
                      ____________________________________________________________
consensus             ATATCAAATTCATTTGCTAATTTTGTCTGGGAACCATCAGTTGTGAAGATAAATGCCATT
 
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rJMSF038C14+          AATGCTGCTACTGAAGCATGTTGCCTTATCCTTAGCGTGGATGAAACAGTGAAGAACCCC
rJMFF019I22+          AATGCTGCTACTGAAGCATGTTGCCTTATCCTTAGCGTGGATGAAACAGTGAAGAACCCC
                      ____________________________________________________________
consensus             AATGCTGCTACTGAAGCATGTTGCCTTATCCTTAGCGTGGATGAAACAGTGAAGAACCCC
 
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rJMSF038C14+          AAGTCTGAGAGTGCCCAGGGAGCTGCTGCAGGTGGCATGGGCGGAAGAGGCGGATTTGCT
rJMFF019I22+          AAGTCTGAGAGTGCCCAGGGAGCTGCTGCAGGTGGCATGGGCGGAAGAGGCGGATTTGCT
                      ____________________________________________________________
consensus             AAGTCTGAGAGTGCCCAGGGAGCTGCTGCAGGTGGCATGGGCGGAAGAGGCGGATTTGCT
 
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rJMSF038C14+          TCTCGGGGTCGAGGACGTGGGATGCGAAGGCGATAGGCTTTTCGCATTATTCGATTGCAT
rJMFF019I22+          TCTCGGGGTCGAGGACGTGGGATGCGAAGGCGATAGGCTTTTCGCATTATTCGATTGCAT
                      ____________________________________________________________
consensus             TCTCGGGGTCGAGGACGTGGGATGCGAAGGCGATAGGCTTTTCGCATTATTCGATTGCAT
 
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rJMSF038C14+          TTCTTCTCAATCTCAAGCTCACTATGTTACCTTCTGCAAATGATGCAGAAATCTAATGGT
rJMFF019I22+          TTCTTCTCAATCTCAAGCTCACTATGTTACCTTCTGCAAATGATGCAGAAATCTAATGGT
                      ____________________________________________________________
consensus             TTCTTCTCAATCTCAAGCTCACTATGTTACCTTCTGCAAATGATGCAGAAATCTAATGGT
 
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rJMSF038C14+          ATCATTATGCAGTGTGATGTTCCAATTTCAGATGCTCATATGTGTGTGTACTGAGTTTTT
rJMFF019I22+          ATCATTATGCAGTGTGATGTTCCAATTTCAGATGCTCATATGTGTGTGTACTGAGTTTTT
                      ____________________________________________________________
consensus             ATCATTATGCAGTGTGATGTTCCAATTTCAGATGCTCATATGTGTGTGTACTGAGTTTTT
 
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rJMSF038C14+          ATGGCATCTGATAAAGCAGTGCAAAAGAGAGAATTTCCTCGTCATCTTCTGATATAAGTA
rJMFF019I22+          ATGGCATCTGATAAAGCAGTGCAAAAGAGAGAATTTCCTCGTCATCTTCTGATATAAGTA
                      ____________________________________________________________
consensus             ATGGCATCTGATAAAGCAGTGCAAAAGAGAGAATTTCCTCGTCATCTTCTGATATAAGTA
 
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rJMSF038C14+          GATGCTGTGCGTGTTACTCCTCGCCGTTGTATAACACTTTGAAAGGGAT           
rJMFF019I22+          GATGCTGTGCGTGTTACTCCTCGCCGTTGTATAACACTTTGAAAGGGATTGATAATTAAT
                      ____________________________________________________________
consensus             GATGCTGTGCGTGTTACTCCTCGCCGTTGTATAACACTTTGAAAGGGATTGATAATTAAT