| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018P04 | Sequence | 533 | 000096 (5) | 675 | 008207 (3) | ref|XP_009782632.1| | 3e-37 | PREDICTED: protein IQ-DOMAIN 1 [Nicotiana sylvestris] ref|XP_009782633.1| PREDIC | |||
| JMFF050C21 | Sequence | 576 | 000096 (5) | ref|XP_009630260.1| | 6e-20 | PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis] ref|XP_009630261.1| P | 547 | 008207 (3) | ref|XP_009782632.1| | 9e-30 | PREDICTED: protein IQ-DOMAIN 1 [Nicotiana sylvestris] ref|XP_009782633.1| PREDIC |
| JMSF036B06 | Sequence | 640 | 000096 (5) | ref|XP_009630260.1| | 1e-06 | PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis] ref|XP_009630261.1| P | 748 | 008207 (3) | ref|XP_006350537.1| | 3e-56 | PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Solanum tuberosum] ref|XP_006350 |
This contig is upended
. : . : . : . : . : . :
rJMSF036B06+ GATCCCTTGCTTACGCTTTTGCCAACCAGCAAAAGCACCAGC
____________________________________________________________
consensus GATCCCTTGCTTACGCTTTTGCCAACCAGCAAAAGCACCAGC
. : . : . : . : . : . :
rJMSF036B06+ AGTTCCTGCACTGTGATGCTGAAGCGTTTGGGAACGAGAGGCCAGAATGGGGATGGAGTT
____________________________________________________________
consensus AGTTCCTGCACTGTGATGCTGAAGCGTTTGGGAACGAGAGGCCAGAATGGGGATGGAGTT
. : . : . : . : . : . :
rJMSF036B06+ GGCTGGAGCGGTGGATGGCTTCACAGCCCTACAACCGCTCTAAACATACTGCGGAGGCGG
rJMFF018P04+ ATACTGCGGAGGCGG
____________________________________________________________
consensus GGCTGGAGCGGTGGATGGCTTCACAGCCCTACAACCGCTCTAAACATACTGCGGAGGCGG
. : . : . : . : . : . :
rJMSF036B06+ CGCCACCGGGGAGCTCTCGCGTCACCATTTCCACCGTAGACGACGTATCTGAGAAGACGG
rJMFF018P04+ CGCCACCGGGGAGCTCTCGCGTCACCATTTCCACCGTAGACGACGTATCTGAGAAGACGG
____________________________________________________________
consensus CGCCACCGGGGAGCTCTCGCGTCACCATTTCCACCGTAGACGACGTATCTGAGAAGACGG
. : . : . : . : . : . :
rJMSF036B06+ TGGAGATGGACTTCGCCAGCTCTATCCCGCCGGAAAACATCAATTCCGGGCGTCACAGCG
rJMFF050C21+ GGAGATGGACTTCGCCAGCTCTATCCCGCCGGAAAACATCAATTCCGGGCGTCACAGCG
rJMFF018P04+ TGGAGATGGACTTCGCCAGCTCTATCCCGCCGGAAAACATCAATTCCGGGCGTCACAGCG
____________________________________________________________
consensus TGGAGATGGACTTCGCCAGCTCTATCCCGCCGGAAAACATCAATTCCGGGCGTCACAGCG
. : . : . : . : . : . :
rJMSF036B06+ TCAACCAATCAGAAGCAAGCCCGTTTACATCGCGCGGACACCGCCGGCAATCACAGACGA
rJMFF050C21+ TCAACCAATCAGAAGCAAGCCCGTTTACATCGCGCGGACACCGCCGGCAATCACAGACGA
rJMFF018P04+ TCAACCAATCAGAAGCAAGCCCGTTTACATCGCGCGGACACCGCCGGCAATCACAGACGA
____________________________________________________________
consensus TCAACCAATCAGAAGCAAGCCCGTTTACATCGCGCGGACACCGCCGGCAATCACAGACGA
. : . : . : . : . : . :
rJMSF036B06+ GCTTCGACGGCGTTCCGAGCTACATGGCGCCGACCAAGTCGGCAAAAGCGAAGGTGAGAA
rJMFF050C21+ GCTTCGACGGCGTTCCGAGCTACATGGCGCCGACCAAGTCGGCAAAAGCGAAGGTGAGAA
rJMFF018P04+ GCTTCGACGGCGTTCCGAGCTACATGGCGCCGACCAAGTCGGCAAAAGCGAAGGTGAGAA
____________________________________________________________
consensus GCTTCGACGGCGTTCCGAGCTACATGGCGCCGACCAAGTCGGCAAAAGCGAAGGTGAGAA
. : . : . : . : . : . :
rJMSF036B06+ GCCATGGCGGAATGAAGAACCTAAGCTCACCTTCGGCCCAATCGAACACCTCGTCCAAGA
rJMFF050C21+ GCCATGGCGGAATGAAGAACCTAAGCTCACCTTCGGCCCAATCGAACACCTCGTCCAAGA
rJMFF018P04+ GCCATGGCGGAATGAAGAACCTAAGCTCACCTTCGGCCCAATCGAACACCTCGTCCAAGA
____________________________________________________________
consensus GCCATGGCGGAATGAAGAACCTAAGCTCACCTTCGGCCCAATCGAACACCTCGTCCAAGA
. : . : . : . : . : . :
rJMSF036B06+ AAGGGACAAGTCCTGGGCTCAACTGGGAGTCAGTTTATCAGGCCCATAGAAGCCCAAGCC
rJMFF050C21+ AAGGGACAAGTCCTGGGCTCAACTGGGAGTCAGTTTATCAGGCCCATAGAAGCCCAAGCC
rJMFF018P04+ AAGGGACAAGTCCTGGGCTCAACTGGGAGTCAGTTTATCAGGCCCATAGAAGCCCAAGCC
____________________________________________________________
consensus AAGGGACAAGTCCTGGGCTCAACTGGGAGTCAGTTTATCAGGCCCATAGAAGCCCAAGCC
. : . : . : . : . : . :
rJMSF036B06+ CAAATCCAAAAGGGTTGATGAATCGTGGCGGGCAGGCCCAGTGCACTGATACGTATAGCC
rJMFF050C21+ CAAATCCAAAAGGGTTGATGAATCGTGGCGGGCAGGCCCAGTGCACTGATACGTATAGCC
rJMFF018P04+ CAAATCCAAAAGGGTTGATGAATCGTGGCGGGCAGGCACAGTGCACTGATACGTATAGCC
____________________________________________________________
consensus CAAATCCAAAAGGGTTGATGAATCGTGGCGGGCAGGCCCAGTGCACTGATACGTATAGCC
. : . : . : . : . : . :
rJMSF036B06+ CAGAATCAAGTGGAGACGACAAGACGATGTCGTTTAGGAACCATGGACGTAGACATTATT
rJMFF050C21+ CAGAATCAAGTGGAGACGACAAGACGATGTCGTTTAGGAACCATGGACGTAGACATTATT
rJMFF018P04+ CAGAATCAAGTGGAGACGACAAGACGATGTCGTTTAGGAACCATGGACGTAGACATTATT
____________________________________________________________
consensus CAGAATCAAGTGGAGACGACAAGACGATGTCGTTTAGGAACCATGGACGTAGACATTATT
. : . : . : . : . : . :
rJMSF036B06+ TTGGTTAATTATTTGGCAATAATAATGTGGATAATGTGCATTTGTGTGTTATATAGTTCT
rJMFF050C21+ TTGGTTAATTATTTGGCAATAATAATGTGGATAATGTGCATTTGTGTGTTATATAGTTCT
rJMFF018P04+ TTGGTTAATTATTTGGCAATAATAATGTGGATAATGTGCATTTGTGTGTTATATAGTTCT
____________________________________________________________
consensus TTGGTTAATTATTTGGCAATAATAATGTGGATAATGTGCATTTGTGTGTTATATAGTTCT
. : . : . : . : . : . :
rJMSF036B06+ GATTACTGATGTGGGTATGACGTCATGTATTGGGTTTGCATACGCA
rJMFF050C21+ GATTACTGATGTGGGTATGACGTCATGTATTGGGTTTGCATACGCATTGTGAGTATTACT
rJMFF018P04+ GATTACTGATGTGGGTATGACGTCATGTATTGGGTTTGCATACGCATTGTGAGTATTACT
____________________________________________________________
consensus GATTACTGATGTGGGTATGACGTCATGTATTGGGTTTGCATACGCATTGTGAGTATTACT
. : . : . : . : . : . :
rJMFF050C21+ TATATAGT
rJMFF018P04+ TATATAGTAAAGTGTATTAATTATGACTGCCAAAAACATCGCACACATACTCATACTTAA
____________________________________________________________
consensus TATATAGTAAAGTGTATTAATTATGACTGCCAAAAACATCGCACACATACTCATACTTAA