| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017G21 | Sequence | 555 | 008202 (2) | ref|XP_009780405.1| | 2e-39 | PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Nicotiana sylvestris] | 628 | 008202 (2) | ref|XP_009780405.1| | 8e-35 | PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF017G21- AAAAAAAAAAATTAAAATGAAGAAGTAG
____________________________________________________________
consensus AAAAAAAAAAATTAAAATGAAGAAGTAG
. : . : . : . : . : . :
JMFF017G21+ CGGCCAAAAATGTGG
rJMFF017G21- AGCTGTANAATTTACACGAGCGAGCACAAATGAAAATCCCAAACGCGGCCAAAAATGTGG
____________________________________________________________
consensus AGCTGTANAATTTACACGAGCGAGCACAAATGAAAATCCCAAACGCGGCCAAAAATGTGG
. : . : . : . : . : . :
JMFF017G21+ GACCCCCCACGAAAACCGGAAACTACCAACACTGATCGCTCTCCCATCTCCGGGTCATAC
rJMFF017G21- GACCCCCCACGAAAACCGGAAACTACCAACACTGATCGCTCTCCCATCTCCGGGTCATAC
____________________________________________________________
consensus GACCCCCCACGAAAACCGGAAACTACCAACACTGATCGCTCTCCCATCTCCGGGTCATAC
. : . : . : . : . : . :
JMFF017G21+ AAGACCCGGCGCTATAACCGCTCAACCCGTTCCGCCCCCGGCTGCCCACTCTCAACTTCA
rJMFF017G21- AANACCCGGNGCTATAACCGCTCAACCCGTTCCGCCCCCGGNTGCCCACTCTCAACTTCA
____________________________________________________________
consensus AAGACCCGGCGCTATAACCGCTCAACCCGTTCCGCCCCCGGCTGCCCACTCTCAACTTCA
. : . : . : . : . : . :
JMFF017G21+ GGTCGTATAACGCACGCGACTCCGGATCGGAGAGCGTGGCGTATGCGTTTTGTATCTCCA
rJMFF017G21- GGTCGTATAACGCACGCGACTCCGGATCGGANAGCGNGGCGTATGCGTTTTGTATCTCCA
____________________________________________________________
consensus GGTCGTATAACGCACGCGACTCCGGATCGGAGAGCGTGGCGTATGCGTTTTGTATCTCCA
. : . : . : . : . : . :
JMFF017G21+ TGAAAAGGTGTCCGTCCGACGACGACTCCTCTTCGAAGCGAGCGGCGGCATCGGGGTGAT
rJMFF017G21- TGAAAAGGNGTCCGTCCGACNACNACTCCTCTTCNAAGCGAGCGGCGGCATCGGGGNGAT
____________________________________________________________
consensus TGAAAAGGTGTCCGTCCGACGACGACTCCTCTTCGAAGCGAGCGGCGGCATCGGGGTGAT
. : . : . : . : . : . :
JMFF017G21+ AAATCTTCGCTAACGTTCGATAGGCCGCTTTGATCTCCCTCGGCGACGCGTTCTGCTTCA
rJMFF017G21- AAATCTTCNCTAACGTTCGATAGGCCGCTTTGATCTCCCTCGGCGACGCGTTCTGCTTCA
____________________________________________________________
consensus AAATCTTCGCTAACGTTCGATAGGCCGCTTTGATCTCCCTCGGCGACGCGTTCTGCTTCA
. : . : . : . : . : . :
JMFF017G21+ CTCTTAGAACCTCGTAGAGGCTCCCCGGCCCTCTCATCTCCACCGCCGGTGCCGCCTCGG
rJMFF017G21- CTCTTAAAACCTCGNAAAGGCTCCCCGGCCCTCTCATCTCCACCGCCGGNGCCGCCTCGG
____________________________________________________________
consensus CTCTTAGAACCTCGTAGAGGCTCCCCGGCCCTCTCATCTCCACCGCCGGTGCCGCCTCGG
. : . : . : . : . : . :
JMFF017G21+ CCATGGCCGAGGAAATCACCGGTCTCCGTAGCTTCGCTCCCTCGAGTTGCATTTTCCGGC
rJMFF017G21- CCATGGCCGAGGAAATCACCGGTCTCCGNAGCTTCNCTCCCTCGAGTTGCATTTTCCGGC
____________________________________________________________
consensus CCATGGCCGAGGAAATCACCGGTCTCCGTAGCTTCGCTCCCTCGAGTTGCATTTTCCGGC
. : . : . : . : . : . :
JMFF017G21+ TTGATCTAACGGCTCCGGAGGAAACAGAAGCAGAAAGGTTTAGCGTGTGGAGCATTTGAA
rJMFF017G21- TTGATCTAACGGCTCCGGAGGAAACAGAAGCAAAAAGGTTTAGCGNGTGGAGCATTTGAA
____________________________________________________________
consensus TTGATCTAACGGCTCCGGAGGAAACAGAAGCAGAAAGGTTTAGCGTGTGGAGCATTTGAA
. : . : . : . : . : . :
JMFF017G21+ AATTGAAGGAGGAGGAGAAGAAGAAGAGAATATGAATGATTAGAGGAATGATTGAGAATT
rJMFF017G21- AATTGAAGGAGGAGGAGAAGAANAANAGAATATGAATGATTANAGGAATGATTGAAAATT
____________________________________________________________
consensus AATTGAAGGAGGAGGAGAAGAAGAAGAGAATATGAATGATTAGAGGAATGATTGAGAATT