| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009K06 | Sequence | 594 | 008200 (10) | ref|XP_011003959.1| | 3e-87 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Populus eup | 824 | 008200 (10) | ref|XP_009588299.1| | 1e-135 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Nicotiana t |
| JMFF016L07 | Sequence | 282 | 008200 (10) | ref|XP_009787812.1| | 2e-37 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial-like [Nicoti | |||||
| JMFF016L16 | Sequence | 592 | 008200 (10) | ref|XP_011003959.1| | 2e-86 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Populus eup | 853 | 008200 (10) | ref|XP_006345780.1| | 9e-144 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial-like [Solanu |
| JMSF030O13 | Sequence | 675 | 008200 (10) | ref|XP_011003959.1| | 6e-103 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Populus eup | 737 | 008200 (10) | ref|XP_009588299.1| | 1e-127 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Nicotiana t |
| JMSF042P15 | Sequence | 577 | 014741 | ref|XP_004235838.1| | 2e-90 | PREDICTED: DNA-directed RNA polymerase V subunit 7 [Solanum lycopersicum] | 545 | 008200 (10) | ref|XP_009787812.1| | 2e-75 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial-like [Nicoti |
| JMSF045J18 | Sequence | 792 | 008200 (10) | ref|XP_009785442.1| | 6e-132 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Nicotiana s | 691 | 008200 (10) | ref|XP_009787812.1| | 2e-101 | PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial-like [Nicoti |
This contig is upended
. : . : . : . : . : . :
JMSF030O13- GACAGCAGGT
____________________________________________________________
consensus GACAGCAGGT
. : . : . : . : . : . :
JMSF030O13- CAGCCACTGTGTGGAGCACAACTGCGATGGCTCTCTCATTTGCTCAATCTACCTTCTTCG
JMFF009K06- GGAGCACAACTGCGATGGCTCTCTCATTTGCTCAATCTACCTTCTTCG
JMFF016L16- GGAGCACAACTGCGATGGCTCTCTCATTTGCTCAATCTACCTTCTTCG
JMSF045J18- GGAGCACAACTGCGATGGCTCTCTCATTTGCTCAATCTACCTTCTTCG
____________________________________________________________
consensus CAGCCACTGTGTGGAGCACAACTGCGATGGCTCTCTCATTTGCTCAATCTACCTTCTTCG
. : . : . : . : . : . :
JMSF030O13- TCTCCACTAGGCCCTCTCTCTTCCTCCGCAGAAATGGCGGCAGCCTTAAACGATGTAATG
JMFF009K06- TCTCCACTAGGCCCTCTCTCTTCCTCCGCAGAAATGGCGGCAGCCTTAAACGATGTAATG
JMFF016L16- TCTCCACTAGGCCCTCTCTCTTCCTCCGCAGAAATGGCGGCAGCCTTAAACGATGTAATG
JMSF045J18- TCTCCACTAGGCCCTCTCTCTTCCTCCGCAGAAATGGCGGCAGCCTTAAACGATGTAATG
____________________________________________________________
consensus TCTCCACTAGGCCCTCTCTCTTCCTCCGCAGAAATGGCGGCAGCCTTAAACGATGTAATG
. : . : . : . : . : . :
JMSF030O13- TTCTCGCCTGTTTCACCAACTATTCTTCTTCCTTTCCCTATTCTACTGGTGCTATGCCTG
JMFF009K06- TTCTCGCCTGTTTCACCAACTATTCTTCTTCCTTTCCCTATTCTACTGGTGCTATGCCTG
JMFF016L16- TTCTCGCCTGTTTCACCAACTATTCTTCTTCCTTTCCCTATTCTACTGGTGCTATGCCTG
JMSF045J18- TTCTCGCCTGTTTCACCAACTATTCTTCTTCCTTTCCCTATTCTACTGGTGCTATGCCTG
____________________________________________________________
consensus TTCTCGCCTGTTTCACCAACTATTCTTCTTCCTTTCCCTATTCTACTGGTGCTATGCCTG
. : . : . : . : . : . :
JMSF030O13- CAGATAACAAAGCCCCCGTCCATCGCCACAGGTGGAGGGCACCCGTCGCCTCAGTTCTTG
JMFF009K06- CAGATAACAAAGCCCCCGTCCATCGCCACAGGTGGAGGGCACCCGTCGCCTCAGTTCTTG
JMFF016L16- CAGATAACAAAGCCCCCGTCCATCGCCACAGGTGGAGGGCACCCGTCGCCTCAGTTCTTG
JMSF045J18- CAGATAACAAAGCCCCCGTCCATCGCCACAGGTGGAGGGCACCCGTCGCCTCAGTTCTTG
____________________________________________________________
consensus CAGATAACAAAGCCCCCGTCCATCGCCACAGGTGGAGGGCACCCGTCGCCTCAGTTCTTG
. : . : . : . : . : . :
JMSF030O13- AGCTTGGTGGCCTCAAGGTTTCCAAGGATGAAATAGTGAGGGATGACCCTACGAACAATG
JMFF009K06- AGCTTGGTGGCCTCAAGGTTTCCAAGGATGAAATAGTGAGGGATGACCCTACGAACAATG
JMFF016L16- AGCTTGGTGGCCTCAAGGTTTCCAAGGATGAAATAGTGAGGGATGACCCTACGAACAATG
JMSF045J18- AGCTTGGTGGCCTCAAGGTTTCCAAGGATGAAATAGTGAGGGATGACCCTACGAACAATG
____________________________________________________________
consensus AGCTTGGTGGCCTCAAGGTTTCCAAGGATGAAATAGTGAGGGATGACCCTACGAACAATG
. : . : . : . : . : . :
JMSF030O13- TCCCAGATACAATATTCTCAAAGCTGGGAATGCAGCTTCATAGGAGGGATCAACATCCAC
JMFF009K06- TCCCAGATACAATATTCTCAAAGCTGGGAATGCAGCTTCATAGGAGGGATCAACATCCAC
JMFF016L16- TCCCAGATACAATATTCTCAAAGCTGGGAATGCAGCTTCATAGGAGGGATCAACATCCAC
JMSF045J18- TCCCAGATACAATATTCTCAAAGCTGGGAATGCAGCTTCATAGGAGGGATCAACATCCAC
____________________________________________________________
consensus TCCCAGATACAATATTCTCAAAGCTGGGAATGCAGCTTCATAGGAGGGATCAACATCCAC
. : . : . : . : . : . :
JMSF030O13- TTGGTATCCTGAAGAATGCAATCTTTGATTACTTTGACACGAATTATCCAAACAAATTTG
JMFF009K06- TTGGTATCCTGAAGAATGCAATCTTTGATTACTTTGACACGAATTATCCAAACAAATTTG
JMFF016L16- TTGGTATCCTGAAGAATGCAATCTTTGATTACTTTGACACGAATTATCCAAACAAATTTG
JMSF045J18- TTGGTATCCTGAAGAATGCAATCTTTGATTACTTTGACACGAATTATCCAAACAAATTTG
____________________________________________________________
consensus TTGGTATCCTGAAGAATGCAATCTTTGATTACTTTGACACGAATTATCCAAACAAATTTG
. : . : . : . : . : . :
JMSF030O13- ACAAGTTTGATGATCTATGCCCTATAGTTTCTGTTAAACAGAACTTTGATGATGTACTGG
JMFF009K06- ACAAGTTTGATGATCTATGCCCTATAGTTTCTGTTAAACAGAACTTTGATGATGTACTGG
JMFF016L16- ACAAGTTTGATGATCTATGCCCTATAGTTTCTGTTAAACAGAACTTTGATGATGTACTGG
JMSF045J18- ACAAGTTTGATGATCTATGCCCTATAGTTTCTGTTAAACAGAACTTTGATGATGTACTGG
____________________________________________________________
consensus ACAAGTTTGATGATCTATGCCCTATAGTTTCTGTTAAACAGAACTTTGATGATGTACTGG
. : . : . : . : . : . :
JMSF030O13- TACCTCCTGATCATGTTAGCAGGAGCTACAATGATACATATTACGTGGACTCTCAAACTG
JMFF009K06- TACCTCCTGATCATGTTAGCAGGAGCTACAATGATACATATTACGTGGACTCTCAAACTG
JMFF016L16- TACCTCCTGATCATGTTAGCAGGAGCTACAATGATACATATTACGTGGACTCTCAAACTG
JMSF045J18- TACCTCCTGATCATGTTAGCAGGAGCTACAATGATACATATTACGTGGACTCTCAAACTG
____________________________________________________________
consensus TACCTCCTGATCATGTTAGCAGGAGCTACAATGATACATATTACGTGGACTCTCAAACTG
. : . : . : . : . : . :
JMSF030O13- TTTTGAGGTGCCACACAAGTGCACATCAAGCTGAGTTACTGAGCAGGGGTCATACTCATT
JMFF009K06- TTTTGAGGTGCCACACAAGTGCACATCAAGCTGAGTTACTGAGCAGGGGTCATACTCATT
JMFF016L16- TTTTGAGGTGCCACACAAGTGCACATCAAGCTGAGTTACTGAGCAGGGGTCATACTCATT
JMSF045J18- TTTTGAGGTGCCACACAAGTGCACATCAAGCTGAGTTACTGAGCAGGGGTCATACTCATT
____________________________________________________________
consensus TTTTGAGGTGCCACACAAGTGCACATCAAGCTGAGTTACTGAGCAGGGGTCATACTCATT
. : . : . : . : . : . :
JMSF030O13- TCCTTGTTACTGGAGATGTTTACCGTAGAGATTCTATTGACTCAACTCACTACCCTGTTT
JMFF009K06- TC
JMFF016L16- TC
JMSF045J18- TCCTTGTTACTGGAGATGTTTACCGTAGAGATTCTATTGACTCAACTCACTACCCTGTTT
____________________________________________________________
consensus TCCTTGTTACTGGAGATGTTTACCGTAGAGATTCTATTGACTCAACTCACTACCCTGTTT
. : . : . : . : . : . :
JMSF030O13- TCCAC
JMSF045J18- TCCACCAGATGGAAGGAGTTCGGGTCTTTTCTCCAAATGATTGGGAGGGATCAGGCACTG
rJMFF009K06+ GGGATCAGNCACTG
rJMFF016L16+ GGGATCAGGCACTG
____________________________________________________________
consensus TCCACCAGATGGAAGGAGTTCGGGTCTTTTCTCCAAATGATTGGGAGGGATCAGGCACTG
. : . : . : . : . : . :
JMSF045J18- ATGCCACATCTTATGCTGCTGCAGATCTAAAGATATGTCTCGAGGGATTGGCTCAACATT
rJMFF009K06+ ATGCCACATCTTATGCTGCTGCAGATCTAAAGATATGTCTCGAGGGATTGGCTCAACATT
rJMFF016L16+ ATGCCACATCTTATGCTGCTGCAGATCTAAAGATATGTCTCGAGGGATTGGCTCAACATT
____________________________________________________________
consensus ATGCCACATCTTATGCTGCTGCAGATCTAAAGATATGTCTCGAGGGATTGGCTCAACATT
. : . : . : . : . : . :
JMSF045J18- TATTTGGTGGTGTGGAGAT
rJMSF030O13+ ATTTGGTGGTGTGGAGATGCGTTGGGTCGACACATACTTTCCCTTTACCAATCCATCAT
rJMFF009K06+ TATTTGGTGGTGTGGAGATGCGTTGGGTCGACACATACTTTCCCTTTACCAATCCATCAT
rJMFF016L16+ TATTTGGTGGTGTGGAGATGCGTTGGGTCGACACATACTTTCCCTTTACCAATCCATCAT
____________________________________________________________
consensus TATTTGGTGGTGTGGAGATGCGTTGGGTCGACACATACTTTCCCTTTACCAATCCATCAT
. : . : . : . : . : . :
rJMSF030O13+ TCGAATTAGAGATATATTTTCAGGAAAAGTGGATGGAAGTATTAGGTTGT-GGGGTAACA
rJMFF009K06+ TCGAATTAGAGATATATTTTCAGGAAAAGTGGATGGAAGTATTAGGTTGT-GGGGTAACA
rJMSF045J18+ AAAAGTGGATGGAAGTATTAGGTTGTGGGGGTAACA
rJMFF016L16+ TCGAATTAGAGATATATTTTCAGGAAAAGTGGATGGAAGTATTAGGTTGT-GGGGTAACA
____________________________________________________________
consensus TCGAATTAGAGATATATTTTCAGGAAAAGTGGATGGAAGTATTAGGTTGT-GGGGTAACA
. : . : . : . : . : . :
rJMSF030O13+ GAGCAAGAAATACTGAAAAGAAGTGGGAGAACCAATAATGTTGCTTGGGCTTTTGGACTT
rJMFF009K06+ GAGCAAGAAATACTGAAAAGAAGTGGGAGAACCAATAATGTTGCTTGGGCTTTTGGACTT
rJMSF045J18+ GAGCAAGAAATACTGAAAAGAAGTGGGAGAACCAATAATGTTGCTTGGGCTTTTGGACTT
rJMFF016L16+ GAGCAAGAAATACTGAAAAGAAGTGGGAGAACCAATAATGTTGCTTGGGCTTTTGGACTT
____________________________________________________________
consensus GAGCAAGAAATACTGAAAAGAAGTGGGAGAACCAATAATGTTGCTTGGGCTTTTGGACTT
. : . : . : . : . : . :
rJMSF042P15+ TTCTCTTTGATATTCCAGATATCCGACTTTTTCTGGTC
rJMSF030O13+ GGATTGGAACGATTGGCAATGGTTCTCTTTGATATTCCAGATATCCGAC-TTTTCTGGTC
rJMFF009K06+ GGATTGGAACGATTGGCAATGGTTCTCTTTGATATTCCAGATATCCGAC-TTTTCTGGTC
rJMSF045J18+ GGATTGGAACGATTGGCAATGGTTCTCTTTGATATTCCAGATATCCGAC-TTTTCTGGTC
rJMFF016L16+ GGATTGGAACGATTGGCAATGGTTCTCTTTGATATTCCAGATATCCGAC-TTTTCTGGTC
____________________________________________________________
consensus GGATTGGAACGATTGGCAATGGTTCTCTTTGATATTCCAGATATCCGAC-TTTTCTGGTC
. : . : . : . : . : . :
rJMSF042P15+ TGCAGATGAGCGTTTTACTTCTCAATTTTCAAGTGGCCAACTTGGAGTGAAGTTCAAGCC
rJMSF030O13+ TGCAGATGAGCGTTTTACTTCTCAATTTTCAAGTGGCCAACTTGGAGTGAAGTTCAAGCC
rJMFF009K06+ TGCAGATGAGCGTTTTACTTCTCAATTTTCAAGTGGCCAACTTGGAGTGAAGTTCAAGCC
rJMSF045J18+ TGCAGATGAGCGTTTTACTTCTCAATTTTCAAGTGGCCAACTTGGAGTGAAGTTCAAGCC
rJMFF016L16+ TGCAGATGAGCGTTTTACTTCTCAATTTTCAAGTGGCCAACTTGGAGTGAAGTTCAAGCC
____________________________________________________________
consensus TGCAGATGAGCGTTTTACTTCTCAATTTTCAAGTGGCCAACTTGGAGTGAAGTTCAAGCC
. : . : . : . : . : . :
rJMSF042P15+ ATTTTCTAAGTATCCTCCATGCTACAAAGACATGAGTTTCTGGATCAGCGATTCATTCAC
rJMFF016L07+ TGATTCATTCNC
rJMSF030O13+ ATTTTCTAAGTATCCTCCATGCTACAAAGACATGAGTTTCTGGATCAGTGATTCATTCAC
rJMFF009K06+ ATTTTCTAAGTATCCTCCATGCTACAAAGACATGAGTTTCTGGATCAGTGATTCATTCAC
rJMSF045J18+ ATTTTCTAAGTATCCTCCATGCTACAAAGACATGAGTTTCTGGATCAGTGATTCATTCAC
rJMFF016L16+ ATTTTCTAAGTATCCTCCATGCTACAAAGACATGAGTTTCTGGATCAGTGATTCATTCAC
____________________________________________________________
consensus ATTTTCTAAGTATCCTCCATGCTACAAAGACATGAGTTTCTGGATCAGTGATTCATTCAC
. : . : . : . : . : . :
rJMSF042P15+ CGAGAACAACCTTTGTGAAGTTGTTAGAGGAATTGCCGGGGATCTTGTGGAAGAGGTGCA
rJMFF016L07+ CGAGAACAACCTTTGTGAAGTTNTTAGAGGAATTNCCGGGGATNTCGTGGAAGAGGTGCA
rJMSF030O13+ CGAGAACAACCTTTGTGAAGTTGTTAGAGGAATTGCCGGGGATCTTGTGGAAGAGGTGCA
rJMFF009K06+ CGAGAACAACCTTTGTGAAGTTGTTAGAGGAATTGCCGGGGATCTTGTGGAAGAGGTGCA
rJMSF045J18+ CGAGAACAACCCTTGTGAAGTTGTTAGAGGAATTGCCGGGGATCTTGTGGAAGAGGTGCA
rJMFF016L16+ CGAGAACAACCTTTGTGAAGTTGTTAGAGGAATTGCCGGGGATCTTGTGGAAGAGGTGCA
____________________________________________________________
consensus CGAGAACAACCTTTGTGAAGTTGTTAGAGGAATTGCCGGGGATCTTGTGGAAGAGGTGCA
. : . : . : . : . : . :
rJMSF042P15+ ACTAATCGACAACTTCACGAATAAGAAAGGAATGACCAGTCACTGCTATAGGATTGCTTA
rJMFF016L07+ ACTAATAGACAACTTCANGAATAAGAAAGGAATGACCAGTCACTGCTATAGGATTGCTTA
rJMSF030O13+ ACTAATAGACAACTTCACGAATAAGAAAGGAATGACCAGTCACTGCTATAGGATTGCTTA
rJMFF009K06+ ACTAATAGACAACTTCACGAATAAGAAAGGAATGACCAGTCACTGCTATAGGATTGCTTA
rJMSF045J18+ ACTAATAGACAACTTCACGAATAAGAAAGGAATGACCAGTCACTGCTATAGGATTGCTTA
rJMFF016L16+ ACTAATAGACAACTTCACGAATAAGAAAGGAATGACCAGTCACTGCTATAGGATTGCTTA
____________________________________________________________
consensus ACTAATAGACAACTTCACGAATAAGAAAGGAATGACCAGTCACTGCTATAGGATTGCTTA
. : . : . : . : . : . :
rJMSF042P15+ CCGATCCATGGAGCGCTCACTCACAGATGAGGAAATAAACGATTTGCAGTGGAAAGTAAG
rJMFF016L07+ CCNATCCATGGAGCGCTCACTCACAGATGAGGAAATANACGATTTGCAGTGGAAAGTAAG
rJMSF030O13+ CCGATCCATGGAGCGCTCACTCACAGATGAGGAAATAAACGATTTGCAGTGGAAAGTAAG
rJMFF009K06+ CCGATCCATGGAGCGCTCACTCACAGATGAGGAAATAAACGATTTGCAGTGGAAAGTAAG
rJMSF045J18+ CCGATCCATGGAGCGCTCACTCACAGATGAGGAAATAAACGATTTGCAGTGGAAAGTAAG
rJMFF016L16+ CCGATCCATGGAGCGCTCACTCACAGATGAGGAAATAAACGATTTGCAGTGGAAAGTAAG
____________________________________________________________
consensus CCGATCCATGGAGCGCTCACTCACAGATGAGGAAATAAACGATTTGCAGTGGAAAGTAAG
. : . : . : . : . : . :
rJMSF042P15+ AGATCAAGTGGAGAGCAAATTAAAAGTCGTTCTTAGATGAGTATTCCTTCCTT
rJMFF016L07+ AGATCAAGTGGAGAGCAAANTAAAAGTCGTTCTTAGATGAGTATTCCTTCCTTANNTTCC
rJMSF030O13+ AGATCAAGTGGAGAGCAAATTAAAAGTCGTTCTTAGATGAGTATTCCTTCCTTATTTTCC
rJMFF009K06+ AGATCAAGTGGAGAGCAAATTAAAAGTCGTTCTTAGATGAGTATTCCTTCCTT
rJMSF045J18+ AGATCAAGTGGAGAGCAAATTAAAAGTCGTTCTTAGATGAGTATTCCTTCCTTATTTTCC
rJMFF016L16+ AGATCAAGTGGAGAGCAAATTAAAAGTCGTTCTTAGATGAGTATTCCTTCCTTATTTTCC
____________________________________________________________
consensus AGATCAAGTGGAGAGCAAATTAAAAGTCGTTCTTAGATGAGTATTCCTTCCTTATTTTCC
. : . : . : . : . : . :
rJMFF016L07+ GCTTTTATTCTNTCTGTACCGGGAAAATAT
rJMSF030O13+ GCTTTTCTTCTCTCTGTACCGGGAAAATATATTATACCTTTTCTGGACTTGTTTTACCCT
rJMSF045J18+ GCTTTTCTTCTCTCTGTACCGGGAAAATATATTATACCTTTTCTGGACTTGTTTTACCCT
rJMFF016L16+ GCTTTTCTTCTCTCTGTACCGGGAAAATATATTATACCTTTTCTGGACTTGTTTTACCCT
____________________________________________________________
consensus GCTTTTCTTCTCTCTGTACCGGGAAAATATATTATACCTTTTCTGGACTTGTTTTACCCT
. : . : . : . : . : . :
rJMSF030O13+ GCTAGTTCATTGCACTTGTAGATTGTATAGGGAAAGGAAAACCTTAGTGAATTTGCTGTC
rJMSF045J18+ GCTAGTTCATTGCACTTGTAGATTGTATAGGGAAAGGAAAACCTTAGTGAATTTGCTGTC
rJMFF016L16+ GCTAGTTCATTGCACTTGTAGATTGTATAGGGAAAGGAAAACCTTAGTGGATTTGCTGTC
____________________________________________________________
consensus GCTAGTTCATTGCACTTGTAGATTGTATAGGGAAAGGAAAACCTTAGTGAATTTGCTGTC
. : . : . : . : . : . :
rJMSF030O13+ ATTATTAGTTT
rJMSF045J18+ ATTTTTAGTTTTGAAGCCAATTGTTCTAATAA
rJMFF016L16+ ATTTTTAGTTTTGAAGCCAATTGTTCTAATAATATGTCAAGAATGAGCAATAACAAGATC
____________________________________________________________
consensus ATTTTTAGTTTTGAAGCCAATTGTTCTAATAATATGTCAAGAATGAGCAATAACAAGATC