Contig 008198:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016D13Sequence616005144 (13)gb|AEA50874.1|1e-28lhy1 [Populus tremula]786008198 (5)dbj|BAK19069.1|8e-92late elongated hypocotyl homolog [Ipomoea nil]
JMFS041B10Sequence571008198 (5)dbj|BAK19069.1|2e-70late elongated hypocotyl homolog [Ipomoea nil]
JMFS078A09Sequence617008198 (5)dbj|BAK19069.1|5e-68late elongated hypocotyl homolog [Ipomoea nil]
JMFS097F08Sequence545008198 (5)dbj|BAK19069.1|2e-70late elongated hypocotyl homolog [Ipomoea nil]
JMSF029M05Sequence641005144 (13)ref|XP_007139035.1|9e-24hypothetical protein PHAVU_009G259600g [Phaseolus vulgaris] ref|XP_007139036.1| 645008198 (5)dbj|BAK19069.1|4e-74late elongated hypocotyl homolog [Ipomoea nil]

Alignment

This contig is upended


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JMFS078A09+                                       CAGCAGGGGAAGCCTGACAGAAAGTCCATTAA
                      ____________________________________________________________
consensus                                         CAGCAGGGGAAGCCTGACAGAAAGTCCATTAA
 
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JMFS078A09+           TTTTAGCTGGCTGCTATAATATAATATAATAATATAATATAATATAATTGTTGCAAGTTA
JMFS041B10+                                 AATATAATAATATAATATAATATAATTGTTGCAAGTTA
JMFS097F08+                                                                  AGTTA
rJMFF016D13-                                                                 AGTTA
                      ____________________________________________________________
consensus             TTTTAGCTGGCTGCTATAATATAATATAATAATATAATATAATATAATTGTTGCAAGTTA
 
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JMFS078A09+           TTTGAGTTGCATTTCATAGCCTCCAATTAAAACAACATATATATGGGTATATGGTACACA
JMFS041B10+           TTTGAGTTGCATTTCATAGCCTCCAATTAAAACAACATATATATGGGTATATGGTACACA
JMFS097F08+           TTTGAGTTGCATTTCATAGCCTCCAATTAAAACAACATATATATGGGTATATGGTACACA
rJMSF029M05-                                             CATATATATGGGTATATGGTACGCA
rJMFF016D13-          TTTGAGTTGCATTTCATAGCCTCCAATTAAAACAACATATATATGGGTATATGGTACACA
                      ____________________________________________________________
consensus             TTTGAGTTGCATTTCATAGCCTCCAATTAAAACAACATATATATGGGTATATGGTACACA
 
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JMFS078A09+           CACCTACACGACAAGTTTCGTGATCTTTAGGACTAGATAATTGTACAAGCAATAGGACGG
JMFS041B10+           CACCTACACGACAAGTTTCGTGATCTTTAGGACTAGATAATTGTACAAGCAATAGGACGG
JMFS097F08+           CACCTACACGACAAGTTTCGTGATCTTTAGGACTAGATAATTGTACAAGCAATAGGACGG
rJMSF029M05-          CACCTACACGACAAGTTTCGTGATCTTTAGGACTAGATAATTGTACAAGCAATAGGACGG
rJMFF016D13-          CACCTACACGACAAGTTTCGTGATCTTTAGGACTAGATAATTGTACAAGCAATAGGACGG
                      ____________________________________________________________
consensus             CACCTACACGACAAGTTTCGTGATCTTTAGGACTAGATAATTGTACAAGCAATAGGACGG
 
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JMFS078A09+           ACGACATACATGTTTGTTTGAGAATGAGAATACCAAGCAAGCCAAGCCAAAGCCCCTTAT
JMFS041B10+           ACGACATACATGTTTGTTTGAGAATGAGAATACCAAGCAAGCCAAGCCAAAGCCCCTTAT
JMFS097F08+           ACGACATACATGTTTGTTTGAGAATGAGAATACCAAGCAAGCCAAGCCAAAGCCCCTTAT
rJMSF029M05-          ACGACATACATGTTTGTTTGAGAATGAGAATACCAAGCAAGCCAAGCCAAAGCCCCTTAT
rJMFF016D13-          ACGACATACATGTTTGTTTGAGAATGAGAATACCAAGCAAGCCAAGCCAAAGCCCCTTAT
                      ____________________________________________________________
consensus             ACGACATACATGTTTGTTTGAGAATGAGAATACCAAGCAAGCCAAGCCAAAGCCCCTTAT
 
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JMFS078A09+           AAAGTTGAAGTCTCCCCTCCTCCCAAGCGAAGCCTCTTGGGACCTTTCTCTTCATCTTGA
JMFS041B10+           AAAGTTGAAGTCTCCCCTCCTCCCAAGCGAAGCCTCTTGGGACCTTTCTCTTCATCTTGA
JMFS097F08+           AAAGTTGAAGTCTCCCCTCCTCCCAAGCGAAGCCTCTTGGGACCTTTCTCTTCATCTTGA
rJMSF029M05-          AAAGTTGAAGTCTCCCCTCCTCCCAAGNGAAGCCTCTTGGGACCTTTCTCTTCATCTTGA
rJMFF016D13-          AAAGTTGAAGTCTCCCCTCCTCCCAAGCGAAGCCTCTTGGGACCTTTCTCTTCATCTTGA
                      ____________________________________________________________
consensus             AAAGTTGAAGTCTCCCCTCCTCCCAAGCGAAGCCTCTTGGGACCTTTCTCTTCATCTTGA
 
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JMFS078A09+           CAGCCCGTACTACTTCCTCCTATCCTGCTGCTCTCTTTAGCTTCCACTGAGCATCGCTTG
JMFS041B10+           CAGCCCGTACTACTTCCTCCTATCCTGCTGCTCTCTTTAGCTTCCACTGAGCATCGCTTG
JMFS097F08+           CAGCCCGTACTACTTCCTCCTATCCTGCTGCTCTCTTTAGCTTCCACTGAGCATCGCTTG
rJMSF029M05-          CAGCCCGTACTACTTCCTCCTATCCTGCTGCTCTCTTTAGCTTCCACTGAGCATCGCTTG
rJMFF016D13-          CAGCCCGTACTACTTCCTCCTATCCTGCTGCTCTCTTTAGCTTCCACTGAGCATCGCTTG
                      ____________________________________________________________
consensus             CAGCCCGTACTACTTCCTCCTATCCTGCTGCTCTCTTTAGCTTCCACTGAGCATCGCTTG
 
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JMFS078A09+           TAAGGTTTGAATCCTGTTCGGCATGCTTTCAGCTTCCCCTCTCCAAGTTTCACCGTCAGT
JMFS041B10+           TAAGGTTTGAATCCTGTTCGGCATGCTTTCAGCTTCCCCTCTCCAAGTTTCACCGTCAGT
JMFS097F08+           TAAGGTTTGAATCCTGTTCGGCATGCTTTCAGCTTCCCCTCTCCAAGTTTCACCGTCAGT
rJMSF029M05-          TAAGGTTTGAATCCTGTTCGGCATGCTNTCANCTTCCCCTCTCNAAGTTTCACCGTCAGN
rJMFF016D13-          TAAGGTTTGAATCCTGTTCGGCATGCTTTCAGCTTCCCCTCTCCAAGTTTCACCGTCAGT
                      ____________________________________________________________
consensus             TAAGGTTTGAATCCTGTTCGGCATGCTTTCAGCTTCCCCTCTCCAAGTTTCACCGTCAGT
 
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JMFS078A09+           GTGTTGTTTCCACCCCCAAAACGTGATGATGATAATGATGATTCTTTGTCCTTATTCCCA
JMFS041B10+           GTGTTGTTTCCACCCCCAAAACGTGATGATGATAATGATGATTCTTTGTCCTTATTCCCA
JMFS097F08+           GTGTTGTTTCCACCCCCAAAACGTGATGATGATAATGATGATTCTTTGTCCTTATTCCCA
rJMSF029M05-          GTGTTGTTTCCACCCCCAAAACGTGATGATGATAATGATGATTCTTTGTCCTTATTCCCA
rJMFF016D13-          GTGTTGTTTCCACCCCCAAAACGTGATGATGATAATGATGATTCTTTGTCCTTATTCCCA
                      ____________________________________________________________
consensus             GTGTTGTTTCCACCCCCAAAACGTGATGATGATAATGATGATTCTTTGTCCTTATTCCCA
 
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JMFS078A09+           TAATGAATGGAACATCTAATTGATGATGATGATTTATCATTCACCTCTAACTGTAATCCC
JMFS041B10+           TAATGAATGGAACATCTAATTGATGATGATGATTTATCATTCACCTCTAACTGTAATCCC
JMFS097F08+           TAATGAATGGAACATCTAATTGATGATGATGATTTATCATTCACCTCTAACTGTAATCCC
rJMSF029M05-          TAATGAANGGAACATCTAATTGATGATGATGATTTATCATTCACCTCTANCTGTNATCCC
rJMFF016D13-          TAATGAATGGAACATCTAATTGATGATGATGATTTATCATTCACCTCTAACTGTAATCCC
                      ____________________________________________________________
consensus             TAATGAATGGAACATCTAATTGATGATGATGATTTATCATTCACCTCTAACTGTAATCCC
 
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JMFS078A09+           TTTTGATCCTTCTCCTCATTTTGTTCACCTTTTAGCTTGCCTTTC               
JMFS041B10+           TTTTGATCCTTCTCCTCATTTTGTTCACCTTTTAGCTTGCCTTTCTCGC           
JMFS097F08+           TTTTGATCCTTCTCCTCATTTTGTTCACCTTTTAGCTTGCCTTTCTCGC           
rJMSF029M05-          TTTTGATCCTTCTCCTCATNTTGTNCACCTTTTAGCTTGCCTTTCTCGCNGNTNTTCTTT
rJMFF016D13-          TTTTGATCCTTCTCCTCATTTTGTTCACCTTTTAGCTTGCCTTTCTCGCTGTTTTTCTTT
                      ____________________________________________________________
consensus             TTTTGATCCTTCTCCTCATTTTGTTCACCTTTTAGCTTGCCTTTCTCGCTGTTTTTCTTT
 
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rJMSF029M05-          ACCTTGCTATTAAGATCANAGGGGGGAGAAAAGCTTTGGGGTAATACTTCTCTCGAGAAA
rJMFF016D13-          ACCTTGCTATTAAGATCATAGGGGGGAGAAAAGCTTTGGGGTAATACTTCTCTCGAGAAA
                      ____________________________________________________________
consensus             ACCTTGCTATTAAGATCATAGGGGGGAGAAAAGCTTTGGGGTAATACTTCTCTCGAGAAA
 
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rJMSF029M05-          AGAGCCCAAAAAGNAATT-CGTCCCTCCTCAGAGACTTCCTTCCAAGGGTCATTTGGATT
rJMFF016D13-          AGAGCCCAAAAAGCAATTCCGTCCCTCCTCAGAGACTTCCTTCCAAGGGTCATTTGGATT
                      ____________________________________________________________
consensus             AGAGCCCAAAAAGCAATTCCGTCCCTCCTCAGAGACTTCCTTCCAAGGGTCATTTGGATT
 
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rJMSF029M05-          GCNGGAGTTCTTTCCTCG                                          
rJMFF016D13-          GCTGGAGTTCTTTCCTCGTCTGTTACCAGATTCTGTGGGGTGTGGGTGTATGGTTGACAT
                      ____________________________________________________________
consensus             GCTGGAGTTCTTTCCTCGTCTGTTACCAGATTCTGTGGGGTGTGGGTGTATGGTTGACAT
 
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rJMFF016D13-          GAGGAGACTCTTTTGGATCTTCTTTATCTTTTTCAATCTTTTCCAAAGCATCTGTCTCAA
                      ____________________________________________________________
consensus             GAGGAGACTCTTTTGGATCTTCTTTATCTTTTTCAATCTTTTCCAAAGCATCTGTCTCAA