Contig 008194:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF015M20-                          AATTTTTCATCTACCCGACCATCTTTGCTAGCTTAGTCAAACTTC
JMSF023E17-                                                       AGCTTAGTCAAACTTC
rJMSF023E17+                                                                   TTC
                      ____________________________________________________________
consensus                            AATTTTTCATCTACCCGACCATCTTTGCTAGCTTAGTCAAACTTC
 
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JMFF015M20-           AGTCGGAGTAGAAGATCGGAGCAGCTGATCTCGCCGTAGAACTCCCCTCCCGTCGCCACC
JMSF023E17-           AGTCGGAGTAGAAGATCGGAGCAGCTGATCTCGCCGTAGAACTCCCCTCCCGTCGCCACC
rJMSF023E17+          AGTCGGAGTAGAAGATCGGAGCAGCTGATCTCGCCGTAGAACTCCCCTCCCGTCGCCACC
                      ____________________________________________________________
consensus             AGTCGGAGTAGAAGATCGGAGCAGCTGATCTCGCCGTAGAACTCCCCTCCCGTCGCCACC
 
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JMFF015M20-           GCCGATCAATGTTGCTCTCTACTCTGAAACCCGTCGTGGGTTGTCTTCCTTCCAGCTCCG
JMSF023E17-           GCCGATCAATGTTGCTCTCTACTCTGAAACCCGTCGTGGGTTGTCTTCCTTCCAGCTCCG
rJMSF023E17+          GCCGATCAATGTTGCTCTCTACTCTGAAACCCGTCGTGGGTTGTCTTCCTTCCAGCTCCG
                      ____________________________________________________________
consensus             GCCGATCAATGTTGCTCTCTACTCTGAAACCCGTCGTGGGTTGTCTTCCTTCCAGCTCCG
 
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JMFF015M20-           CCCCACATGGTTCCCGTGAAAATGCGCCGCCGGCTACAATGCTGAGGGTGAATCCCAAAA
JMSF023E17-           CCCCACATGGTTCCCGTGAAAATGCGCCGCCGGCTACAATGCTGAGGGTGAATCCCAAAA
rJMSF023E17+          CCCCACATGGTTCCCGTGAAAATGCGCCGCCGGCTACAATGCTGAGGGTGAATCCCAAAA
                      ____________________________________________________________
consensus             CCCCACATGGTTCCCGTGAAAATGCGCCGCCGGCTACAATGCTGAGGGTGAATCCCAAAA
 
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JMFF015M20-           TTTCTTCTTCGTCTTCACATGCTCTCCAGGCACAGGAAACTCGGGCTGCTGTTTCAAGAA
JMSF023E17-           TTTCTTCTTCGTCTTCACATGCTCTCCAGGCACAGGAAACTCGGGCTGCTGTTTCAAGAA
rJMSF023E17+          TTTCTTCTTCGTCTTCACATGCTCTCCAGGCACAGGAAACTCGGGCTGCTGTTTCAAGAA
rJMFF015M20+                     TCTTCACATGCTCTCCAGGCACAGGAAACTCGGGCTGCTGTTTCAAGAA
                      ____________________________________________________________
consensus             TTTCTTCTTCGTCTTCACATGCTCTCCAGGCACAGGAAACTCGGGCTGCTGTTTCAAGAA
 
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JMFF015M20-           GAGATGTTATGATGGGCATAGCAGCCGCGGGGCTCGGGATTTCCTTGGCTAAGCCTGCTG
JMSF023E17-           GAGATGTTATGATGGGCATAGCAGCCGCGGGGCTCGGGATTTCCTTGGCTAAGCCTGCTG
rJMSF023E17+          GAGATGTTATGATGGGCATAGCAGCCGCGGGGCTCGGGATTTCCTTGGCTAAGCCTGCTG
rJMFF015M20+          GAGATGTTATGATGGGCATAGCAGCCGCGGGGCTCGGGATTTCCTTGGCTAAGCCTGCTG
                      ____________________________________________________________
consensus             GAGATGTTATGATGGGCATAGCAGCCGCGGGGCTCGGGATTTCCTTGGCTAAGCCTGCTG
 
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JMFF015M20-           AGGCCGTCGAGGTAGCTAATTCCGGGAACCCAATCTCGCAGTTTCTTGATCTGCTCAAGG
JMSF023E17-           AGGCCGTCGAGGTAGCTAATTCCGGGAACCCAATCTCGCAGTTTCTTGATCTGCTCAAGG
rJMSF023E17+          AGGCCGTCGAGGTAGCTAATTCCGGGAACCCAATCTCGCAGTTTCTTGATCTGCTCAAGG
rJMFF015M20+          AGGCCGTCGAGGTAGCTAATTCCGGGAACCCAATCTCGCAGTTTCTTGATCTGCTCAAGG
                      ____________________________________________________________
consensus             AGGCCGTCGAGGTAGCTAATTCCGGGAACCCAATCTCGCAGTTTCTTGATCTGCTCAAGG
 
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JMFF015M20-           ACTTGGTAGGGACCCCGAAGCCAAAACCAGAAGGCGATGAACCAAAAACCGAGAGTAAGG
JMSF023E17-           ACTTGGTAGGGACCCCGAAGCCAAAACCAGAAGGCGATGAACCAAAAACCGAGAGTAAGG
rJMSF023E17+          ACTTGGTAGGGACCCCGAAGCCAAAACCAGAAGGCGATGAACCAAAAACCGAGAGTAAGG
rJMFF015M20+          ACTTGGTAGGGACCCNGAAGCCAAAACCAGAAGGCGATGAACCAAAAACCGAGAGTAAGG
                      ____________________________________________________________
consensus             ACTTGGTAGGGACCCCGAAGCCAAAACCAGAAGGCGATGAACCAAAAACCGAGAGTAAGG
 
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JMFF015M20-           CCGAGTTACCAAAGCCAAAAACTGTAGGGGATGAAAAGCCGCCGCCTGTTGATAACAAGG
JMSF023E17-           CCGAGTTACCAAAGCCAAAAACTGTAGGGGATGAAAAGCCGCCGCCTGTTGATAACAAGG
rJMSF023E17+          CCGAGTTACCAAAGCCAAAAACTGTAGGGGATGAAAAGCCGCCGCCTGTTGATAACAAGG
rJMFF015M20+          CCGAGTTACCAAAGCCAAAAACTGTAGGGGATGAAAAGCCGCCGCCTGTTGATAACAAGG
                      ____________________________________________________________
consensus             CCGAGTTACCAAAGCCAAAAACTGTAGGGGATGAAAAGCCGCCGCCTGTTGATAACAAGG
 
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JMFF015M20-           CCGAGCCATCGAATCCGAAAACCGGAGGCGATGAGCAGAAGCAGCCCACAGCGAGCGTTG
JMSF023E17-           CCGAGCCATCGAATCCGAAAACCGGAGGCGATGAGCAGAAGCAGCCCACAGCGAGCGTTG
rJMSF023E17+          CCGAGCCATCGAATCCGAAAACCGGAGGCGATGAGCAGAAGCAGCCCACAGCGAGCGTTG
rJMFF015M20+          CCGAGCCATCGAATCCGAAAACCGGAGGCGATGAGCAGAAGCAGCCCACAGCGAGCGTTG
                      ____________________________________________________________
consensus             CCGAGCCATCGAATCCGAAAACCGGAGGCGATGAGCAGAAGCAGCCCACAGCGAGCGTTG
 
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JMFF015M20-           AGGCCAAATCGTCGG                                             
JMSF023E17-           AGGCCAAATCGTCGGAGCCAAAAACCGGAGGTGAAGTGAAAGATGAGACTAAAGCAATTG
rJMSF023E17+          AGGCCAAATCGTCGGAGCCAAAAACCGGAGGTGAAGTGAAAGATGAGACTAAAGCAATTG
rJMFF015M20+          AGGCCAAATCGTCGGAGCCAAAAACCGGAGGTGAAGTGAAAGATGAGACTAAAGCAATTG
                      ____________________________________________________________
consensus             AGGCCAAATCGTCGGAGCCAAAAACCGGAGGTGAAGTGAAAGATGAGACTAAAGCAATTG
 
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JMSF023E17-           CCAAAAACTGAGAATGGCTGTTCCTCAGTTTTTTTCTGTCATGAA               
rJMSF023E17+          CCAAAAACTGAGAATGGCTGTTCCTCAGTTTTTTTCTGTCATGAAGGTTAATATTTGCCA
rJMFF015M20+          CCAAAAACTGAGAATGGCTGTTCCTCAGTTTTTTTCTGTCATGAAGGTTAATATTTGCCA
                      ____________________________________________________________
consensus             CCAAAAACTGAGAATGGCTGTTCCTCAGTTTTTTTCTGTCATGAAGGTTAATATTTGCCA
 
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rJMSF023E17+          TCTTTATTGTGTTTTATTATTACATTCAACTCTGAACTCTCAAGAAATGCTGGTGAAGTT
rJMFF015M20+          TCTTTATTGTGTTTTATTATTACATTCAACTCTGAACTCTCAAGAAATGCTGGTGAAGTT
                      ____________________________________________________________
consensus             TCTTTATTGTGTTTTATTATTACATTCAACTCTGAACTCTCAAGAAATGCTGGTGAAGTT
 
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rJMSF023E17+          TTTATGACATTGAACT                                            
rJMFF015M20+          TTTATGACATTGAACTCTAAACCCTCTGTTAGTAGAATAGATGAAGTTTCATTCCACCAA
                      ____________________________________________________________
consensus             TTTATGACATTGAACTCTAAACCCTCTGTTAGTAGAATAGATGAAGTTTCATTCCACCAA
 
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rJMFF015M20+          TTAGCAGTTTAAGTGAAGTTTTAAGACATTCAACTCTGAACTCCTAATTAGTAAAAGAGT
                      ____________________________________________________________
consensus             TTAGCAGTTTAAGTGAAGTTTTAAGACATTCAACTCTGAACTCCTAATTAGTAAAAGAGT