| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011N02 | Sequence | 524 | 008177 (6) | ref|XP_004238823.1| | 5e-20 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum lycopersicum] | 714 | 008177 (6) | ref|XP_004238823.1| | 7e-31 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum lycopersicum] |
| JMFF018I06 | Sequence | 528 | 008177 (6) | ref|XP_006355109.1| | 3e-31 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum] | 696 | 008177 (6) | ref|XP_006355109.1| | 8e-32 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum] |
| JMFN002C05 | Sequence | 520 | 008177 (6) | gb|KJB80208.1| | 3e-22 | hypothetical protein B456_013G086200 [Gossypium raimondii] | |||||
| JMFN038E05 | Sequence | 596 | 008177 (6) | ref|XP_006355109.1| | 3e-32 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN002C05+ AGCTCTTTGATAGCAATATGAAAA
____________________________________________________________
consensus AGCTCTTTGATAGCAATATGAAAA
. : . : . : . : . : . :
JMFN002C05+ GATAAATTTTGAATGTTCAGGATTAAAACTCATAGAAGGTACAATTTTTTGTCTATATTC
rJMFF018I06- TTAAAACTCATAGAAGGTACAATTTTTTGTCTCTATTC
rJMFF011N02- ATTTTGAATGTTCAGGATTAAAACTCATAGAAGGTACAATTTTTTGTCTCTATTC
____________________________________________________________
consensus GATAAATTTTGAATGTTCAGGATTAAAACTCATAGAAGGTACAATTTTTTGTCTCTATTC
. : . : . : . : . : . :
JMFN002C05+ ACACGTAATTTTCAGTTCTTTCCAAAAACCCAGAATAAATTCTTAAGAACTCGTTTCTAA
rJMFF018I06- ACACGTAATTTTCAGTTCTTTCCAAAAACCCAGAATAAATTCTTAAGAACTCGTTTCTAA
rJMFF011N02- ACACGTAATTTTCAGTTCTTTCCAAAAACCCAGAATAAATTCTTAAGAACTCGTTTCTAA
____________________________________________________________
consensus ACACGTAATTTTCAGTTCTTTCCAAAAACCCAGAATAAATTCTTAAGAACTCGTTTCTAA
. : . : . : . : . : . :
JMFN002C05+ GCTTCAGCTTCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
JMFN038E05+ TCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
rJMFF018I06- GCTTCAGCTTCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
rJMFF011N02- GCTTCAGCTTCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
____________________________________________________________
consensus GCTTCAGCTTCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
. : . : . : . : . : . :
JMFN002C05+ CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
JMFN038E05+ CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
rJMFF018I06- CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
JMFF018I06+ TCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
JMFF011N02+ TTCACNTTATNTTNTTCAGGCATTTTATGTNTACAAACAGGG
rJMFF011N02- CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
____________________________________________________________
consensus CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
. : . : . : . : . : . :
JMFN002C05+ CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
JMFN038E05+ CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
rJMFF018I06- CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
JMFF018I06+ CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
JMFF011N02+ CAAGACCCATGAATCCCTAACCACTTCTNTATACACTCCTTGTGAAATNTATGCCGGCAC
rJMFF011N02- CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
____________________________________________________________
consensus CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
. : . : . : . : . : . :
JMFN002C05+ GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
JMFN038E05+ GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
rJMFF018I06- GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
JMFF018I06+ GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
JMFF011N02+ GGCATCTCCTTCACCGTCTCACCAACCCCCCAACTCCTCCAAGCAAATCGCACACTCACC
rJMFF011N02- GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
____________________________________________________________
consensus GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
. : . : . : . : . : . :
JMFN002C05+ TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
JMFN038E05+ TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
rJMFF018I06- TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
JMFF018I06+ TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
JMFF011N02+ TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
rJMFF011N02- TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
____________________________________________________________
consensus TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
. : . : . : . : . : . :
JMFN002C05+ AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
JMFN038E05+ AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
rJMFF018I06- AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
JMFF018I06+ AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
JMFF011N02+ AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
rJMFF011N02- AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
____________________________________________________________
consensus AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
. : . : . : . : . : . :
JMFN002C05+ AGACGATCTATCACTGC
JMFN038E05+ AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
rJMFF018I06- AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
JMFF018I06+ AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
JMFF011N02+ AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
rJMFF011N02- AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
____________________________________________________________
consensus AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
. : . : . : . : . : . :
JMFN038E05+ TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
rJMFF018I06- TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
JMFF018I06+ TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
JMFF011N02+ TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
rJMFF011N02- TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
____________________________________________________________
consensus TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
. : . : . : . : . : . :
JMFN038E05+ ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
rJMFF018I06- ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
JMFF018I06+ ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
JMFF011N02+ ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
rJMFF011N02- ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACAGGGGGACTCTGTTT
____________________________________________________________
consensus ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
. : . : . : . : . : . :
JMFN038E05+ CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAA
rJMFF018I06- CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT
JMFF018I06+ CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT
JMFF011N02+ CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT
rJMFF011N02- CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT
____________________________________________________________
consensus CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT