Contig 008176:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011G05Sequence506007772 (12)gb|EPS63809.1|5e-05hypothetical protein M569_10976 [Genlisea aurea]589008176 (4)
JMFF011K05Sequence570008176 (4)700008176 (4)
JMSF009A12Sequence222024101gb|ABY56086.1|2e-08putative heterogeneous nuclear ribonucleoprotein [Cucumis melo]727008176 (4)ref|XP_009763753.1|1e-04PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana sylvestris

Alignment

This contig is upended


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JMFF011K05-                                                       GAAATCCTAATGCTCC
                      ____________________________________________________________
consensus                                                         GAAATCCTAATGCTCC
 
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JMFF011K05-           CAATAGTGGTGGCTATGGAAGTGGCCCAAGAAGCTCGTGGAGCTCTCAGAGTCCCTCTGG
rJMSF009A12+                                            TCGTGGAGCTCTCAGAGTCCCTCTGG
                      ____________________________________________________________
consensus             CAATAGTGGTGGCTATGGAAGTGGCCCAAGAAGCTCGTGGAGCTCTCAGAGTCCCTCTGG
 
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JMFF011K05-           GTATGGGAATGTCGGCTATGGAAGTGCCCCCTGGGGTAATTCCAATGCCGCTTCTGGTGG
rJMSF009A12+          GTATGGGAATGTCGGCTATGGAAGTGCCCCCTGGGGTAATTCCAATGCCGCTTCTGGTGG
                      ____________________________________________________________
consensus             GTATGGGAATGTCGGCTATGGAAGTGCCCCCTGGGGTAATTCCAATGCCGCTTCTGGTGG
 
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JMFF011K05-           CGGAGCTGCTGCGGGGGGTCAATCACTGACGGGAGTGGCGGGATATGGCAACCAAGGCTA
rJMSF009A12+          CGGAGCTGCTGCGGGGGGTCAATCACTGACGGGAGTGGCGGGATATGGCAACCAAGGCTA
rJMFF011K05+                            TCAATCACTGACGGGAGTGGCGGGATATGGCAACCAAGGCTA
                      ____________________________________________________________
consensus             CGGAGCTGCTGCGGGGGGTCAATCACTGACGGGAGTGGCGGGATATGGCAACCAAGGCTA
 
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JMFF011K05-           TGGTTATAGTGGGTTTGGTGGAAATGACGGGGCTTATGGAAATTCGTCTGCTTATGGGTC
rJMSF009A12+          TGGTTATAGTGGGTTTGGTGGAAATGACGGGGCTTATGGAAATTCGTCTGCTTATGGGTC
rJMFF011G05+                                                             TTATGGGTC
rJMFF011K05+          TGGTTATAGTGGGTTTGGTGGAAATGACGGGGCTTATGGAAATTCGTCTGCTTATGGGTC
                      ____________________________________________________________
consensus             TGGTTATAGTGGGTTTGGTGGAAATGACGGGGCTTATGGAAATTCGTCTGCTTATGGGTC
 
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JMFF011K05-           TATCGGACGTGTTGGTGGTGCTCCAATAACAAGTTCACCGATTGGCGGTGGTGGTGCTAC
rJMSF009A12+          TATCGGACGTGTTGGTGGTGCTCCAAGAACAAGTTCACCGATTGGCGGTGGTGGTGCTAC
rJMFF011G05+          TATCGGACGTGTTGGTGGTGCTCCAATACCAAGTTCACCGATTGGCGGTGGTGGTGCTAC
rJMFF011K05+          TATCGGACGTGTTGGTGGTGCTCCAATAACAAGTTCACCGATTGGCGGTGGTGGTGCTAC
                      ____________________________________________________________
consensus             TATCGGACGTGTTGGTGGTGCTCCAATAACAAGTTCACCGATTGGCGGTGGTGGTGCTAC
 
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JMFF011K05-           AGGAGAGTTACAATATGGCAATGCGGGTGGAAATTCTGGATATGGAAGTGCAGGCTGGAG
rJMSF009A12+          AGGAGAGTTACAATATGGCAATGCGGGTGGAAATTCTGGATATGGAAGTGCAGGCTGGAG
rJMFF011G05+          AGGAGAGTTACAATATGGCAATGCGGGTGGAAATTCTGGATATGGAAGTGCAGGCTGGAG
rJMFF011K05+          AGGAGAGTTACAATATGGCAATGCGGGTGGAAATTCTGGATATGGAAGTGCAGGCTGGAG
                      ____________________________________________________________
consensus             AGGAGAGTTACAATATGGCAATGCGGGTGGAAATTCTGGATATGGAAGTGCAGGCTGGAG
 
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JMFF011K05-           ACCCGATATACCACAAGCTTCTGGCAATTATGGCT-CGAATGGATCCCATGGCGGCCAGG
rJMSF009A12+          ACCCGATATACCACAAGCTTCTGGCAATTATGGCT-CGAATGGATCCCATGGCGGCCAGG
rJMFF011G05+          ACCCGATATACCACAAGCTTCTGGCAATTATGGCTCCGAATGGATCCCATGGCGGCCAGG
rJMFF011K05+          ACCCGATATACCACAAGCTTCTGGCAATTATGGCT-CGAATGGATCCCATGGCGGCCAGG
                      ____________________________________________________________
consensus             ACCCGATATACCACAAGCTTCTGGCAATTATGGCT-CGAATGGATCCCATGGCGGCCAGG
 
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JMFF011K05-           TTGGGTATGGAAGCGGCTATAGTGGTATCCCAGGGCGGCAATCTCAACAGCAGTAATCGC
rJMSF009A12+          TTGGGTATGGAAGCGGCTATAGTGGTATCCCAGGGCGGCAATCTCAACAGCAGTAATCGC
rJMFF011G05+          TTGGGTATGGAAGCGGCTATAGTGGTATCCCAGGGCGGCAATCTCAACAGCAGTAATCGC
rJMFF011K05+          TTGGGTATGGAAGCGGCTATAGTGGTATCCCAGGGCGGCAATCTCAATAGCAGTAATCGC
                      ____________________________________________________________
consensus             TTGGGTATGGAAGCGGCTATAGTGGTATCCCAGGGCGGCAATCTCAACAGCAGTAATCGC
 
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JMFF011K05-           AATGTGCGACTCATTCTCGTCTTTGGAGTCTCTTCCCAGTTCCCGCCACTGATTTTGCAG
rJMSF009A12+          AATGTGCGACTCATTCTCGTCTTTGGAGTCTCTTCCCAGTTCCCGCCACTGATTTTGCAG
rJMFF011G05+          AATGTGCGACTCATTCTCGTCTTCGGAGTCTCTTCCCAGTTCCCGCCACTGATTTTGCAG
rJMFF011K05+          AATGTGCGACTCATTCTCGTCTTTGGAGTCTCTTCCCAGTTCCCGCCACTGATTTTGCAG
                      ____________________________________________________________
consensus             AATGTGCGACTCATTCTCGTCTTTGGAGTCTCTTCCCAGTTCCCGCCACTGATTTTGCAG
 
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JMFF011K05-           TTTCACGTGCTGGGA                                             
rJMSF009A12+          TTTCACGTGCTGGGAGGATGAGGTTTTCAACGCATC-ATATATACCTGCTAAACGGGACT
rJMFF011G05+          TTTCACGTGCTGGGAGGATGAGGTTTTCAACGCATC-ATATATACCTGCTAAACGGGACT
rJMFF011K05+          TTTCACGTGCTGGGAGGATGAGGTTTTCAACGCATCGNTATATACCTGCTAAACGGGACT
                      ____________________________________________________________
consensus             TTTCACGTGCTGGGAGGATGAGGTTTTCAACGCATC-ATATATACCTGCTAAACGGGACT
 
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rJMSF009A12+          GGTTGGATTGCTTGAATCTATAGTTTTCAGTACTTGTTTGCTAGTC-TAAGTAAAACTAG
rJMFF011G05+          GGTTGGATTGCTTGAATCTATAGTTTTCAGTACTTGTTTGCTAGTCATAAGTAAAACTAG
rJMFF011K05+          GGTTGGATTGCTTGAATCTATAGTTTTCAGTACTTGTTTGCTAGTC-TAAGTAAAACTAG
                      ____________________________________________________________
consensus             GGTTGGATTGCTTGAATCTATAGTTTTCAGTACTTGTTTGCTAGTC-TAAGTAAAACTAG
 
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rJMSF009A12+          TTTCATCGAGGAAAAGTTTTCGTTTTGCTGCTCTTTATAATATTTGCAGGATTAGTTTCA
rJMFF011G05+          TTTCATCGAGGAAAAGTTNTCGTTNTGCTGCTCNTTATAATATTTGCAGGATNAGTNTCA
rJMFF011K05+          TTTCATCGAGGAAAAGTTTTCGTTTTGCTGCTCTTTATAATATTTGCAGGATTAGTTTCA
                      ____________________________________________________________
consensus             TTTCATCGAGGAAAAGTTTTCGTTTTGCTGCTCTTTATAATATTTGCAGGATTAGTTTCA
 
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rJMSF009A12+          CTTTATTGTGCTTATAGCTATTTTACTAGATGAGCTTGTTGCAT                
rJMFF011G05+          CTTTATTGTGCTTATAGCTATNTTACTAGATGAGCTTGTTGCATTGTTTCTCATTGTCTG
rJMFF011K05+          CTTTATTGTGCTTATAGCTATTTTACTAGATGAGCTTGTTGCATTGTTTCTCATTGTCTG
                      ____________________________________________________________
consensus             CTTTATTGTGCTTATAGCTATTTTACTAGATGAGCTTGTTGCATTGTTTCTCATTGTCTG
 
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rJMFF011G05+          CGAGATATATGAGTCTACTCTANGTCGAACCTCTATCTGC                    
rJMFF011K05+          CGAGATATATGAGTCTACTTTATGTCGAACTTCTATCTGCTTGATTCTGATGAGTCTTTT
                      ____________________________________________________________
consensus             CGAGATATATGAGTCTACTTTATGTCGAACTTCTATCTGCTTGATTCTGATGAGTCTTTT