Contig 008174:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011A21Sequence570008174 (8)ref|XP_009795107.1|4e-103PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana sylvestri637008174 (8)ref|XP_009795107.1|1e-58PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana sylvestri
JMFF019J14Sequence576008174 (8)ref|XP_009795107.1|4e-103PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana sylvestri748008174 (8)ref|XP_009795107.1|1e-101PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana sylvestri
JMFF040D10Sequence559008174 (8)ref|XP_009795107.1|2e-103PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana sylvestri661008174 (8)ref|XP_009795107.1|2e-73PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana sylvestri
JMFF049B20Sequence616008174 (8)ref|XP_009795107.1|5e-103PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana sylvestri583008174 (8)ref|XP_009795107.1|3e-53PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana sylvestri

Alignment

This contig is upended


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JMFF040D10-                                            GACATGTTGTAGAGAGAAAGCTATCGG
JMFF049B20-                                            GACATGTTGTAGAGAGAAAGCTATCGG
                      ____________________________________________________________
consensus                                              GACATGTTGTAGAGAGAAAGCTATCGG
 
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JMFF040D10-           CCATGTCTGACGAGCACCATTTCGAGTCGAAGGCAGATGCAGGGGCATCCAAGACCTTCC
JMFF049B20-           CCATGTCTGACGAGCACCATTTCGAGTCGAAGGCAGATGCAGGGGCATCCAAGACCTTCC
JMFF019J14-                      GAGCACCATTTCGAGTCGAAGGCAGATGCAGGGGCATCCAAGACCTTCC
JMFF011A21-                      GAGCACCATTTCGAGTCGAAGGCAGATGCAGGGGCATCCAAGACCTTCC
rJMFF019J14+                CTGACGAGCACCATTTCGAGTCGAAGGCAGATGCAGGGGCATCCAAGACCTTCC
                      ____________________________________________________________
consensus             CCATGTCTGACGAGCACCATTTCGAGTCGAAGGCAGATGCAGGGGCATCCAAGACCTTCC
 
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JMFF040D10-           CGCAGCAAGCTGGTACCATCCGAAAGAATGGCTACCTAGTCATCAAATCTCGCCCTTGCA
JMFF049B20-           CGCAGCAAGCTGGTACCATCCGAAAGAATGGCTACCTAGTCATCAAATCTCGCCCTTGCA
rJMFF040D10+                              CGAAAGAATGGCTACCTAGTCATCAAATCTCGCCCTNGCA
JMFF019J14-           CGCAGCAAGCTGGTACCATCCGAAAGAATGGCTACCTAGTCATCAAATCTCGCCCTTGCA
JMFF011A21-           CGCAGCAAGCTGGTACCATCCGAAAGAATGGCTACCTAGTCATCAAATCTCGCCCTTGCA
rJMFF019J14+          CGCAGCAAGCTGGTACCATCCGAAAGAATGGCTACCTAGTCATCAAATCTCGCCCTTGCA
                      ____________________________________________________________
consensus             CGCAGCAAGCTGGTACCATCCGAAAGAATGGCTACCTAGTCATCAAATCTCGCCCTTGCA
 
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JMFF040D10-           AGGTTGTTGAGGTCTCCACTTCAAAAACCGGCAAGCATGGGCATGCTAAGTGTCACTTTG
JMFF049B20-           AGGTTGTTGAGGTCTCCACTTCAAAAACCGGCAAGCATGGGCATGCTAAGTGTCACTTTG
rJMFF040D10+          AGGTTGTTGAGGTCTCCACNTCAAAAACCGGCAAGCATGGGCATGCTAAGTGTCACNTTG
JMFF019J14-           AGGTTGTTGAGGTCTCCACTTCAAAAACCGGCAAGCATGGGCATGCTAAGTGTCACTTTG
JMFF011A21-           AGGTTGTTGAGGTCTCCACTTCAAAAACCGGCAAGCATGGGCATGCTAAGTGTCACTTTG
rJMFF019J14+          AGGTTGTTGAGGTCTCCACTTCAAAAACCGGCAAGCATGGGCATGCTAAGTGTCACTTTG
rJMFF011A21+                                AAAAACCGGCAAGCATGGGCATGCTAAGTGTCACTNTG
                      ____________________________________________________________
consensus             AGGTTGTTGAGGTCTCCACTTCAAAAACCGGCAAGCATGGGCATGCTAAGTGTCACTTTG
 
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JMFF040D10-           TGGCAATTGATATTTTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAATT
JMFF049B20-           TGGCAATTGATATTTTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAATT
rJMFF040D10+          TGGCAANTGATATTTTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAATT
JMFF019J14-           TGGCAATTGATATTTTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAATT
JMFF011A21-           TGGCAATTGATATTTTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAATT
rJMFF019J14+          TGGCAATTGATATTTTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAATT
rJMFF049B20+                       TTTCAATGGGAAGAAACTGNAAGATATTGTTCCTTCTTCTCACAATT
rJMFF011A21+          TGGCAATNGATATTTTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTNTCACAATT
                      ____________________________________________________________
consensus             TGGCAATTGATATTTTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAATT
 
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JMFF040D10-           GTGATGTTCCTCATGTTAATCGCACCGACTACCAGCTGATTGACATCTCTGAAGATGGTT
JMFF049B20-           GTGATGTTCCTCATGTTAATCGCACCGACTACCAGCTGATTGACATCTCTGAAGATGGTT
rJMFF040D10+          GTGATGTTCCTCATGTTAATCGCNCCGACTACCAGCTGATTGACATCTNTGAAGATGGTT
JMFF019J14-           GTGATGTTCCTCATGTTAATCGCACCGACTACCAGCTGATTGACATCTCGGAAGATGGTT
JMFF011A21-           GTGATGTTCCTCATGTTAATCGCACCGACTACCAGCTGATTGACATCTCGGAAGATGGTT
rJMFF019J14+          GTGATGTTCCTCATGTTAATCGCACCGACTACCAGCTGATTGACATCTCGGAAGATGGTT
rJMFF049B20+          GTGATGTTCCTCATGTTAATCGCACCGACTACCAGCTGATTGACATCTCTGAAGATGGTT
rJMFF011A21+          GTGATGTTCCTCATGTTAATCGCNCCGACTACCAGCTGATTGACATCTCGGAAGATGGTT
                      ____________________________________________________________
consensus             GTGATGTTCCTCATGTTAATCGCACCGACTACCAGCTGATTGACATCTCTGAAGATGGTT
 
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JMFF040D10-           TTGTGTCTCTTCTTACCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCACCGATG
JMFF049B20-           TTGTGTCTCTTCTTACCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCACCGATG
rJMFF040D10+          TTGTGTCTNTTCTTACCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCNCCGATG
JMFF019J14-           TTGTGTCTCTTCTTACCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCACCGATG
JMFF011A21-           TTGTGTCTCTTCTTACCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCACCGATG
rJMFF019J14+          TTGTGTCTCTTCTTACCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCACCGATG
rJMFF049B20+          TTGTGTCTCTTCTTACCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCACCGATG
rJMFF011A21+          TNGTGTCTCTTNTTNCCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCNCCGATG
                      ____________________________________________________________
consensus             TTGTGTCTCTTCTTACCGAAAACGGGAACACCAAAGATGACTTGAGGCTTCCCACCGATG
 
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JMFF040D10-           AAGCTCTGCTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
JMFF049B20-           AAGCTCTGCTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
rJMFF040D10+          AAGCTNTGCTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
JMFF019J14-           AAGCTCTGCTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
JMFF011A21-           AAGCTCTGCTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
rJMFF019J14+          AAGCTCTGCTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
rJMFF049B20+          AAGCTCTGCTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
rJMFF011A21+          AAGCTNTGNTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
                      ____________________________________________________________
consensus             AAGCTCTGCTTGGCCAGATTAAAGGTGGATTTGATGAAGGAAAGGATCTTATTTTGACTG
 
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JMFF040D10-           TTATGTCTGCAATGGGAGAAGAGCAGATTTGTACGGTGAAAGACATTGGTAAAACTAATT
JMFF049B20-           TTATGTCTGCAATGGGAGAAGAGCAGATTTGTACGGTGAAAGACATTGGTAAAACTAATT
rJMFF040D10+          TTATGTCTGCAANGGGAGAAGAGCAGATTTGTACGGTGAAAGACATNGGTAAAACTAATT
JMFF019J14-           TTATGTCTGCAATGGGAGAAGAGCAGATTTGTACGGTGAAAGACATTGGTAAAACTAATT
JMFF011A21-           TTATGTCTGCAATGGGAGAAGAGCAGATTTGTACGGTGAAAGACATTGGTAAAACTAATT
rJMFF019J14+          TTATGTCTGCAATGGGAGAAGAGCAGATTTGTACGGTGAAAGACATTGGTAAAACTAATT
rJMFF049B20+          TTATGTCTGCAATGGGAGAAGAGCAGATTTGTACGGTGAAAGACATTGGTAAAACTAATT
rJMFF011A21+          TTATGTCTGCAATGGGAGAAGAGCAGATTTGTACGGTGAAAGACATTGGTAAAACTAATT
                      ____________________________________________________________
consensus             TTATGTCTGCAATGGGAGAAGAGCAGATTTGTACGGTGAAAGACATTGGTAAAACTAATT
 
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JMFF040D10-           AAGTCGCATGATTTCCAACCCTATCGAAAGCATATCTCTCAAGCGAACCGTT        
JMFF049B20-           AAGTCGCATGATTTCCAACCCTATCGAAAGCATATCTCTCAAGCGAACCGTTCTCAGAAG
rJMFF040D10+          AAGTCGCATGATTTCCAACCCTATNGAAAGCATATCTNTCAAGCGAACCGTTCTCAGAAG
JMFF019J14-           AAGTCGCATGATTTCCAACCCTATCGAAAGCATATCTCTCAAGCGAAC            
JMFF011A21-           AAGTCGCATGATTTCCAACCCTATCNAAAGCATATCTCTCAAGC                
rJMFF019J14+          AAGTCGCATGATTTCCAACCCTATCGAAAGCATATCTCTCAAGCGAACCGTTCTCAGAAG
rJMFF049B20+          AAGTCGCATGATTTCCAACCCTATCGAAAGCATATCTCTCAAGCGAACCGTTCTCAGAAG
rJMFF011A21+          AAGTCGCATGATTTCCAACCCTATCGAAAGCATATCTCTCAAGCGAACCGTTCTCAGAAG
                      ____________________________________________________________
consensus             AAGTCGCATGATTTCCAACCCTATCGAAAGCATATCTCTCAAGCGAACCGTTCTCAGAAG
 
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JMFF049B20-           AAAGTTTAGCTTCATATCTCTTAAGCGAACCGTTCCCCTAAGAAAGTTT           
rJMFF040D10+          AAAGTTTAGCTTCATATCTNTTAAGCGAACCGTTCCCTAAAGAAAGTTTAGCGAGACAGN
rJMFF019J14+          AAAGTTTAGCTTCATATCTCTTAAGCGAACCGTTCCCTAAAGAAAGTTTAGCGAGACAGT
rJMFF049B20+          AAAGTTTAGCTTCATATCTCTTAAGCGAACCGTTCCCTAAAGAAAGTTTAGCGAGACAGT
rJMFF011A21+          AAAGTTTAGCTTCATATCTCTTAAGCGAACCGTTCCCTAAAGAAAGTTTAGCGAGACAGT
                      ____________________________________________________________
consensus             AAAGTTTAGCTTCATATCTCTTAAGCGAACCGTTCCCTAAAGAAAGTTTAGCGAGACAGT
 
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rJMFF040D10+          GAGCTTGAGATTTGCAGCAGCAGGGATGGAGATTTTACTCTTTTTGGTTATGTTTTATTT
rJMFF019J14+          GAGCTTGAGATTTGCAGCAGCAGGGATGGAGATTTTACTCTTTTTGGTTATGTTTTATTT
rJMFF049B20+          GAGCTTGAGATTTGCAGCAGCAGGGATGGAGATTTTACTCTTTTTGGTTATGTTTTATTT
rJMFF011A21+          GAGCTTGAGATTTGCAGCAGCAGGGATGGAGATTTTACTCTTTTTGGTTATGTTTTATTT
                      ____________________________________________________________
consensus             GAGCTTGAGATTTGCAGCAGCAGGGATGGAGATTTTACTCTTTTTGGTTATGTTTTATTT
 
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rJMFF040D10+          CTGTGCTCAACTGTTGCAANTTTTTTTTGGTGAGGAAAGAGAGGNTGAGCCTCAACTATC
rJMFF019J14+          CTGTGCTCAACTGTTGCAA-TTTTTTTTGGTGAGGAAAGAGAGGTTGAGCCTCAACTATC
rJMFF049B20+          CTGTGCTCAACTGTTGCAATTTTTTTTTGGTGAGGAAAGAGAGGTTGAGCCTCAACTATC
rJMFF011A21+          CTGTGCTCAACTGTTGCAA-TTTTTTTTGGTGAGGAAAGAGAGGTTGAGCCTCAACTATC
                      ____________________________________________________________
consensus             CTGTGCTCAACTGTTGCAATTTTTTTTTGGTGAGGAAAGAGAGGTTGAGCCTCAACTATC
 
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rJMFF040D10+          TAACTCNGCAGCNAAATTCAA                                       
rJMFF019J14+          TAACTCTGCAGTTAAATTCAATCTTATGTGCA                            
rJMFF049B20+          TAACTCTGCAGTTAAATTCAATCTTATGTGCATGATTCCTTCCTTCCCTTATGAAG    
rJMFF011A21+          TAACTCTGCAGTNAAATTCAATCTTATGTGCATGATTCCTTCCTTCCCTTATGAAGAAAA
                      ____________________________________________________________
consensus             TAACTCTGCAGTTAAATTCAATCTTATGTGCATGATTCCTTCCTTCCCTTATGAAGAAAA