Contig 008172:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010O09Sequence579000056 (3)ref|XP_010091922.1|4e-19Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h744008172 (4)ref|XP_009766050.1|4e-85PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]
JMFF012G11Sequence516000056 (3)ref|XP_010091922.1|8e-39Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h782008172 (4)ref|XP_009766050.1|1e-114PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]
JMFF046C08Sequence507000056 (3)ref|XP_010091922.1|1e-46Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h514008172 (4)ref|XP_009766050.1|6e-58PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]
JMFN009G24Sequence485008172 (4)ref|XP_009766050.1|2e-58PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF012G11+                    TGGCTAGAGATAAGCTGGAGAAATCCATGGTGGCTGACAATGATTCGGGA
                      ____________________________________________________________
consensus                       TGGCTAGAGATAAGCTGGAGAAATCCATGGTGGCTGACAATGATTCGGGA
 
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rJMFF012G11+          AAGAGCATCGAGAGTGAAGTTCGGACAAGTTCTGGCACCTTTCTTAGAAAGGCTCAGGAT
                      ____________________________________________________________
consensus             AAGAGCATCGAGAGTGAAGTTCGGACAAGTTCTGGCACCTTTCTTAGAAAGGCTCAGGAT
 
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rJMFF012G11+          CAAATTGTTGCTAATATTGAAGCCAGGATAGCTGCCTGGACTTTCTTACCTCCAGAGCTA
rJMFF010O09+                                                               AGAGCTA
                      ____________________________________________________________
consensus             CAAATTGTTGCTAATATTGAAGCCAGGATAGCTGCCTGGACTTTCTTACCTCCAGAGCTA
 
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rJMFF012G11+          GGGGGTCATCGTGTGGCTACTGTTCTTATGTACTTATCATCTGTTGAGAAGGGTGGGGAA
rJMFF010O09+          GGGGGTCATCGTGTGGCTACTGTTCTTATGTACTTATCATCTGTTGAGAAGGGTGGGGAA
                      ____________________________________________________________
consensus             GGGGGTCATCGTGTGGCTACTGTTCTTATGTACTTATCATCTGTTGAGAAGGGTGGGGAA
 
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rJMFF012G11+          ACCATATTCCCTAGTTCCGAGAACAAAGACATTCAGCCAAAGGGTGAGGACTGGTCCGAC
rJMFF046C08+                                                            CTGGTCCGAC
JMFN009G24-                                                             CTGGTCCGAC
rJMFF010O09+          ACCATATTCCNTAGTTCCGAGAACAAAGACATTCAGCCAAAGGGTGAGGACTGGTCCGAC
                      ____________________________________________________________
consensus             ACCATATTCCCTAGTTCCGAGAACAAAGACATTCAGCCAAAGGGTGAGGACTGGTCCGAC
 
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rJMFF012G11+          TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
rJMFF046C08+          TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
JMFN009G24-           TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
rJMFF010O09+          TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
                      ____________________________________________________________
consensus             TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
 
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rJMFF012G11+          CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
rJMFF046C08+          CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
JMFN009G24-           CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
rJMFF010O09+          CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
                      ____________________________________________________________
consensus             CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
 
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rJMFF012G11+          GGCGAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
rJMFF046C08+          GGCGAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
JMFN009G24-           GGCAAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
rJMFF010O09+          GGCGAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
                      ____________________________________________________________
consensus             GGCGAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
 
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rJMFF012G11+          GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
rJMFF046C08+          GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
JMFN009G24-           GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
rJMFF010O09+          GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
                      ____________________________________________________________
consensus             GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
 
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rJMFF012G11+          AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
rJMFF046C08+          AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
JMFN009G24-           AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
rJMFF010O09+          AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
                      ____________________________________________________________
consensus             AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
 
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rJMFF012G11+          GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
rJMFF046C08+          GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
JMFN009G24-           GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
rJMFF010O09+          GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
                      ____________________________________________________________
consensus             GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
 
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rJMFF012G11+          AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
rJMFF046C08+          AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
JMFN009G24-           AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
rJMFF010O09+          AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
                      ____________________________________________________________
consensus             AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
 
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rJMFF012G11+          TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGCAAATTAACTTG
rJMFF046C08+          TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGCAAATTAACTTG
JMFN009G24-           TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGC           
rJMFF010O09+          TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGCAAATTAACTTG
                      ____________________________________________________________
consensus             TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGCAAATTAACTTG
 
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rJMFF012G11+          CCTATTACAGAG                                                
rJMFF046C08+          CCTATTACAGAGTCATTTTTACAT                                    
rJMFF010O09+          CCTATTACAGAGTCATTTTTACATAGAAAATTTATCTTGGCAGGGTGGTATATATGATTT
                      ____________________________________________________________
consensus             CCTATTACAGAGTCATTTTTACATAGAAAATTTATCTTGGCAGGGTGGTATATATGATTT
 
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rJMFF010O09+          ACTGTTGAGATTTTTAACAGTTGTAAGAGACTGATACCTTAACCAAATAATTCACTCATT
                      ____________________________________________________________
consensus             ACTGTTGAGATTTTTAACAGTTGTAAGAGACTGATACCTTAACCAAATAATTCACTCATT