Contig 008172:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010O09Sequence579000056 (3)ref|XP_010091922.1|4e-19Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h744008172 (4)ref|XP_009766050.1|4e-85PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]
JMFF012G11Sequence516000056 (3)ref|XP_010091922.1|8e-39Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h782008172 (4)ref|XP_009766050.1|1e-114PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]
JMFF046C08Sequence507000056 (3)ref|XP_010091922.1|1e-46Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h514008172 (4)ref|XP_009766050.1|6e-58PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]
JMFN009G24Sequence485008172 (4)ref|XP_009766050.1|2e-58PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF012G11+ TGGCTAGAGATAAGCTGGAGAAATCCATGGTGGCTGACAATGATTCGGGA
                      ____________________________________________________________
consensus TGGCTAGAGATAAGCTGGAGAAATCCATGGTGGCTGACAATGATTCGGGA
 
. : . : . : . : . : . :
rJMFF012G11+ AAGAGCATCGAGAGTGAAGTTCGGACAAGTTCTGGCACCTTTCTTAGAAAGGCTCAGGAT
                      ____________________________________________________________
consensus AAGAGCATCGAGAGTGAAGTTCGGACAAGTTCTGGCACCTTTCTTAGAAAGGCTCAGGAT
 
. : . : . : . : . : . :
rJMFF012G11+ CAAATTGTTGCTAATATTGAAGCCAGGATAGCTGCCTGGACTTTCTTACCTCCAGAGCTA
rJMFF010O09+ AGAGCTA
                      ____________________________________________________________
consensus CAAATTGTTGCTAATATTGAAGCCAGGATAGCTGCCTGGACTTTCTTACCTCCAGAGCTA
 
. : . : . : . : . : . :
rJMFF012G11+ GGGGGTCATCGTGTGGCTACTGTTCTTATGTACTTATCATCTGTTGAGAAGGGTGGGGAA
rJMFF010O09+ GGGGGTCATCGTGTGGCTACTGTTCTTATGTACTTATCATCTGTTGAGAAGGGTGGGGAA
                      ____________________________________________________________
consensus GGGGGTCATCGTGTGGCTACTGTTCTTATGTACTTATCATCTGTTGAGAAGGGTGGGGAA
 
. : . : . : . : . : . :
rJMFF012G11+ ACCATATTCCCTAGTTCCGAGAACAAAGACATTCAGCCAAAGGGTGAGGACTGGTCCGAC
rJMFF046C08+ CTGGTCCGAC
JMFN009G24- CTGGTCCGAC
rJMFF010O09+ ACCATATTCCNTAGTTCCGAGAACAAAGACATTCAGCCAAAGGGTGAGGACTGGTCCGAC
                      ____________________________________________________________
consensus ACCATATTCCCTAGTTCCGAGAACAAAGACATTCAGCCAAAGGGTGAGGACTGGTCCGAC
 
. : . : . : . : . : . :
rJMFF012G11+ TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
rJMFF046C08+ TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
JMFN009G24- TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
rJMFF010O09+ TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
                      ____________________________________________________________
consensus TGTGCTAAAAATGGCTATGCAGTGAAACCTTACAAGGGTGATGCGTTGTTGTTTTTCAGT
 
. : . : . : . : . : . :
rJMFF012G11+ CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
rJMFF046C08+ CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
JMFN009G24- CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
rJMFF010O09+ CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
                      ____________________________________________________________
consensus CTTCATCTCAACGCTACGACTGACCCTCTGAGCTTACATGGAAGCTGCCCTGTGCTTGAA
 
. : . : . : . : . : . :
rJMFF012G11+ GGCGAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
rJMFF046C08+ GGCGAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
JMFN009G24- GGCAAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
rJMFF010O09+ GGCGAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
                      ____________________________________________________________
consensus GGCGAGAAGTGGTCGGCTACAAAATGGATTCACGTGCGGTCTTTTGAGATACCATCCAGT
 
. : . : . : . : . : . :
rJMFF012G11+ GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
rJMFF046C08+ GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
JMFN009G24- GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
rJMFF010O09+ GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
                      ____________________________________________________________
consensus GGATGCACTGATAAGAACTCAAACTGCTCCCGCTGGGCTGCTGCTGGTGAATGTGAAAAG
 
. : . : . : . : . : . :
rJMFF012G11+ AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
rJMFF046C08+ AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
JMFN009G24- AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
rJMFF010O09+ AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
                      ____________________________________________________________
consensus AATCCTTTATATATGGTGGGCACCGAAGATTCTCCGGGACACTGTAGGAAAAGCTGTGAA
 
. : . : . : . : . : . :
rJMFF012G11+ GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
rJMFF046C08+ GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
JMFN009G24- GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
rJMFF010O09+ GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
                      ____________________________________________________________
consensus GTATGCTCATCTTAGGGAAACTCAATCGACACGGGGGTTTCTGTTTCTTACTGGTTTATG
 
. : . : . : . : . : . :
rJMFF012G11+ AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
rJMFF046C08+ AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
JMFN009G24- AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
rJMFF010O09+ AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
                      ____________________________________________________________
consensus AAGCGAGAAATTTTCCCCAATGAGTCTGTGTCAGCTTGTATATCTTATAGAAACTTTGGT
 
. : . : . : . : . : . :
rJMFF012G11+ TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGCAAATTAACTTG
rJMFF046C08+ TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGCAAATTAACTTG
JMFN009G24- TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGC
rJMFF010O09+ TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGCAAATTAACTTG
                      ____________________________________________________________
consensus TTAGACATGCTATACTTGAAAAGGATCGGAATTTCTCTTGACAGTGAGCAAATTAACTTG
 
. : . : . : . : . : . :
rJMFF012G11+ CCTATTACAGAG
rJMFF046C08+ CCTATTACAGAGTCATTTTTACAT
rJMFF010O09+ CCTATTACAGAGTCATTTTTACATAGAAAATTTATCTTGGCAGGGTGGTATATATGATTT
                      ____________________________________________________________
consensus CCTATTACAGAGTCATTTTTACATAGAAAATTTATCTTGGCAGGGTGGTATATATGATTT
 
. : . : . : . : . : . :
rJMFF010O09+ ACTGTTGAGATTTTTAACAGTTGTAAGAGACTGATACCTTAACCAAATAATTCACTCATT
                      ____________________________________________________________
consensus ACTGTTGAGATTTTTAACAGTTGTAAGAGACTGATACCTTAACCAAATAATTCACTCATT