Contig 008168:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF010E04+                                                                   GGA
rJMFF028F19+                                                                CACGGA
rJMFF010E03+                                                                   GGA
                      ____________________________________________________________
consensus                                                                   CACGGA
 
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rJMFF010E04+          GACAAGAGGTTTTACTTTTGGACAATGAGATTTCCTTCAATGAGGCTATAATAGAGGAAA
rJMFF028F19+          GACAAGAGGTTTTACTTTTGGACAATGAGATTTCCTTCAATGAGGCTATAATAGAGGAAA
rJMFF010E03+          GACAAGAGGTTTTACTTTTGGACAATGAGATTTCNTTCAATGAGGCTATAATAGAGGAAA
                      ____________________________________________________________
consensus             GACAAGAGGTTTTACTTTTGGACAATGAGATTTCCTTCAATGAGGCTATAATAGAGGAAA
 
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rJMFF010E04+          GAGAGCAAGGGATACAAGAAATACAGAACCAGATTGGTGAAGTCAATGAGATTTTCAAGG
rJMFF028F19+          GAGAGCAAGGGATACAAGAAATACAGAACCAGATTGGTGAAGTCAATGAGATTTTCAAGG
rJMFF010E03+          GAGAGCAAGGGATACAAGAAATACAGAACCAGATTGGTGAAGTCAATGAGATTTTCAAGG
                      ____________________________________________________________
consensus             GAGAGCAAGGGATACAAGAAATACAGAACCAGATTGGTGAAGTCAATGAGATTTTCAAGG
 
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rJMFF010E04+          ATCTTGCTGTTCTTGTTCATGACCAAGGAGCTATGATTGATGATATTGGATCAAACATCG
rJMFF028F19+          ATCTTGCTGTTCTTGTTCATGACCAAGGAGCTATGATTGATGATATTGGATCAAACATCG
rJMFF010E03+          ATCTTGCTGTTCTTGTTCATGACCAAGGAGCTATGATTGATGATATTGGATCAAACATCG
                      ____________________________________________________________
consensus             ATCTTGCTGTTCTTGTTCATGACCAAGGAGCTATGATTGATGATATTGGATCAAACATCG
 
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rJMFF010E04+          AGAATTCTCATGCCGCAACTGCACAAGGAAGATCCCAACTTGCTAAGGCAGCAAAGACAC
rJMFF028F19+          AGAATTCTCATGCCGCAACTGCACAAGGAAGATCCCAACTTGCTAAGGCAGCAAAGACAC
rJMFF010E03+          AGAATTCTCATGCCGCAACTGCACAAGGAAGATCCCAACTTGCTAAGGCAGCAAAGACAC
                      ____________________________________________________________
consensus             AGAATTCTCATGCCGCAACTGCACAAGGAAGATCCCAACTTGCTAAGGCAGCAAAGACAC
 
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rJMFF010E04+          AAAGATCAAATTCATCTCTGGCATGTC                                 
rJMFF028F19+          AAAGATCAAATTCATCTCTGGCATGTCTACTCCTGGTGATTTTTGGCATCGTTCTCCTTA
rJMFF010E03+          AAAGATCAAATTCATCTCTGGCATGTCTACTCCTGGTGATTTTTGGCATCGTTCTCCTTA
                      ____________________________________________________________
consensus             AAAGATCAAATTCATCTCTGGCATGTCTACTCCTGGTGATTTTTGGCATCGTTCTCCTTA
 
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rJMFF028F19+          TTGTGATAATTTTACTTGCAGCGTGAAGAGAAGATACTTAAATTCAAAAAGTCTGCTTGA
rJMFF010E03+          TTGTGATAATTTTACTTGCAGCGTGAAGAGAAGATACTTAAATTCAAAAAGTCTGCTTGA
                      ____________________________________________________________
consensus             TTGTGATAATTTTACTTGCAGCGTGAAGAGAAGATACTTAAATTCAAAAAGTCTGCTTGA
 
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rJMFF028F19+          TAATGAAAGCTGACCCTTTGTGAATGTTGTGACAGAAGTTGGTTTGCAACCCATTATGGC
rJMFF010E03+          TAATGAAAGCTGACCCTTTGTGAATGTTGTGACAGAAGTTGGTTTGCAACCCATTATGGC
                      ____________________________________________________________
consensus             TAATGAAAGCTGACCCTTTGTGAATGTTGTGACAGAAGTTGGTTTGCAACCCATTATGGC
 
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rJMFF028F19+          AGAACGGAGTTCTGGCAATCACGGAATATTAGTTATGATACATGATAATTGTGACTGATA
rJMFF010E03+          AGAACGGAGTTCTGGCAATCACGGAATATTAGTTATGATACATGATAATTGTGACTGATA
                      ____________________________________________________________
consensus             AGAACGGAGTTCTGGCAATCACGGAATATTAGTTATGATACATGATAATTGTGACTGATA
 
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rJMFF028F19+          AAAATATCTTTATTTATGCGGGTTGGGGGGTTTGTGTTTGATTGTAAATGTTATTTTGTG
rJMFF010E03+          AAAATATCTTTATTTATGCGGGTTGGGGGGTTTGTGTTTGATTGTAAATGTTATTTTGTG
                      ____________________________________________________________
consensus             AAAATATCTTTATTTATGCGGGTTGGGGGGTTTGTGTTTGATTGTAAATGTTATTTTGTG
 
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rJMFF028F19+          GGGGCCAAAGGTGTGTTCCTTGCTTGGCAGGTTCTTCCCTGTCAATAAAACTAGATTTCT
rJMFF010E03+          GGGGCCAAAGGTGTGTTCCTTGCTTGGCAGGTTCTTCCCTGTCAATAAAACTAGATTTCT
                      ____________________________________________________________
consensus             GGGGCCAAAGGTGTGTTCCTTGCTTGGCAGGTTCTTCCCTGTCAATAAAACTAGATTTCT
 
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rJMFF028F19+          TTATTGACACTCAAAACATGTGAGAAT                                 
rJMFF010E03+          TTATTGACACTCAAAACATGTGAGAATTGAAGTTTACCTCTTGTTTTCTTCAAGTGGAAG
                      ____________________________________________________________
consensus             TTATTGACACTCAAAACATGTGAGAATTGAAGTTTACCTCTTGTTTTCTTCAAGTGGAAG
 
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rJMFF010E03+          TGAAGTTGGCTTGTGTAATGTGGGACTAGATGTTGTTTGCAAGAAAGATTGAGTAGTGCT
                      ____________________________________________________________
consensus             TGAAGTTGGCTTGTGTAATGTGGGACTAGATGTTGTTTGCAAGAAAGATTGAGTAGTGCT