| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009F14 | Sequence | 555 | 007310 (3) | ref|XP_009774840.1| | 8e-30 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana sylves | 679 | 008164 (3) | ref|XP_009776396.1| | 1e-100 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves |
| JMFF037F03 | Sequence | 573 | 007310 (3) | ref|XP_009774840.1| | 5e-32 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana sylves | 729 | 008164 (3) | ref|XP_009776396.1| | 1e-112 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves |
| JMSF015M04 | Sequence | 527 | 007310 (3) | ref|XP_009595898.1| | 2e-22 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana toment | 743 | 008164 (3) | ref|XP_009776396.1| | 2e-118 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves |
This contig is upended
. : . : . : . : . : . :
rJMSF015M04+ TGGGAAACGGTTCCGAACTCGGAGTACTGAAG
rJMFF037F03+ AGTACTGAAG
____________________________________________________________
consensus TGGGAAACGGTTCCGAACTCGGAGTACTGAAG
. : . : . : . : . : . :
rJMSF015M04+ TTGTCAAGTTGGTTGATTTACTTGATGAGGCCAAGAGCCGGTGTAAAACTGCTCTCATTG
rJMFF037F03+ TTGTCAAGTTGGTTGATTTACTTGATGAGGCCAAGAGCCGGTGTAAAACTGCTCTCATTG
rJMFF009F14+ TGTAAAACTGCTCTCATTG
____________________________________________________________
consensus TTGTCAAGTTGGTTGATTTACTTGATGAGGCCAAGAGCCGGTGTAAAACTGCTCTCATTG
. : . : . : . : . : . :
rJMSF015M04+ AAAGAGGCAAAGCGGAAGAGTGGACTGAAGAGGAGCTTGAGCAAACTGCTGAAGCTGTTG
rJMFF037F03+ AAAGAGGCAAAGCGGAAGAGTGGACTGAAGAGGAGCTTGAGCAAACTGCTGAAGCTGTTG
rJMFF009F14+ AAAGAGGCAAAGCGGAAGAGTGGACTGAAGAGGAGCTTGAGCAAACTGCTGAAGCTGTTG
____________________________________________________________
consensus AAAGAGGCAAAGCGGAAGAGTGGACTGAAGAGGAGCTTGAGCAAACTGCTGAAGCTGTTG
. : . : . : . : . : . :
rJMSF015M04+ GATATGGTGCTGTTAAATATGCTGACCTGAAAAACAATAGATTGACCAATTACACCTTCA
rJMFF037F03+ GATATGGTGCTGTTAAATATGCTGACCTGAAAAACAATAGATTGACCAATTACACCTTCA
rJMFF009F14+ GATATGGTGCTGTTAAATATGCTGACCTGAAAAACAATAGATTGACCAATTACACCTTCA
____________________________________________________________
consensus GATATGGTGCTGTTAAATATGCTGACCTGAAAAACAATAGATTGACCAATTACACCTTCA
. : . : . : . : . : . :
rJMSF015M04+ ATTTTGATCAGATGCTTAGCGACAAGGGTAATACTGCTGTATATCTACTGTATGCACATG
rJMFF037F03+ ATTTTGATCAGATGCTTAGCGACAAGGGTAATACTGCTGTATATCTACTGTATGCACATG
rJMFF009F14+ ATTTTGATCAGATGCTTAGCGACAAGGGTAATACTGCTGTATATCTACTGTATGCACATG
____________________________________________________________
consensus ATTTTGATCAGATGCTTAGCGACAAGGGTAATACTGCTGTATATCTACTGTATGCACATG
. : . : . : . : . : . :
rJMSF015M04+ CACGAATTTGTTCAATCATCAGGAAATCAGGAAAAGACATAGAGGAGCTAAAAAAGACTG
rJMFF037F03+ CACGAATTTGTTCAATCATCAGGAAATCAGGAAAGGACATAGAGGAGCTAAAAAAGACTG
rJMFF009F14+ CACGAATTTGTTCAATCATCAGGAAATCAGGAAAGGACATAGAGGAGCTAAAAAAGACTG
____________________________________________________________
consensus CACGAATTTGTTCAATCATCAGGAAATCAGGAAAGGACATAGAGGAGCTAAAAAAGACTG
. : . : . : . : . : . :
rJMSF015M04+ GGAGACTAGATTTAGCTCATCACGATGAGCGAATGTTGGGAGTCCATTTACTTCAATTTC
rJMFF037F03+ GGAGACTAGATTTAGCTCATCACGATGAGCGAATGTTGGGAGTCCATTTACTTCAATTTC
rJMFF009F14+ GGAGACTAGATTTAGCTCATCACGATGAGCGAATGTTGGGAGTCCATTTACTTCAATTTC
____________________________________________________________
consensus GGAGACTAGATTTAGCTCATCACGATGAGCGAATGTTGGGAGTCCATTTACTTCAATTTC
. : . : . : . : . : . :
rJMSF015M04+ CTGAGGTTGTTGAAGAAGCTTGTACGAATCTTCTACCGAATTTATTGTGCGAGTATCTCT
rJMFF037F03+ CTGAGGTTGTTGAAGAAGCTTGTACGAATCTTCTACCGAATTTATTGTGCGAGTATCTCT
rJMFF009F14+ CTGAGGTTGTTGAAGAAGCTTGTACGAATCTTCTACCGAATTTATTGTGCGAGTATCTCT
____________________________________________________________
consensus CTGAGGTTGTTGAAGAAGCTTGTACGAATCTTCTACCGAATTTATTGTGCGAGTATCTCT
. : . : . : . : . : . :
rJMSF015M04+ ATAACGTATCCGAGGACTTCACAAGATTCTACACAAACTGTCAGGTGGTTGGCTCGGCCC
rJMFF037F03+ ATAACGTATCCGAGGACTTCACAAGATTCTACACAAACTGTCAGGTGGTTGGCTCGGCCC
rJMFF009F14+ ATAACGTATCCGAGGACTTCACAAGATTCTACACAAACTGTCAGGTGGTTGGCTCGGCCC
____________________________________________________________
consensus ATAACGTATCCGAGGACTTCACAAGATTCTACACAAACTGTCAGGTGGTTGGCTCGGCCC
. : . : . : . : . : . :
rJMSF015M04+ AGGAAACAAGTAGGCTCTTGCTTTGTGAAGCAACCGCAGTTGTGATGAGGAAGTGCTTCC
rJMFF037F03+ AGGAAACAAGTAGGCTCTTGCTTTGTGAAGCAACCGCAGTTGTGATGAGGAAGTGCTTCC
rJMFF009F14+ AGGAAACAAGTAGGCTCTTGCTTTGTGAAGCAACCGCAGTTGTGATGAGGAAGTGCTTCC
____________________________________________________________
consensus AGGAAACAAGTAGGCTCTTGCTTTGTGAAGCAACCGCAGTTGTGATGAGGAAGTGCTTCC
. : . : . : . : . : . :
rJMSF015M04+ ACTTATTGGGTATCACCCCAGTTTATAAAATCTGATGACCTGTTTATACTCACCCTCTTG
rJMFF037F03+ ACTTATTGGGTATCACCCCAGTTTATAAAATCTGATGACCTGTTTATACTCACCCTCTTG
rJMFF009F14+ ACTTATTGGGTATCACCCCAGTTTATAAAATCTGATGACCTGTTTATACTCACCCTCTTG
____________________________________________________________
consensus ACTTATTGGGTATCACCCCAGTTTATAAAATCTGATGACCTGTTTATACTCACCCTCTTG
. : . : . : . : . : . :
rJMSF015M04+ ATACTTCTAATGATTATTTGCTTTGTTATTTCCCGGCATGTATTTAAACCAGGAAATATC
rJMFF037F03+ ATACTTCTAATGATTATTTGCTTTGTTATTTCCCGGCATGTATTTAAACCAGGAAATATC
rJMFF009F14+ ATACTTCTAATGATTATTTGCTTTGTTATTTCCCGGCATGTATTTAAACCAGGAAATATC
____________________________________________________________
consensus ATACTTCTAATGATTATTTGCTTTGTTATTTCCCGGCATGTATTTAAACCAGGAAATATC
. : . : . : . : . : . :
rJMSF015M04+ CTTGCTTTATACACAAACTTGCCTTTGTAAATTTGGCATGAAC
rJMFF037F03+ CTTGCTTTATACACAAACTTGCCTTTGTAAATTTGGCATGAACATGCATTAACTAGTTA
rJMFF009F14+ CTTGCTTTATACACAAACTTGCCTTTGTAAATTTGGCATGAACATGCATTAACTAGTTAC
____________________________________________________________
consensus CTTGCTTTATACACAAACTTGCCTTTGTAAATTTGGCATGAACATGCATTAACTAGTTAC