| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008J06 | Sequence | 725 | 008159 (5) | ref|XP_004238178.1| | 5e-54 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum | |||||
| JMFF028E09 | Sequence | 715 | 008159 (5) | ref|XP_004238178.1| | 2e-56 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum | |||||
| JMSF007J18 | Sequence | 377 | 006396 (3) | emb|CDP13984.1| | 1e-12 | unnamed protein product [Coffea canephora] | 726 | 008159 (5) | ref|XP_004238178.1| | 2e-57 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum |
| JMSF016O22 | Sequence | 285 | 006396 (3) | 808 | 008159 (5) | ref|XP_004238178.1| | 3e-72 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum | |||
| JMSF018J24 | Sequence | 438 | 006396 (3) | ref|XP_006354915.1| | 1e-26 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum | 725 | 008159 (5) | ref|XP_004238178.1| | 2e-57 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum |
This contig is upended
. : . : . : . : . : . :
rJMSF016O22+ TTTCCCAGGGGAACTGGATCCCTGGACAGGCCTTTGTATCTTCGTGAGAGGTT
____________________________________________________________
consensus TTTCCCAGGGGAACTGGATCCCTGGACAGGCCTTTGTATCTTCGTGAGAGGTT
. : . : . : . : . : . :
rJMSF018J24+ CTCCTTTGGGGGCCCAATATCTATATTGGG
rJMFF028E09+ GGGCCCAATATCTATATTGGG
rJMSF016O22+ TTTCATGGGGGGCAATTCTTCTCCGGTCTGCTCCTTTGGGGGCCCAATATCTATATTGGG
rJMSF007J18+ CTCCTTTGGGGGCCCAATATCTATATTGGG
rJMFF008J06+ TTGGG
____________________________________________________________
consensus TTTCATGGGGGGCAATTCTTCTCCGGTCTGCTCCTTTGGGGGCCCAATATCTATATTGGG
. : . : . : . : . : . :
rJMSF018J24+ TTTTAAGTCAAGCGGGCTTGGCCATGCTGAGCCTCAAAGCCAAGTTAGAGAAGGTGCTAA
rJMFF028E09+ TTTTAAGTCAAGCGGGCTTGGCCATGCTGAGCCTCAAAGCCAAGTTAGAGAAGGTGCTAA
rJMSF016O22+ TTTTAAGTCAAGCGGGCTTGGCCATGCTGAGCCTCAAAGCCAAGTTAGAGAAGGTGCTAA
rJMSF007J18+ TTTTAAGTCAAGCGGGCTTGGCCGTGCTGAGCCTCAAAGCCAAGTTAGAGAAGGTGCTAA
rJMFF008J06+ TTTTAAGTCAAGCGGGCTTGGCCATGCTGAGCCTCAAAGCCAAGTTAGAGAAGGTGCTAA
____________________________________________________________
consensus TTTTAAGTCAAGCGGGCTTGGCCATGCTGAGCCTCAAAGCCAAGTTAGAGAAGGTGCTAA
. : . : . : . : . : . :
rJMSF018J24+ CAGTGAAAGTTCTAATTTTTCTGGAGATCTTGCTGTTACTGCTTTTGCGGATCTTTCTTT
rJMFF028E09+ CAGTGAAAGTTCTAATTTTTCTGGAGATCTTGCTGTTACTGCTTTTGCGGATCTTTCTTT
rJMSF016O22+ CAGTGAAAGTTCTAATTTTTCTGGAGATCTTGCTGTTACTGCTTTTGCGGATCTTTCTTT
rJMSF007J18+ CAGTGAAAGTTCTAATTTTTCTGGAGATCTTGCTGTTACTGCTTTTGCGGATCTTTCTTT
rJMFF008J06+ CAGTGAAAGTTCTAATTTTTCTGGAGATCTTGCTGTTACTGCTTTTGCGGATCTTTCTTT
____________________________________________________________
consensus CAGTGAAAGTTCTAATTTTTCTGGAGATCTTGCTGTTACTGCTTTTGCGGATCTTTCTTT
. : . : . : . : . : . :
rJMSF018J24+ TGATCTTCCACTGAAGCTATTCAGAGACGCTGGGATTCATGGCCACGCATTTGCCTGTGC
rJMFF028E09+ TGATCTTCCACTGAAGCTATTCAGAGACGCTGGGATTCATGGCCACGCATTTGCCTGTGC
rJMSF016O22+ TGATCTTCCACTGAAGCTATTCAGAGACGCTGGGATTCATGGCCACGCATTTGCCTGTGC
rJMSF007J18+ TGATCTTCCACTGAAGCTATTCAGAGACGCTGGGATTCATGGCCACGCATTTGCCTGTGC
rJMFF008J06+ TGATCTTCCACTGAAGCTATTCAGAGACGCTGGGATTCATGGCCACGCATTTGCCTGTGC
____________________________________________________________
consensus TGATCTTCCACTGAAGCTATTCAGAGACGCTGGGATTCATGGCCACGCATTTGCCTGTGC
. : . : . : . : . : . :
rJMSF018J24+ TGGAAACCTTGACAGATTGACTGAAAATACATTCCGAGACCTCTCTCTCCAGAAACTCCA
rJMFF028E09+ TGGAAACCTTGACAGATTGACTGAAAATACATTCCGAGACCTCTCTCTCCAGAAACTCCA
rJMSF016O22+ TGGAAACCTTGACAGATTGACTGAAAATACATTCCGAGACCTCTCTCTCCAGAAACTCCA
rJMSF007J18+ TGGAAACCTTGACAGATTGACTGAAAATACATTCCGAGACCTCTCTCTCCAGAAACTCCA
rJMFF008J06+ TGGAAACCTTGACAGATTGACTGAAAATACATTCCGAGACCTCTCTCTCCAGAAACTCCA
____________________________________________________________
consensus TGGAAACCTTGACAGATTGACTGAAAATACATTCCGAGACCTCTCTCTCCAGAAACTCCA
. : . : . : . : . : . :
rJMSF018J24+ AGAATCATACAAGGCCTCAGCAGGATTTGGAATTGTTGTTCCACTTAAGCGATTCCGAAT
rJMFF028E09+ AGAATCATACAAGGCCTCAGCAGGATTTGGAATTGTTGTTCCACTTAAGCGATTCCGAAT
rJMSF016O22+ AGAATCATACAAGGCCTCAGCAGGATTTGGAATTGTTGTTCCACTTAAGCGATTCCGAAT
rJMSF007J18+ AGAATCATACAAGGCCTCAGCAGGATTTGGAATTGTTGTTCCACTTAAGCGATTCCGAAT
rJMFF008J06+ AGAATCATACAAGGCCTCAGCAGGATTTGGAATTGTTGTTCCACTTAAGCGATTCCGAAT
____________________________________________________________
consensus AGAATCATACAAGGCCTCAGCAGGATTTGGAATTGTTGTTCCACTTAAGCGATTCCGAAT
. : . : . : . : . : . :
rJMSF018J24+ GGAGGTCAATTACTGCCAAATACTGAAACAACAAGAGCACGATCGAGGGAAGACTGGTTT
rJMFF028E09+ GGAGGTCAATTACTGCCAAATACTGAAACAACAAGAGCACGATCGAGGGAAGACTGGTTT
rJMSF016O22+ GGAGGTCAATTACTGCCAAATACTGAAACAACAAGAGCACGATCGAGGGAAGACTGGTTT
rJMSF007J18+ GGAGGTCAATTACTGCCAAATACTGAAACAACAAGAGCACGATCGAGGGAAGACTGGTTT
rJMFF008J06+ GGAGGTCAATTACTGCCAAATACTGAAACAACAAGAGCACGATCGAGGGAAGACTGGTTT
____________________________________________________________
consensus GGAGGTCAATTACTGCCAAATACTGAAACAACAAGAGCACGATCGAGGGAAGACTGGTTT
. : . : . : . : . : . :
rJMSF018J24+ GCAGCTAAGCTTTTCTTCATCATCATCATAGAAGCCACAAATTTTTCGTTTCTTCAACTT
rJMFF028E09+ GCAGCTAAGCTTTTCTTCATCATCATCATAGAAGCCACAAATTTTTCGTTTCTTCAACTT
rJMSF016O22+ GCAGCTAAGCTTTTCTTCATCATCATCATAGAAGCCACAAATTTTTCGTTTCTTCAACTT
rJMSF007J18+ GCAGCTAAGCTTTTCTTCATCATCATCATAGAAGCCACAAATTTTTCGTTTCTTCAACTT
rJMFF008J06+ GCAGCTAAGCTTTTCTTCATCATCATCATAGAAGCCACAAATTTTTCGTTTCTTCAACTT
____________________________________________________________
consensus GCAGCTAAGCTTTTCTTCATCATCATCATAGAAGCCACAAATTTTTCGTTTCTTCAACTT
. : . : . : . : . : . :
rJMSF018J24+ GAGATATCCTGCTACTTCAAGTTAATCATGATCATCTAATGAAGGTAAAAATTCATCGCT
rJMFF028E09+ GAGATATCCTGCTACTTCAAGTTAATCATGATCATCTAATGAAGGTAAAAATTCATCGCT
rJMSF016O22+ GAGATATCCTGCTACTTCAAGTTAATCATGATCATCTAATGAAGGTAAAAATTCATCGCT
rJMSF007J18+ GAGATATCCTGCTACTTCAAGTTAATCATGATCATCTAATGAAGGTAAAAATTCATCGCT
rJMFF008J06+ GAGATATCCTGCTACTTCAAGTTAATCATGATCATCTAATGAAGGTAAAAATTCATCGCT
____________________________________________________________
consensus GAGATATCCTGCTACTTCAAGTTAATCATGATCATCTAATGAAGGTAAAAATTCATCGCT
. : . : . : . : . : . :
rJMSF018J24+ TTTTCCCCGTTTTAAATGGCTTTCAGATTGATCTTCTTCTCTACTTCAAAACTTCCATAC
rJMFF028E09+ TTTTCCCCGTTTTAAATGGCTTTCAGATTGATCTTCTTCTCTACTTCAAAACTTCCATAC
rJMSF016O22+ TTTTCCCCGTTTTAAATGGCTTTCAGATTGATCTTCTTCTCTACTTCAAAACTTCCATAC
rJMSF007J18+ TTTTCCCCGTTTTAAATGGCTTTCAGATTGATCTTCTTCTCTACTTCAAAACTTCCATAC
rJMFF008J06+ TTTTCCCCGTTTTAAATGGCTTTCAGATTGATCTTCTTCTCTACTTCAAAACTTCCATAC
____________________________________________________________
consensus TTTTCCCCGTTTTAAATGGCTTTCAGATTGATCTTCTTCTCTACTTCAAAACTTCCATAC
. : . : . : . : . : . :
rJMSF018J24+ AGTTTCAATTCTATGATCCAACAATTACAACATTCAATCTCCAAGAAAAATGCTACTCAG
rJMFF028E09+ AGTTTCAATTCTATGATCCAACAATTACAACATTCAATCTCCAAGAAAAATGCTACTCAG
rJMSF016O22+ AGTTTCAATTCTATGATCCAACAATTACAACATTCAATCTCCAAGAAAAATGCTACTCAG
rJMSF007J18+ AGTTTCAATTCTATGATCCAACAATTACAACATTCAATCTCCAAGAAAAATGCTACTCAG
rJMFF008J06+ AGTTTCAATTCTATGATCCAACAATTACAACATTCAATCTCCAAGAAAAATGCTACTCAG
____________________________________________________________
consensus AGTTTCAATTCTATGATCCAACAATTACAACATTCAATCTCCAAGAAAAATGCTACTCAG
. : . : . : . : . : . :
rJMSF018J24+ TCAAACATTGTAGGCTTGTAGCATCTTTGTAATCTAGTTGAGGAATAAGACAAAATGGTT
rJMFF028E09+ TCAAACATTGTAGGCTTGTAGCATCTTTGTAATCTAGTTGAGGAATAAGACAAAATGGTT
rJMSF016O22+ TCAAACATTGTAGGCTTGTAGCATCTTTGTAATCTAGTTGAGGAATAAGACAAAATGGTT
rJMSF007J18+ TCAAACATTGTAGGCTTGTAGCATCTTTGTAATCTAGTTGAGGAATAAGACAAAATGGTT
rJMFF008J06+ TCAAACATTGTAGGCTTGTAGCATCTTTGTAATCTAGTTGAGGAATAAGACAAAATGGTT
____________________________________________________________
consensus TCAAACATTGTAGGCTTGTAGCATCTTTGTAATCTAGTTGAGGAATAAGACAAAATGGTT
. : . : . : . : . : . :
rJMSF018J24+ GGTTGATATTGAGACAGGATTACCAGCAGGAGAT
rJMFF028E09+ GGTTGATATTGAGACAGGATTACCAGCAGGAGAT
rJMSF016O22+ GGTTGATATTGAGACAGGATTACCAGCAGGAGAT
rJMSF007J18+ GGTTGATATTGAGACAGGATTACCAGCAGGAGAT
rJMFF008J06+ GGTTGATATTGAGACAGGATTACCAGCAGGAGATTACTTTATGTGGGTAGAAATAAAGAA
____________________________________________________________
consensus GGTTGATATTGAGACAGGATTACCAGCAGGAGATTACTTTATGTGGGTAGAAATAAAGAA