| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008D10 | Sequence | 657 | 006651 (4) | ref|XP_004238462.1| | 2e-102 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Solanum lycopersicum] | 793 | 008155 (5) | ref|XP_009590777.1| | 6e-119 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform |
| JMFF032D10 | Sequence | 551 | 006651 (4) | ref|XP_004238462.1| | 1e-76 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Solanum lycopersicum] | 747 | 008155 (5) | ref|XP_009590777.1| | 7e-120 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform |
| JMFF032K08 | Sequence | 736 | 008155 (5) | ref|XP_009590777.1| | 4e-121 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform | |||||
| JMSF040C02 | Sequence | 675 | 006651 (4) | ref|XP_004238462.1| | 8e-106 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Solanum lycopersicum] | 929 | 008155 (5) | ref|XP_009590777.1| | 2e-142 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform |
| JMSF049M19 | Sequence | 670 | 006651 (4) | ref|XP_004238462.1| | 9e-80 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Solanum lycopersicum] | 743 | 008155 (5) | ref|XP_009590777.1| | 5e-128 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform |
This contig is upended
. : . : . : . : . : . :
rJMSF040C02+ AAGAAGCTGGGCGCCAAGTTGTATGAAGATTCTTGTGTTTGA
____________________________________________________________
consensus AAGAAGCTGGGCGCCAAGTTGTATGAAGATTCTTGTGTTTGA
. : . : . : . : . : . :
rJMSF040C02+ TGAGGCAGACCACATGTTAGCAGAGAGTGGCTTTCCAGGATGATTCTGTAAAAAATAATG
____________________________________________________________
consensus TGAGGCAGACCACATGTTAGCAGAGAGTGGCTTTCCAGGATGATTCTGTAAAAAATAATG
. : . : . : . : . : . :
rJMSF040C02+ AAGGCTATTGTCAGAGGCAAAGCCGATTGCCAGGTGCTCCTGTTTTCTGCAACCTTCAAT
____________________________________________________________
consensus AAGGCTATTGTCAGAGGCAAAGCCGATTGCCAGGTGCTCCTGTTTTCTGCAACCTTCAAT
. : . : . : . : . : . :
rJMSF049M19+ CTGTCAAGGGTTTTGTGACGAAAATTGTTAATGACCTCTTTGTAAAAGATTACAAT
rJMSF040C02+ GAAGCTGTCAAGGGTTTTGTGACGAAAATTGTCAAAGACCTCTTTGTAAAAGATTACAAT
rJMFF032K08+ GTAAAAGATTACAAT
rJMFF032D10+ GTAAAAGATTACAAT
rJMFF008D10+ AAAAGATTACAAT
____________________________________________________________
consensus GAAGCTGTCAAGGGTTTTGTGACGAAAATTGTTAATGACCTCTTTGTAAAAGATTACAAT
. : . : . : . : . : . :
rJMSF049M19+ CAGCTTTTTGTAAAGAAGGAAGAACTTTCACTGGAGTCTGTGAAGCAGTATAAGGTGCAA
rJMSF040C02+ CAGCTCTTTGTAAAGAAGGAAGAACTTTCACTGGAGTCTGTGAAGCAGTATAAGGTGCAA
rJMFF032K08+ CAGCTCTTTGTAAAGAAGGAAGAACTTTCACTGGAGTCTGTGAAGCAGTATAAGGTGCAA
rJMFF032D10+ CAGCTCTTNGTAAAGAAGGAAGAACTTTCACTGGAGTCTGTGAAGCAGTATAAGGTGCAA
rJMFF008D10+ CAGCTCTTNGTAAAGAAGGAAGAACTTTCACTGGAGTCTGTGAAGCAGTATAAGGTGCAA
____________________________________________________________
consensus CAGCTCTTTGTAAAGAAGGAAGAACTTTCACTGGAGTCTGTGAAGCAGTATAAGGTGCAA
. : . : . : . : . : . :
rJMSF049M19+ TGCCCTGATGAACTTTCAAAGGTCATGGTGATTAAGGACAAAATACTTGAATTGGCGCAA
rJMSF040C02+ TGCCCTGATGAACTTTCAAAGGTCATGGTGATTAAGGATAAAATACTTGAATTGGCGTCA
rJMFF032K08+ TGCCCTGATGAACTTTCAAAGGTCATGGTGATTAAGGATAAAATACTTGAATTGGCGTCA
rJMFF032D10+ TGCCCTGATGAACTTTCAAAGGTCATGGTGATTAAGGATAAAATACTTGAATTGGCGTCA
rJMFF008D10+ TGCCCTGATGAACTTTCAAAGGTCATGGTGATTAAGGATAAAATACTTGAATTGGCGTCA
____________________________________________________________
consensus TGCCCTGATGAACTTTCAAAGGTCATGGTGATTAAGGATAAAATACTTGAATTGGCGTCA
. : . : . : . : . : . :
rJMSF049M19+ AAGGTGGGGCAGACAATTATCTTTGTTCGTACCAGAGACAGTGCTCATATGTTGCATAAA
rJMSF040C02+ AAGGTGGGGCAGACAATTATCTTTGTTCGTACCAGAAATAGTGCTAATATGTTGCATAAG
rJMFF032K08+ AAGGTGGGGCAGACAATTATCTTTGTTCGTACCAGAAATAGTGCTAATATGTTGCATAAG
rJMFF032D10+ AAGGTGGGGCAGACAATTATCTTTGTTCGTACCAGAAATAGTGCTAATATGTTGCATAAG
rJMFF008D10+ AAGGTGGGGCAGACAATTATCTTTGTTCGTACCAGAAATAGTGCTAATATGTTGCATAAG
____________________________________________________________
consensus AAGGTGGGGCAGACAATTATCTTTGTTCGTACCAGAAATAGTGCTAATATGTTGCATAAG
. : . : . : . : . : . :
rJMSF049M19+ TCCCTTGTTGACTATGGCTATGAGGTTACAACAATTCAAGGTGCTCTGAAGCAAGAAGAC
rJMSF040C02+ TCTCTTGTTGACTATGGCTATGAGGTAACAACAATTCAAGGTGCTTTGAAGCAAGAAGAC
rJMFF032K08+ TCTCTTGTTGACTATGGCTATGAGGTAACAACAATTCAAGGTGCTTTGAAGCAAGAAGAC
rJMFF032D10+ TCTCTTGTTGACTATGGCTATGAGGTAACAACAATTCAAGGTGCTTTGAAGCAAGAAGAC
rJMFF008D10+ TCTCTTGTTGACTATGGCTATGAGGTAACAACAATTCAAGGTGCTTTGAAGCAAGAAGAC
____________________________________________________________
consensus TCTCTTGTTGACTATGGCTATGAGGTAACAACAATTCAAGGTGCTTTGAAGCAAGAAGAC
. : . : . : . : . : . :
rJMSF049M19+ AGAGATAAAATTATCAAGGAGTTCAAGGAAGGTCTTACACAAGTTCTTATATCAACGGAT
rJMSF040C02+ AGAGACAAAATTATTAAGGAGTTCAAGGAAGGTCTTACACAAGTTCTTATATCAACGGAT
rJMFF032K08+ AGAGACAAAATTATTAAGGAGTTCAAGGAAGGTCTTACACAAGTTCTTATATCAACGGAT
rJMFF032D10+ AGAGACAAAATTATTAAGGAGTTCAAGGAAGGTCTTACACAAGTTCTTATATCAACGGAT
rJMFF008D10+ AGAGACAAAATTATTAAGGAGTTCAAGGAAGGTCTTACACAAGTTCTTATATCAACGGAT
____________________________________________________________
consensus AGAGACAAAATTATTAAGGAGTTCAAGGAAGGTCTTACACAAGTTCTTATATCAACGGAT
. : . : . : . : . : . :
rJMSF049M19+ CTTCTTGCTCGGGGATTTGACCAATCACAGGTCAATTTGGTTGTGAATTATGACCTTCCG
rJMSF040C02+ ATTCTTGCTCGGGGATTTGACCAATCACAGGTCAATTTGGTTGTGAATTATGATCTTCCG
rJMFF032K08+ ATTCTTGCTCGGGGATTTGACCAATCACAGGTCAATTTGGTTGTGAATTATGATCTTCCG
rJMFF032D10+ ATTCTTGCTCGGGGATTTGACCAATCACAGGTCAATTTGGTTGTGAATTATGATCTTCCG
rJMFF008D10+ ATTCTTGCTCGGGGATTTGACCAATCACAGGTCAATTTGGTTGTGAATTATGATCTTCCG
____________________________________________________________
consensus ATTCTTGCTCGGGGATTTGACCAATCACAGGTCAATTTGGTTGTGAATTATGATCTTCCG
. : . : . : . : . : . :
rJMSF049M19+ GTGCAATATGGGCATTGGTCAGATCCAGATTATGAGGTATACTTGCATCGGATTGGCAGA
rJMSF040C02+ GTGCAATATGGCCATTGGTCAGATCCAGATTATGAGGTATACTTGCATCGGATTGGCAGA
rJMFF032K08+ GTGCAATATGGCCATTGGTCAGATCCAGATTATGAGGTATACTTGCATCGGATTGGCAGA
rJMFF032D10+ GTGCAATATGGCCATTGGTCAGATCCAGATTATGAGGTATACTTGCATCGGATTGGCAGA
rJMFF008D10+ GTGCAATATGGCCATTGGTCAGATCCAGATTATGAGGTATACTTGCATCGGATTGGCAGA
____________________________________________________________
consensus GTGCAATATGGCCATTGGTCAGATCCAGATTATGAGGTATACTTGCATCGGATTGGCAGA
. : . : . : . : . : . :
rJMSF049M19+ GCAGGACGTTTTGGCCGCAAAGGTGCTGTGTTCAACTTGCTTTACAATGATAAAGACACC
rJMSF040C02+ GCAGGACGTTTTGGCCGCAAAGGTGCTGTGTTTAACCTGCTTTGCAACGATACAGACACC
rJMFF032K08+ GCAGGACGTTTTGGCCGCAAAGGTGCTGTGTTTAACCTGCTTTGCAACGATACAGACACC
rJMFF032D10+ GCAGGACGTTTTGGCCGCAAAGGTGCTGTGTTTAACCTGCTTTGCAACGATACAGACACC
rJMFF008D10+ GCAGGACGTTTTGGCCGCAAAGGTGCTGTGTTTAACCTGCTTTGCAACGATACAGACACC
____________________________________________________________
consensus GCAGGACGTTTTGGCCGCAAAGGTGCTGTGTTTAACCTGCTTTGCAACGATACAGACACC
. : . : . : . : . : . :
rJMSF049M19+ ATGCTGATGTCAAAAATTGAGAACCACTTCAATAGTCCCGTGGCCGAGGTGAGATCTTGG
rJMSF040C02+ ATGCTAATGTCGAAAATTGAGAACCACTTCAATAGTCCCGTGGCCGAGGTGACATCTTGG
rJMFF032K08+ ATGCTAATGTCGAAAATTGAGAACCACTTCAATAGTCCCGTGGCCGAGGTGACATCTTGG
rJMFF032D10+ ATGCTAATGTCGAAAATTGAGAACCACTTCAATAGTCCCGTGGCCGAGGTGACATCTTGG
rJMFF008D10+ ATGCTAATGTCGAAAATTGAGAACCACTTCAATAGTCCCGTGGCCGAGGTGACATCTTGG
____________________________________________________________
consensus ATGCTAATGTCGAAAATTGAGAACCACTTCAATAGTCCCGTGGCCGAGGTGACATCTTGG
. : . : . : . : . : . :
rJMSF049M19+ CAAAGTGATACAGAATTTGAGGCTGCTTTGAAGACTGCGGGGCTACTCTAAGTTGCAAGT
rJMSF040C02+ CAAAGTGATACAGAATTTGAGGCTGCTTTGAAGACCGCTGGGCTACTCTAAGTTACAAGT
rJMFF032K08+ CAAAGTGATACAGAATTTGAGGCTGCTTTGAAGACCGCTGGGCTACTCTAAGTTACAAGT
rJMFF032D10+ CAAAGTGATACAGAATTTGAGGCTGCTTTGAAGACCGCTGGGCTACTCTAAGTTACAAGT
rJMFF008D10+ CAAAGTGATACAGAATTTGAGGCTGCTTTGAAGACCGCTGGGCTACTCTAAGTTACAAGT
____________________________________________________________
consensus CAAAGTGATACAGAATTTGAGGCTGCTTTGAAGACCGCTGGGCTACTCTAAGTTACAAGT
. : . : . : . : . : . :
rJMSF049M19+ TTCCGGCAGGAAT
rJMSF040C02+ TTCCGGCAGGAATTTTCTGAATGATCATTGTATTTGGTGTTCTATGATGAGAGTATTACT
rJMFF032K08+ TTCCGGCAGGAATTTTCTGAATGATCATTGTATTTGGTGTTCTATGATGAGAGTATTACT
rJMFF032D10+ TTCCGGCAGGAATTTTCTGAATGATCATTGTATTTGGTGTTCTATGATGAGAGTATTACT
rJMFF008D10+ TTCCGGCAGGAATTTTCTGAATGATCATTGTATTTGGTGTTCTATGATGAGAGTATTACT
____________________________________________________________
consensus TTCCGGCAGGAATTTTCTGAATGATCATTGTATTTGGTGTTCTATGATGAGAGTATTACT
. : . : . : . : . : . :
rJMSF040C02+ TTATAGATGAGAATGAGTTGTATTGCCCTATTTTTGTGTGGTATAGA
rJMFF032K08+ TTATAGATGAGAATGAGTTGTATTGCCCTATTTTTGTGTGGTATAGACCTTATTTATATA
rJMFF032D10+ TTATAGATGAGAATGAGTTGTATTGCCCTATTTTTGTGTGGTATAGACCTTATTTATATA
rJMFF008D10+ TTATAGATGAGAATGAGTTGTATTGCCCTATTTTTGTGTGGTATAGACCTTATTTATATA
____________________________________________________________
consensus TTATAGATGAGAATGAGTTGTATTGCCCTATTTTTGTGTGGTATAGACCTTATTTATATA
. : . : . : . : . : . :
rJMFF032K08+ T
rJMFF032D10+ TTGCAATTTC
rJMFF008D10+ TTGCAATTTCGTGTACTTTATTCAGTTTTTGGCATTTGACGTGTGTTTTTGGTAAAAAAT
____________________________________________________________
consensus TTGCAATTTCGTGTACTTTATTCAGTTTTTGGCATTTGACGTGTGTTTTTGGTAAAAAAT