Contig 008153:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008B18Sequence551008153 (10)ref|XP_009610114.1|2e-06PREDICTED: uncharacterized protein LOC104103875 isoform X1 [Nicotiana tomentosi730008153 (10)ref|XP_002321219.1|2e-61hypothetical protein POPTR_0014s17100g [Populus trichocarpa] gb|EEE99534.1| hypo
JMFF012D12Sequence486008153 (10)ref|XP_009610114.1|1e-08PREDICTED: uncharacterized protein LOC104103875 isoform X1 [Nicotiana tomentosi709008153 (10)ref|XP_002321219.1|3e-62hypothetical protein POPTR_0014s17100g [Populus trichocarpa] gb|EEE99534.1| hypo
JMFF030G09Sequence468008153 (10)720008153 (10)ref|XP_002321219.1|3e-61hypothetical protein POPTR_0014s17100g [Populus trichocarpa] gb|EEE99534.1| hypo
JMSF003P09Sequence233008153 (10)504008153 (10)ref|XP_002321219.1|5e-62hypothetical protein POPTR_0014s17100g [Populus trichocarpa] gb|EEE99534.1| hypo
JMSF017P05Sequence469008153 (10)gb|ABK96133.1|2e-20unknown [Populus trichocarpa]783008153 (10)ref|XP_002321219.1|6e-62hypothetical protein POPTR_0014s17100g [Populus trichocarpa] gb|EEE99534.1| hypo

Alignment

This contig is upended


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JMSF003P09-            GAAGTGGCATTTATTCACCTAACCTCACTGTGTGGATAACAAAGGCTCCTTCTCCAGCT
JMFF030G09-                                                     AAGGCTCCTTCTCCAGCT
JMFF008B18-                                                     AAGGCTCCTTCTCCAGCT
                      ____________________________________________________________
consensus              GAAGTGGCATTTATTCACCTAACCTCACTGTGTGGATAACAAAGGCTCCTTCTCCAGCT
 
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JMSF003P09-           CTCTCTCTCTCTTCCTACTTCTTTCTTCTCTGTTCACCGCTAACATTTATCGTTCTCCCC
JMFF030G09-           CTCTCTCTCTCTTCCTACTTCTTTCTTCTCTGTTCACCGCTAACATTTATCGTTCTCCCC
JMFF008B18-           CTCTCTCTCTCTTCCTACTTCTTTCTTCTCTGTTCACCGCTAACATTTATCGTTCTCCCC
JMFF012D12-                                                           ATCGTTCTCCCC
                      ____________________________________________________________
consensus             CTCTCTCTCTCTTCCTACTTCTTTCTTCTCTGTTCACCGCTAACATTTATCGTTCTCCCC
 
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JMSF003P09-           CTTCCATAAAAAAATATTCTCAAAAAGAAAAAGAAAAGAGTAGGAAGTAGACATAGTAAT
JMFF030G09-           CTTCCATAAAAAAATATTCTCAAAAAGAAAAAGAAAAGAGTAGGAAGTAGACATAGTAAT
JMFF008B18-           CTTCCATAAAAAAATATTCTCAAAAAGAAAAAGAAAAGAGTAGGAAGTAGACATAGTAAT
JMFF012D12-           CTTCCATAAAAAAATATTCTCAAAAAGAAAAAGAAAAGAGTAGGAAGTAGACATAGTAAT
JMSF017P05-                                                                     AT
                      ____________________________________________________________
consensus             CTTCCATAAAAAAATATTCTCAAAAAGAAAAAGAAAAGAGTAGGAAGTAGACATAGTAAT
 
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JMSF003P09-           GTTTGATTAGTGGAGAGATCAGAGAAGAAGCTCGATTAGGCTTACTTGTCTCAG      
JMFF030G09-           GTTTGATTAGTGGAGAGATCAGAGAAGAAGCTCGATTAGGCTTACTTGTCTCAGAGGCGA
JMFF008B18-           GTTTGATTAGTGGAGAGATCAGAGAAGAAGCTCGATTAGGCTTACTTGTCTCAGAGGCGA
JMFF012D12-           GTTTGATTAGTGGAGAGATCAGAGAAGAAGCTCGATTAGGCTTACTTGTCTCAGAGGCGA
JMSF017P05-           GTTTGATTAGTGGAGAGATCAGAGAAGAAGCTCGATTAGGCTTACTTGTCTCAGAGGCGA
rJMSF017P05+                                      AGCTCGATTAGGCTTACTTGTCTCAGAGGCGA
                      ____________________________________________________________
consensus             GTTTGATTAGTGGAGAGATCAGAGAAGAAGCTCGATTAGGCTTACTTGTCTCAGAGGCGA
 
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JMFF030G09-           TGGCGGCAACGACGGGAGGATCCATCGCGGCGCTATCCAGCTTTCGTTCGTCTTCCAGTC
JMFF008B18-           TGGCGGCAACGACGGGAGGATCCATCGCGGCGCTATCCAGCTTTCGTTCGTCTTCCAGTC
JMFF012D12-           TGGCGGCAACGACGGGAGGATCCATCGCGGCGCTATCCAGCTTTCGTTCGTCTTCCAGTC
JMSF017P05-           TGGCGGCAACGACGGGAGGATCCATCGCGGCGCTATCCAGCTTTCGTTCGTCTTCCAGTC
rJMSF017P05+          TGGCGGCAACGACGGGAGGATCCATCGCGGCGCTATCCAGCTTTCGTTCGTCTTCCAGTC
rJMFF030G09+                                                                     C
rJMFF008B18+                                                           GTCTTCCAGTC
                      ____________________________________________________________
consensus             TGGCGGCAACGACGGGAGGATCCATCGCGGCGCTATCCAGCTTTCGTTCGTCTTCCAGTC
 
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JMFF030G09-           TCAGCCGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
JMFF008B18-           TCAGCCGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
JMFF012D12-           TCAGCCGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
JMSF017P05-           TCAGCCGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
rJMSF017P05+          TCAGCCGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
rJMFF030G09+          TCAGCCGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
rJMFF012D12+               CGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
rJMFF008B18+          TCAGCCGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
                      ____________________________________________________________
consensus             TCAGCCGTAAAGCTAAGTCCGGCACTTGCGTTCCGGTGATTTGCAGAGTCGTCTTTCCGC
 
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JMFF030G09-           AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
JMFF008B18-           AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
JMFF012D12-           AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
JMSF017P05-           AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
rJMSF017P05+          AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
rJMFF030G09+          AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
rJMFF012D12+          AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
rJMFF008B18+          AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
                      ____________________________________________________________
consensus             AACGAAACATTGCCTGCTTTGCCGTTCAGGAATCGTCCGCAGCAGTGGCTGCTGAAACGA
 
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JMFF030G09-           AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
JMFF008B18-           AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
JMFF012D12-           AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
JMSF017P05-           AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
rJMSF017P05+          AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
rJMFF030G09+          AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
rJMFF012D12+          AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
rJMFF008B18+          AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
                      ____________________________________________________________
consensus             AAAAGGAAGAGGAGCCGGTTGAGGAAACGGAAAAGCCGAAGCGAAAACCGGTCGCCAAAG
 
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JMFF030G09-           CGCCTGCCAAACCACTGCCTCAGATG                                  
JMFF008B18-           CGCCTGCCAAACCACTGCCTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
JMFF012D12-           CGCCTGCCAAACCACTGCCTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
JMSF017P05-           CGCCTGCCAAACCACTGCCTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
rJMSF017P05+          CGCCTGCCAAACCACTGCCTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
rJMFF030G09+          CGCCTGCCAAACCACTGCCTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
rJMSF003P09+                            CTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
rJMFF012D12+          CGCCTGCCAAACCACTGCCTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
rJMFF008B18+          CGCCTGCCAAACCACTGCCTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
                      ____________________________________________________________
consensus             CGCCTGCCAAACCACTGCCTCAGATGATGGAAGAGGATGTCATTCCTTCATTGAAATCGA
 
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JMFF008B18-           CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTTTTTCAACGA           
JMFF012D12-           CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTCTTTCAACGATAACA      
JMSF017P05-           CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTCTTTCAACGATAACAAGCTGG
rJMSF017P05+          CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTCTTTCAACGATAACAAGCTGG
rJMFF030G09+          CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTTTTTCAACGATAACAAGCTGG
rJMSF003P09+          CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTCTTTCAACGATAACAAGCTGG
rJMFF012D12+          CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTCTTTCAACGATAACAAGCTGG
rJMFF008B18+          CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTTTTTCAACGATAACAAGCTGG
                      ____________________________________________________________
consensus             CTCTACAAGCTCAAGATGATATCACTGAACTCGAACTGTCTTTCAACGATAACAAGCTGG
 
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JMSF017P05-           AGGGTTCGTTTCTGAAGAAGGGTTATCCATATTCCTTCTGGGCGTT              
rJMSF017P05+          AGGGTTCGTTTCTGAAGAAGGGTTATCCATATTCCTTCTGGGCGTTTTTCCCCAACGGAC
rJMFF030G09+          AGGGTTCGTTTCTGAAGAAGGGTTATCCATATTCCTTCTGGGCGTTTTTCCCCAACGGAC
rJMSF003P09+          AGGGTTCGTTTCTGAAGAAGGGTTATCCATATTCCTTCTGGGCGTTTTTCCCCAACGGAC
rJMFF012D12+          AGGGTTCGTTTCTGAAGAAGGGTTATCCATATTCCTTCTGGGCGTTTTTCCCCAACGGAC
rJMFF008B18+          AGGGTTCGTTTCTGAAGAAGGGTTATCCATATTCCTTCTGGGCGTTTTTCCCCAACGGAC
                      ____________________________________________________________
consensus             AGGGTTCGTTTCTGAAGAAGGGTTATCCATATTCCTTCTGGGCGTTTTTCCCCAACGGAC
 
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rJMSF017P05+          TTACCGGTCCAAAAGGATTCTCACTTTCATCATATGGAAATGGAGCCAGCACTGTAGAAC
rJMFF030G09+          TTACCGGTCCAAAAGGATTCTCACTTTCATCATATGGAAATGGAGCCAGCACTGTAGAAC
rJMSF003P09+          TTACCGGTCCAAAAGGATTCTCACTTTCATCATATGGAAATGGAGCCAGCACTGTAGAAC
rJMFF012D12+          TTACCGGTCCAAAAGGATTCTCACTTTCATCATATGGAAATGGAGCCAGCACTGTAGAAC
rJMFF008B18+          TTACCGGTCCAAAAGGATTCTCACTTTCATCATATGGAAATGGAGCCAGCACTGTAGAAC
                      ____________________________________________________________
consensus             TTACCGGTCCAAAAGGATTCTCACTTTCATCATATGGAAATGGAGCCAGCACTGTAGAAC
 
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rJMSF017P05+          CTTTTCTTGTTGACGAGAAAAAAATTACAGAGAAACACATTGTGTTCTGGGTTGAGAAGC
rJMFF030G09+          CTTTTCTTGTTGACGAGAAAAAAATTACAGAGAAACACATTGTGTTCTGGGTTGAGAAGC
rJMSF003P09+          CTTTTCTTGTTGACGAGAAAAAAATTACAGAGAAACACATTGTGTTGTGGGTTGAGAAGC
rJMFF012D12+          CTTTTCTTGTTGACGAGAAAAAAATTACAGAGAAACACATTGTGTTCTGGGTTGAGAAGC
rJMFF008B18+          CTTTTCTTGTTGACGAGAAAAAAATTACAGAGAAACACATTGTGTTCTGGGTTGAGAAGC
                      ____________________________________________________________
consensus             CTTTTCTTGTTGACGAGAAAAAAATTACAGAGAAACACATTGTGTTCTGGGTTGAGAAGC
 
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rJMSF017P05+          GTTTGGCTGCTCAGGGGATCATCCCTGTCTGGAAAGAATAGGCATGTTTCTCAATTTCCA
rJMFF030G09+          GTTTGGCTGCTCAGGGGATCATCCCTGTCTGGAAAGAATAGGCATGTTTCTCAATTTCCA
rJMSF003P09+          GTTTGGCTGCTCAGGGGATCATCCCTGTCTGGAAAGAATAGGCATGTTTCTCAATTTCCA
rJMFF012D12+          GTTTGGCTGCTCAGGGGATCATCCCTGTCTGGAAAGAATAGGCATGTTTCTCAATTTCCA
rJMFF008B18+          GTTTGGCTGCTCAGGGGATCATCCCTGTCTGGAAAGAATAGGCATGTTTCTCAATTTCCA
                      ____________________________________________________________
consensus             GTTTGGCTGCTCAGGGGATCATCCCTGTCTGGAAAGAATAGGCATGTTTCTCAATTTCCA
 
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rJMSF017P05+          TTCAACACATGTAAAATCACCACACACCATATTTTCTCTTCTGTA-CTGTATCCCTTTGC
rJMFF030G09+          TTCAACACATGTAAAATCACCACACACCATATTTTCTCTTCTGTA-CTGTATCCCTTTGC
rJMSF003P09+          TTCAACACATGTAAAATCACCACACACCATATTTTCTCTTCTGTATCTGTATCCCTTNGC
rJMFF012D12+          TTCAACACATGTAAAATCACCACACACCATATTTTCTCTTCTGTA-CTGTATCCCTTTGC
rJMFF008B18+          TTCAACACATGTAAAATCACCACACACCATATTTTCTCTTCTGTA-CTGTATCCCTTTGC
                      ____________________________________________________________
consensus             TTCAACACATGTAAAATCACCACACACCATATTTTCTCTTCTGTA-CTGTATCCCTTTGC
 
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rJMSF017P05+          AGTTGCAGAAACAGAGAATAACAAATTCCCAAATCACAAAGTTGTATGTACTTCCCCACT
rJMFF030G09+          AGTTGCAGAAACAGAGAATAACAAATTCCCAAATCACAAAGTTGTATGTACTTCCCCACT
rJMSF003P09+          AGTTGCAGAAACAGAGAATAACAAATTCCCAAATCACAAAGTTGTATGTACTTCCCCACT
rJMFF012D12+          AGTTGCAGAAACAGAGAATAACAAATTCCCAAATCACAAAGTTGTATGTACTTCCCCACT
rJMFF008B18+          AGTTGCAGAAACAGAGAATAACAAATTCCCAAATCACAAAGTTGTATGTACTTCCCCACT
                      ____________________________________________________________
consensus             AGTTGCAGAAACAGAGAATAACAAATTCCCAAATCACAAAGTTGTATGTACTTCCCCACT
 
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rJMSF017P05+          TCTATGTAATCAATTCAAGACCTCAC                                  
rJMFF030G09+          TCTATGTAATCAATTCAAGACCTCACATACAATCATCAGAATATGGAAAATACTA     
rJMSF003P09+          TCTATGTAATCAATTCAAGACCTCACATACAATCATCAGAAT                  
rJMFF012D12+          TCTATGTAATCAATTCAAGACCTCACATACAATCATCAGAATATNGAAAATACTA     
rJMFF008B18+          TCTATGTAATCAATTCAAGACCTCACATACAATCATCAGAATATGGAAAATACTATAATA
                      ____________________________________________________________
consensus             TCTATGTAATCAATTCAAGACCTCACATACAATCATCAGAATATGGAAAATACTATAATA