| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007O22 | Sequence | 209 | 003230 (7) | 838 | 008152 (8) | ref|XP_008245916.1| | 3e-122 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume] | |||
| JMFF025M18 | Sequence | 572 | 003230 (7) | ref|XP_009616625.1| | 4e-70 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom | 734 | 008152 (8) | ref|XP_008245916.1| | 3e-118 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume] |
| JMFF035D06 | Sequence | 538 | 003230 (7) | ref|XP_009616625.1| | 5e-71 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom | 659 | 008152 (8) | ref|XP_011081701.1| | 4e-95 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum] |
| JMFF036E11 | Sequence | 557 | 003230 (7) | ref|XP_009780253.1| | 9e-77 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl | 536 | 008152 (8) | ref|XP_011081701.1| | 4e-95 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum] |
| JMFF039E06 | Sequence | 603 | 003230 (7) | ref|XP_009616625.1| | 2e-78 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom | 691 | 008152 (8) | ref|XP_011081701.1| | 7e-107 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum] |
| JMFF043C23 | Sequence | 643 | 003230 (7) | ref|XP_009780253.1| | 1e-97 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl | 518 | 008152 (8) | ref|XP_007012245.1| | 1e-61 | Serine hydroxymethyltransferase 3 isoform 2, partial [Theobroma cacao] gb|EOY29 |
| JMSF001L23 | Sequence | 281 | 003230 (7) | ref|XP_009780253.1| | 9e-15 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl | 712 | 008152 (8) | ref|XP_008245916.1| | 8e-110 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume] |
| JMSF003J18 | Sequence | 524 | 008152 (8) | ref|XP_009591252.1| | 5e-32 | PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF001L23+ TCTAGAAACTGCCATTAA
rJMFF025M18+ CGGAGTTGATCTAGAAACTGCCATTAA
rJMFF007O22+ GCGGTATGATATTTTCAAGAAGGATCCTGTTTTCGGAGTTGATCTAGAANCTGCCATTAA
____________________________________________________________
consensus GCGGTATGATATTTTCAAGAAGGATCCTGTTTTCGGAGTTGATCTAGAAACTGCCATTAA
. : . : . : . : . : . :
rJMSF001L23+ TAATGCTG-TTTTCCTGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
rJMFF039E06+ TGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
rJMFF036E11+ TAGC
rJMFF025M18+ TAATGCTGTTTTTCCTGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
rJMFF007O22+ TAATGCTGTTTTTCCTGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
____________________________________________________________
consensus TAATGCTGTTTTTCCTGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
. : . : . : . : . : . :
rJMSF001L23+ CGTCTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF039E06+ CGTCTGCCTGAAGTATGCAAAGTCACGTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF035D06+ CTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF036E11+ CGTCTGCNTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF025M18+ CGTCTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF007O22+ CGTCTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
____________________________________________________________
consensus CGTCTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
. : . : . : . : . : . :
rJMSF001L23+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF039E06+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF035D06+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF036E11+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF025M18+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF007O22+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
____________________________________________________________
consensus CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
. : . : . : . : . : . :
rJMSF001L23+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMFF039E06+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMFF035D06+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMFF036E11+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGNTAGAGT
rJMFF025M18+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMFF043C23+ TGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMSF003J18+ ACCCATGGGTATNGATGGTGNTAGAGT
rJMFF007O22+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
____________________________________________________________
consensus AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
. : . : . : . : . : . :
rJMSF001L23+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF039E06+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF035D06+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF036E11+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF025M18+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF043C23+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMSF003J18+ GGAGAAAATCCTNGACANGGCATCGATCACACTCAATAAGANTTCNGTACCCGGNGATAA
rJMFF007O22+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
____________________________________________________________
consensus GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
. : . : . : . : . : . :
rJMSF001L23+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF039E06+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF035D06+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF036E11+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF025M18+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF043C23+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMSF003J18+ AAGTGCGCTNGTCCCTGGTGGCATCNGTATCGGGGCACCANCCATGACCACCAGAGGTTT
rJMFF007O22+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
____________________________________________________________
consensus AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
. : . : . : . : . : . :
rJMSF001L23+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF039E06+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF035D06+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF036E11+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF025M18+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF043C23+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMSF003J18+ CACCGAGAATGAATTCATGGCAGTCGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF007O22+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
____________________________________________________________
consensus CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
. : . : . : . : . : . :
rJMSF001L23+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF039E06+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF035D06+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF036E11+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF025M18+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF043C23+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMSF003J18+ CCGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCANGATTTCATGNAATTTGTTANGT
rJMFF007O22+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
____________________________________________________________
consensus -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
. : . : . : . : . : . :
rJMSF001L23+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMFF039E06+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMFF035D06+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMFF036E11+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTNGAAGNTGTG
rJMFF025M18+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMFF043C23+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMSF003J18+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGTGCTGCGCACAAGAGTTGAAGCTGTG
rJMFF007O22+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
____________________________________________________________
consensus ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
. : . : . : . : . : . :
rJMSF001L23+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF039E06+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF035D06+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF036E11+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAANGCAANACACAAA
rJMFF025M18+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF043C23+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMSF003J18+ ACAACACNGTACCCATNGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF007O22+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
____________________________________________________________
consensus ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
. : . : . : . : . : . :
rJMSF001L23+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMFF039E06+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMFF035D06+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMFF025M18+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMFF043C23+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMSF003J18+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAANTGAGTTGAGAAAGAT
rJMFF007O22+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
____________________________________________________________
consensus TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
. : . : . : . : . : . :
rJMSF001L23+ GCACAGTTTTGAACATTCTGATTTCTGAATT
rJMFF039E06+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATA
rJMFF035D06+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATA
rJMFF025M18+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATAT
rJMFF043C23+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATATATGATAAAGCT
rJMSF003J18+ GCACAGTTTTGAACATTNTGATTTCTGAATTTGGAACTNCATATCATATATGATAAAGCN
rJMFF007O22+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATATATGATAAAGCT
____________________________________________________________
consensus GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATATATGATAAAGCT
. : . : . : . : . : . :
rJMFF043C23+ TGAGAA
rJMSF003J18+ TGAGAA
rJMFF007O22+ TGAGAAACCAATATCTATGCTTTATACCTTTTGCTTCAATTATTATATTATAGTCATTTC
____________________________________________________________
consensus TGAGAAACCAATATCTATGCTTTATACCTTTTGCTTCAATTATTATATTATAGTCATTTC