clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF006I13 | Sequence | 526 | 008151 (6) | ref|XP_009765884.1| | 1e-49 | PREDICTED: serine/arginine-rich splicing factor RSZ22A-like [Nicotiana sylvestr | 740 | 008151 (6) | ref|XP_006357055.1| | 3e-26 | PREDICTED: serine/arginine-rich splicing factor RSZ22-like isoform X1 [Solanum |
JMFF007L13 | Sequence | 415 | 008151 (6) | ref|XP_009765884.1| | 9e-53 | PREDICTED: serine/arginine-rich splicing factor RSZ22A-like [Nicotiana sylvestr | 739 | 008151 (6) | ref|XP_006357055.1| | 4e-20 | PREDICTED: serine/arginine-rich splicing factor RSZ22-like isoform X1 [Solanum |
JMSF041I13 | Sequence | 849 | 008151 (6) | ref|XP_009765884.1| | 6e-52 | PREDICTED: serine/arginine-rich splicing factor RSZ22A-like [Nicotiana sylvestr | 590 | 008151 (6) | ref|XP_009353338.1| | 5e-04 | PREDICTED: serine/arginine-rich splicing factor RSZ22-like isoform X2 [Pyrus x |
This contig is upended
. : . : . : . : . : . :
JMFF006I13- ATACATCCTCTCTGCGGTGGGCTAGGGTTT
JMFF007L13- ATACATCCTCTCTGCGGTGGGCTAGGGTTT
JMSF041I13- GGTCTCTCTCTCTTCATACATCCTCTCTGCGGTGGGCTAGGGTTT
____________________________________________________________
consensus GGTCTCTCTCTCTTCATACATCCTCTCTGCGGTGGGCTAGGGTTT
. : . : . : . : . : . :
JMFF006I13- TGCGTTCAAATCTAGGGTTTCAGGTGTTTATTCGTGATGTCAAGAGTATATGTTGGAAAT
JMFF007L13- TGCGTTCAAATCTAGGGTTTCAGGTGTTTATTCGTGATGTCAAGAGTATATGTTGGAAAT
JMSF041I13- TGCGTTCAAATCTAGGGTTTCAGGTGTTTATTCGTGATGTCAAGAGTATATGTTGGAAAT
____________________________________________________________
consensus TGCGTTCAAATCTAGGGTTTCAGGTGTTTATTCGTGATGTCAAGAGTATATGTTGGAAAT
. : . : . : . : . : . :
JMFF006I13- TTGGACCCTAGGGTCACTGTACGAGATCTTGAAGATGAGTTCCGTACCTTTGGAGTGATA
JMFF007L13- TTGGACCCTAGGGTCACTGAACGAGATCTTGAAGATGAGTTCCGTACCTTTGGAGTGATA
JMSF041I13- TTGGACCCTAGGGTCACTGAACGAGATCTTGAAGATGAGTTCCGTACCTTTGGAGTGATA
____________________________________________________________
consensus TTGGACCCTAGGGTCACTGAACGAGATCTTGAAGATGAGTTCCGTACCTTTGGAGTGATA
. : . : . : . : . : . :
JMFF006I13- AGAAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATCGATTTTGATGACCGA
JMFF007L13- AGAAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATCGATTTTGATGACCGA
JMSF041I13- AGAAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATCGATTTTGATGACCGA
rJMFF006I13+ GCAAGAAGGCCACCTGGTTATGCTTTTATCGATTTTGATGACCGA
rJMFF007L13+ TTATCGATTTTGATGACCGA
____________________________________________________________
consensus AGAAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATCGATTTTGATGACCGA
. : . : . : . : . : . :
JMFF006I13- AGAGATGCACAGGATGCAATCCGGGAATTGGATGGTAAGAATGGTTGGAGAGTTGAACTC
JMFF007L13- AGAGATGCACAGGATGCAATCCGGGAATTGGATGGTAAGAATGGTTGGAGAGTTGAACTC
JMSF041I13- AGAGATGCACAGGATGCAATCCGGGAATTGGATGGTAAGAATGGTTGGAGAGTTGAACTC
rJMFF006I13+ AGAGATGCACAGGATGCAATCCGGGAATTGGATGGTAAGAATGGTTGGAGAGTTGAACTC
rJMSF041I13+ TGAACTC
rJMFF007L13+ AGAGATGCACAGGATGCAATCCGGGAATTGGATGGTAAGAATGGTTGGAGAGTTGAACTC
____________________________________________________________
consensus AGAGATGCACAGGATGCAATCCGGGAATTGGATGGTAAGAATGGTTGGAGAGTTGAACTC
. : . : . : . : . : . :
JMFF006I13- TCTCACAATTCCANAGGTGGAGGTGGGGGACGTGGCGGTGGAGGAGGACGTGGTCGCTCT
JMFF007L13- TCTCACAATTCCAGAGGTGGAGGTGGGGGACGTGGCGGTGGAGGAGGACGTGGTCGCTCT
JMSF041I13- TCTCACAATTCCAGAGGTGGAGGTGGGGGACGTGGCGGTGGAGGAGGACGTGGTCGCTCT
rJMFF006I13+ TCTCACAATTCCAGAGGTGGAGGTGGGGGACGTGGCGGTGGAGGAGGACGTGGTCGCTCT
rJMSF041I13+ TCTCACAATTCCAGAGGTGGAGGTGGGGGACGTGGCGGTGGAGGAGGACGTGGTCGCTCT
rJMFF007L13+ TCTCACAATTCCAGAGGTGGAGGTGGGGGACGTGGCGGTGGAGGAGGACGTGGTCGCTCT
____________________________________________________________
consensus TCTCACAATTCCAGAGGTGGAGGTGGGGGACGTGGCGGTGGAGGAGGACGTGGTCGCTCT
. : . : . : . : . : . :
JMFF006I13- GGTGGTTCTGACTTGAAGTGCTATGAATGTGGCGAAGCTGGTCATTTTGCACGTGAGTGC
JMFF007L13- GGTGGTTCTGACTTGAAGTGCTATGAATGTGGCGAANCTGGTCATTTTGCACGTGAGTGC
JMSF041I13- GGTGGTTCTGACTTGAAGTGCTATGAATGTGGCGAAGCTGGTCATTTTGCACGTGAGTGC
rJMFF006I13+ GGTGGTTCTGACTTGAAGTGCTATGAATGTGGCGAAGCTGGTCATTTTGCACGTGAGTGC
rJMSF041I13+ GGTGGTTCTGACTTGAAGTGCTATGAATGTGGCGAAGCTGGTCATTTTGCACGTGAGTGC
rJMFF007L13+ GGTGGTTCTGACTTGAAGTGCTATGAATGTGGCGAAGCTGGTCATTTTGCACGTGAGTGC
____________________________________________________________
consensus GGTGGTTCTGACTTGAAGTGCTATGAATGTGGCGAAGCTGGTCATTTTGCACGTGAGTGC
. : . : . : . : . : . :
JMFF006I13- CGGCTCCGCGGGGGTGGGGGTGCAGGAAGGCGTCNCANTCGCAGCCCACCTANATATAGG
JMFF007L13- CGGCTCCGCGG
JMSF041I13- CGGCTCCGCGGGGGTGGGGGTGCAGGAAGGCGTCGCAGTCGCAGCCCACCTAGATATAGG
rJMFF006I13+ CGGCTCCGCGGGGGTGGGGGTGCAGGAAGGCGTCGCAGTCGCAGCCCACCTAGATATAGG
rJMSF041I13+ CGGCTCCGCGGGGGTGGGGGTGCAGGAAGGCGTCGCAGTCGCAGCCCACCTAGATATAGG
rJMFF007L13+ CGGCTCCGCGGGGGTGGGGGTGCAGGAAGGCGTCGCAGTCGCAGCCCACCTAGATATAGG
____________________________________________________________
consensus CGGCTCCGCGGGGGTGGGGGTGCAGGAAGGCGTCGCAGTCGCAGCCCACCTAGATATAGG
. : . : . : . : . : . :
JMFF006I13- AGGAGCCCAAGTTATGGTCGAAGGAGTTACAGTCCTCGTGGTCGTTCCCCTCGTCGCCGC
JMSF041I13- AGGAGCCCAAGTTATGGTCGAAGGAGTTACAGTCCTCGTGGTCGTTCCCCTCGTCGCCGC
rJMFF006I13+ AGGAGCCCAAGTTATGGTCGAAGGAGTTACAGTCCTCGTGGTCGTTCCCCTCGTCGCCGC
rJMSF041I13+ AGGAGCCCAAGTTATGGTCGAAGGAGTTACAGTCCTCGTGGTCGTTCCCCTCGTCGCCGC
rJMFF007L13+ AGGAGCCCAAGTTATGGTCGAAGGAGTTACAGTCCTCGTGGTCGTTCCCCTCGTCGCCGC
____________________________________________________________
consensus AGGAGCCCAAGTTATGGTCGAAGGAGTTACAGTCCTCGTGGTCGTTCCCCTCGTCGCCGC
. : . : . : . : . : . :
JMFF006I13- AGTGTGTCTCCTCGTG
JMSF041I13- AGTGTGTCTCCTCGTGGCCGTAGCTACAGCCGATCTCCTTACCGTGGACGGGATGAAGCT
rJMFF006I13+ AGTGTGTCTCCTCGTGGCCGTAGCTACAGCCGATCTCCTTACCGTGGACGGGATGAAGCT
rJMSF041I13+ AGTGTGTCTCCTCGTGGCCGTAGCTACAGCCGATCTCCTTACCGTGGACGGGATGAAGCT
rJMFF007L13+ AGTGTGTCTCCTCGTGGCCGTAGCTACAGCCGATCTCCTTACCGTGGACGGGATGAAGCT
____________________________________________________________
consensus AGTGTGTCTCCTCGTGGCCGTAGCTACAGCCGATCTCCTTACCGTGGACGGGATGAAGCT
. : . : . : . : . : . :
JMSF041I13- GCTTATGCTAACGGAAATGGTCTCAGGGAACGACACAGAAGCAGGAGCTGAAGCAATGGA
rJMFF006I13+ GCTTATGCTAACGGAAATGGTCTCAGGGAACGACACAGAAGCAGGAGCTGAAGCAATGGA
rJMSF041I13+ GCTTATGCTAACGGAAATGGTCTCAGGGAACGACACAGAAGCAGGAGCTGAAGCAATGGA
rJMFF007L13+ GCTTATGCTAACGGAAATGGTCTCAGGGAACGACACAGAAGCAGGAGCTGAAGCAATGGA
____________________________________________________________
consensus GCTTATGCTAACGGAAATGGTCTCAGGGAACGACACAGAAGCAGGAGCTGAAGCAATGGA
. : . : . : . : . : . :
JMSF041I13- ATATTGTTTCCAGATGCATTACCAAACATTTGGAATTGTGTTTTTACTTAGCTTGAACTA
rJMFF006I13+ ATATTGTTTCCAGATGCATTACCAAACATTTGGAATTGTGTTTTTACTTAGCTTGAACTA
rJMSF041I13+ ATATTGTTTCCAGATGCATTACCAAACATTTGGAATTGTGTTTTTACTTAGCTTGAACTA
rJMFF007L13+ ATATTGTTTCCAGATGCATTACCAAACATTTGGAATTGTGTTTTTACTTAGCTTGAACTA
____________________________________________________________
consensus ATATTGTTTCCAGATGCATTACCAAACATTTGGAATTGTGTTTTTACTTAGCTTGAACTA
. : . : . : . : . : . :
JMSF041I13- GATCACAACTATGTAAGTGGGGCCACCATTTTGCTTCAACTGCTGGATTTGGTTAAGTTT
rJMFF006I13+ GATCACAACTATGTAAGTGGGGCCACCATTTTGCTTCAACTGCTGGATTTGGTTAAGTTT
rJMSF041I13+ GATCACAACTATGTAAGTGGGGCCACCATTTTGCTTCAACTGCTGGATTTGGTTAAGTTT
rJMFF007L13+ GATCACAACTATGTAAGTGGGGCCACCATTTTGCTTCAACTGCTGGATTTGGTTAAGTTT
____________________________________________________________
consensus GATCACAACTATGTAAGTGGGGCCACCATTTTGCTTCAACTGCTGGATTTGGTTAAGTTT
. : . : . : . : . : . :
JMSF041I13- TCCTTTCTTTTGATACTAAGTGTATTGGCTTCATAGTATATGTTCCTTGCTGAACTTANT
rJMFF006I13+ TCCTTTCTTTTGATACTAAGTGTATTGGCTTCATAGTATATGTTCCTTGCTGAACTTAGT
rJMSF041I13+ TCCTTTCTTTTGATACTAAGTGTATTGGCTTCATAGTATATGTTCCTTGCTGAACTTAGT
rJMFF007L13+ TCCTTTCTTTTGATACTAAGTGTATTGGCTTCATAGTATATGTTCCTTGCTGAACTTAGT
____________________________________________________________
consensus TCCTTTCTTTTGATACTAAGTGTATTGGCTTCATAGTATATGTTCCTTGCTGAACTTAGT
. : . : . : . : . : . :
JMSF041I13- A-TCTAGTTACTGTTGCTTTGAATT
rJMFF006I13+ A-TCTAGTTACTGTTGCTTTGAATTTTATAGACGATTGGATCTATGGTAGGTAATATTTT
rJMSF041I13+ ATTCTAGTTACTGTTGCTTTGAATTT
rJMFF007L13+ A-TCTAGTTACTGTTGCTTTGAATTTTATAGACGATTGGATCTATGGTAGGTAATATTTT
____________________________________________________________
consensus A-TCTAGTTACTGTTGCTTTGAATTTTATAGACGATTGGATCTATGGTAGGTAATATTTT
. : . : . : . : . : . :
rJMFF006I13+ ATTGAGAAGAATATATCTCTAAAGACACTGCTAAAT
rJMFF007L13+ ATTGAGAAGAATATATCTCTAAAGACACTGCTAAATGTTTTTCTGTTTTTGTGCCGAGGT
____________________________________________________________
consensus ATTGAGAAGAATATATCTCTAAAGACACTGCTAAATGTTTTTCTGTTTTTGTGCCGAGGT