Contig 008149:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007K08Sequence408008149 (2)ref|XP_009801860.1|3e-58PREDICTED: transmembrane emp24 domain-containing protein p24delta3-like [Nicoti792008149 (2)ref|XP_009801860.1|2e-83PREDICTED: transmembrane emp24 domain-containing protein p24delta3-like [Nicoti

Alignment

This contig is upended


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JMFF007K08-                                                                      A
                      ____________________________________________________________
consensus                                                                        A
 
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JMFF007K08-           TAAACATCTACTGTATATACAGTGAGATTCCGGGAAGGAAATGATGGTGGAAAATGCTGC
rJMFF007K08+                                                          GGAAAATGCTGC
                      ____________________________________________________________
consensus             TAAACATCTACTGTATATACAGTGAGATTCCGGGAAGGAAATGATGGTGGAAAATGCTGC
 
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JMFF007K08-           GAGCCTGCGCGGATGGGCGATGTGGGCACTGCCATTGATGACGTTGTCTTTGTGGTTAGA
rJMFF007K08+          GAGCNTGCGCGGATGGGCGATGTGGGCACTGCCATTGATGACGTTGTCTTTGTGGTTAGA
                      ____________________________________________________________
consensus             GAGCCTGCGCGGATGGGCGATGTGGGCACTGCCATTGATGACGTTGTCTTTGTGGTTAGA
 
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JMFF007K08-           GATGGGAGAGGCCATATGGTTAAATCTGCCCGGGAGCGGCACCAAATGCGTGTCGGAGGA
rJMFF007K08+          GATGGGAGAGGCCATATGGTTAAATCTGCCCGGGAGCGGCACCAAATGCGTGTCGGAGGA
                      ____________________________________________________________
consensus             GATGGGAGAGGCCATATGGTTAAATCTGCCCGGGAGCGGCACCAAATGCGTGTCGGAGGA
 
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JMFF007K08-           AATTCACAACAACGTCGTCGTCTTGGCCGACTACGTCGTCATTTCCGACGATCATGTCCA
rJMFF007K08+          AATTCACAACAACGTCGTCGTCTTGGCCGACTACGTCGTCATTTCCGACGATCATGTCCA
                      ____________________________________________________________
consensus             AATTCACAACAACGTCGTCGTCTTGGCCGACTACGTCGTCATTTCCGACGATCATGTCCA
 
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JMFF007K08-           CCCCACTCCCACCATCTCCGTCAAGGTAACGTCGCCATATGGAAACACCCTTCATTCAAA
rJMFF007K08+          CCCCACTCCCACCATCTCCGTCAAGGTAACGTCGCCATATGGAAACACCCTTCATTCAAA
                      ____________________________________________________________
consensus             CCCCACTCCCACCATCTCCGTCAAGGTAACGTCGCCATATGGAAACACCCTTCATTCAAA
 
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JMFF007K08-           TGAGAATGTGACACACGGCCAGTTTGCCTTCACAACTACTGAGGCCGGCAACTATCTAGC
rJMFF007K08+          TGAGAATGTGACACACGGCCAGTTTGCCTTCACAACTACTGAGGCCGGCAACTATCTAGC
                      ____________________________________________________________
consensus             TGAGAATGTGACACACGGCCAGTTTGCCTTCACAACTACTGAGGCCGGCAACTATCTAGC
 
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JMFF007K08-           TTGTTTCTGGGTTGATGGTCATAACCCTGGTGGTGGGGGGTTTAAGT             
rJMFF007K08+          TTGTTTCTGGGTTGATGGTCATAACCCTGGTGGTGGGGGGTTTAAGTGTTAACCTCGATT
                      ____________________________________________________________
consensus             TTGTTTCTGGGTTGATGGTCATAACCCTGGTGGTGGGGGGTTTAAGTGTTAACCTCGATT
 
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rJMFF007K08+          GGAAAACTGGAATTGCTGCAAAAGACTGGGAGTCAGTTGCAAGAAAGGAGAAAATAGAAG
                      ____________________________________________________________
consensus             GGAAAACTGGAATTGCTGCAAAAGACTGGGAGTCAGTTGCAAGAAAGGAGAAAATAGAAG
 
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rJMFF007K08+          GCATTGAGCTTGAGTTAAGAAAGCTTGAAGGTGCAGTCGAGGCCATCCATGAAAATCTAC
                      ____________________________________________________________
consensus             GCATTGAGCTTGAGTTAAGAAAGCTTGAAGGTGCAGTCGAGGCCATCCATGAAAATCTAC
 
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rJMFF007K08+          TATACTTAAAGACCAGAGAAGCAGAGATGCGGACAGTGAGCGAAACAACAAATTCTCGAG
                      ____________________________________________________________
consensus             TATACTTAAAGACCAGAGAAGCAGAGATGCGGACAGTGAGCGAAACAACAAATTCTCGAG
 
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rJMFF007K08+          TGGCTTGGTTCAGTATCATGTCCTTGGGCGTCTGCATTGGGGTTTCGTTTCTGCAAATAT
                      ____________________________________________________________
consensus             TGGCTTGGTTCAGTATCATGTCCTTGGGCGTCTGCATTGGGGTTTCGTTTCTGCAAATAT
 
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rJMFF007K08+          TGCATTTGAAGCAATTTTTCCAAAAGAAGAAGCTGATTTAGTCTGGCTTTTGCTAATCGT
                      ____________________________________________________________
consensus             TGCATTTGAAGCAATTTTTCCAAAAGAAGAAGCTGATTTAGTCTGGCTTTTGCTAATCGT
 
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rJMFF007K08+          GTTTGTTAGGGCTCTTTCTTCTTTCGATTTTGTCACTTTCCTCGGAGGATTAAAATTTTG
                      ____________________________________________________________
consensus             GTTTGTTAGGGCTCTTTCTTCTTTCGATTTTGTCACTTTCCTCGGAGGATTAAAATTTTG
 
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rJMFF007K08+          ATCTAACAGAAGCTTTGTTCAGCTTCTTCTGTATGTGATAATGAAGCACGTAAAGATGAG
                      ____________________________________________________________
consensus             ATCTAACAGAAGCTTTGTTCAGCTTCTTCTGTATGTGATAATGAAGCACGTAAAGATGAG