Contig 008148:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007J07Sequence128008148 (5)
JMFF038D16Sequence463008148 (5)ref|XP_008371544.1|3e-56PREDICTED: 60S ribosomal protein L44-like [Malus domestica]537008148 (5)ref|XP_009353507.1|2e-30PREDICTED: 60S ribosomal protein L44-like, partial [Pyrus x bretschneideri]
JMFN039H20Sequence515008148 (5)ref|XP_009353507.1|1e-55PREDICTED: 60S ribosomal protein L44-like, partial [Pyrus x bretschneideri]
JMSF024H08Sequence652000897 (7)ref|XP_009600023.1|8e-19PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor495008148 (5)ref|XP_008371544.1|8e-50PREDICTED: 60S ribosomal protein L44-like [Malus domestica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN039H20- TGAACTGCATAAGCTTTCCC
                      ____________________________________________________________
consensus TGAACTGCATAAGCTTTCCC
 
. : . : . : . : . : . :
rJMFF038D16+ TCAACCATGGNGAACGTTCCAAAGNCCAAGAAGACATACTGC
JMFN039H20- TACTCTGACCTCTTGCCGTCAACCATGGTGAACGTTCCAAAGACCAAGAAGACATACTGC
JMFF038D16- ACCATGGTGAACGTTCCNAAGACCAAGAAGACATACTGC
rJMSF024H08+ CCTCTTGCCGTCAACCATGGTGAACGTTCCAAAGACCAAGAAGACATACTGC
                      ____________________________________________________________
consensus TACTCTGACCTCTTGCCGTCAACCATGGTGAACGTTCCAAAGACCAAGAAGACATACTGC
 
. : . : . : . : . : . :
rJMFF038D16+ AAGTNCAAGGAGTGCNAGAAGCACNCCTTGCATNAGGTTACTCAGTNCAAAAAAGGAAAG
JMFN039H20- AAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTTACTCAGTACAAAAAAGGAAAG
JMFF038D16- AAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTTACTCAGTACAAAAAAGGAAAG
rJMSF024H08+ AAGTCCAAGGAGTGCAAGAAGCNCNCCTTGCATAAGGTTACTCAGTACAAAAAAGGAAAG
                      ____________________________________________________________
consensus AAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTTACTCAGTACAAAAAAGGAAAG
 
. : . : . : . : . : . :
rJMFF038D16+ GATAGTNTTGNTGCTCAAGGAAAGNGTCGTTATGATCGCAAGCAATNTGGTTATGGTGGN
JMFN039H20- GATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGTGGA
JMFF038D16- GATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGTGGA
rJMSF024H08+ GATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGTGGA
                      ____________________________________________________________
consensus GATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGTGGA
 
. : . : . : . : . : . :
rJMFF038D16+ CAGNCCAAGCCTGTTTTCCACAAAAAGGCCAAGNCCACAAAGAAGNTTGTNTTGAGATTG
JMFN039H20- CAGACCAAGCCTGTCTTCCACAAAAAGGCCAAGACCACAAAGAAGATTGTCTTGAGATTG
JMFF038D16- CAGACCAAGCCTGTCTTCCACAAAAAGGCCAAGACCACAAAGAAGATTGTCTTGAGATTG
rJMSF024H08+ CAGACCAAGCCTGTNTTCCACAAAAAGGCCAAGACCNCAAAGAAGATTGTCTTGAGATTG
                      ____________________________________________________________
consensus CAGACCAAGCCTGTCTTCCACAAAAAGGCCAAGACCACAAAGAAGATTGTCTTGAGATTG
 
. : . : . : . : . : . :
rJMFF038D16+ CAATNCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
JMFN039H20- CAATGCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
JMFF038D16- CAATGCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
rJMSF024H08+ CAATGCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
                      ____________________________________________________________
consensus CAATGCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
 
. : . : . : . : . : . :
rJMFF038D16+ ATTGGTGGNGACAAGAAGGGGAAGGGAAC
JMFN039H20- ATTGGTGGAGACAAGAAGGGGAAGGGAAC
JMFF038D16- ATTGGTGGAGACAAGAAGGGGAAGGGAACATCTCTCTTTTAAATTGCAAGTTTTGGGAAA
rJMSF024H08+ ATTGGTGGAGACAAGAAGGGGAAGGGAACATCTNTNTTTTAAATTGCAAGTTTTGGGAAA
                      ____________________________________________________________
consensus ATTGGTGGAGACAAGAAGGGGAAGGGAACATCTCTCTTTTAAATTGCAAGTTTTGGGAAA
 
. : . : . : . : . : . :
JMFF038D16- TCAGATGTTTTTTTTTTCCCCTTTGNGCTATGTCATCATGGTTGTTTAAGTCAAACAATT
rJMSF024H08+ TCAGATGTTTTTTTTTTCCCCTTTGTGCTATGTCATCATGGTTGTTTAAGTCAAACAATT
rJMFF007J07+ TTTTATTTCCCCNTTGTGNTATGTCANCATGGTTGTTTAAGTCAAACAATN
                      ____________________________________________________________
consensus TCAGATGTTTTTTTTTTCCCCTTTGTGCTATGTCATCATGGTTGTTTAAGTCAAACAATT
 
. : . : . : . : . : . :
JMFF038D16- TA
rJMSF024H08+ TAGCTTTGCAGATTTTGTTGGTTCCATTGTAATGGTCAGAGTTTTGTAGTTGACGTT
rJMFF007J07+ TAGCTTNGCAGATTTTGNNGGTTCCATGGTAATGGTCAGAGNATAGTAGTTGACGTTTAT
                      ____________________________________________________________
consensus TAGCTTTGCAGATTTTGTTGGTTCCATTGTAATGGTCAGAGTTTTGTAGTTGACGTTTAT