Contig 008148:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007J07Sequence128008148 (5)
JMFF038D16Sequence463008148 (5)ref|XP_008371544.1|3e-56PREDICTED: 60S ribosomal protein L44-like [Malus domestica]537008148 (5)ref|XP_009353507.1|2e-30PREDICTED: 60S ribosomal protein L44-like, partial [Pyrus x bretschneideri]
JMFN039H20Sequence515008148 (5)ref|XP_009353507.1|1e-55PREDICTED: 60S ribosomal protein L44-like, partial [Pyrus x bretschneideri]
JMSF024H08Sequence652000897 (7)ref|XP_009600023.1|8e-19PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor495008148 (5)ref|XP_008371544.1|8e-50PREDICTED: 60S ribosomal protein L44-like [Malus domestica]

Alignment

This contig is upended


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JMFN039H20-                                                   TGAACTGCATAAGCTTTCCC
                      ____________________________________________________________
consensus                                                     TGAACTGCATAAGCTTTCCC
 
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rJMFF038D16+                            TCAACCATGGNGAACGTTCCAAAGNCCAAGAAGACATACTGC
JMFN039H20-           TACTCTGACCTCTTGCCGTCAACCATGGTGAACGTTCCAAAGACCAAGAAGACATACTGC
JMFF038D16-                                ACCATGGTGAACGTTCCNAAGACCAAGAAGACATACTGC
rJMSF024H08+                  CCTCTTGCCGTCAACCATGGTGAACGTTCCAAAGACCAAGAAGACATACTGC
                      ____________________________________________________________
consensus             TACTCTGACCTCTTGCCGTCAACCATGGTGAACGTTCCAAAGACCAAGAAGACATACTGC
 
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rJMFF038D16+          AAGTNCAAGGAGTGCNAGAAGCACNCCTTGCATNAGGTTACTCAGTNCAAAAAAGGAAAG
JMFN039H20-           AAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTTACTCAGTACAAAAAAGGAAAG
JMFF038D16-           AAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTTACTCAGTACAAAAAAGGAAAG
rJMSF024H08+          AAGTCCAAGGAGTGCAAGAAGCNCNCCTTGCATAAGGTTACTCAGTACAAAAAAGGAAAG
                      ____________________________________________________________
consensus             AAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTTACTCAGTACAAAAAAGGAAAG
 
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rJMFF038D16+          GATAGTNTTGNTGCTCAAGGAAAGNGTCGTTATGATCGCAAGCAATNTGGTTATGGTGGN
JMFN039H20-           GATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGTGGA
JMFF038D16-           GATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGTGGA
rJMSF024H08+          GATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGTGGA
                      ____________________________________________________________
consensus             GATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGTGGA
 
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rJMFF038D16+          CAGNCCAAGCCTGTTTTCCACAAAAAGGCCAAGNCCACAAAGAAGNTTGTNTTGAGATTG
JMFN039H20-           CAGACCAAGCCTGTCTTCCACAAAAAGGCCAAGACCACAAAGAAGATTGTCTTGAGATTG
JMFF038D16-           CAGACCAAGCCTGTCTTCCACAAAAAGGCCAAGACCACAAAGAAGATTGTCTTGAGATTG
rJMSF024H08+          CAGACCAAGCCTGTNTTCCACAAAAAGGCCAAGACCNCAAAGAAGATTGTCTTGAGATTG
                      ____________________________________________________________
consensus             CAGACCAAGCCTGTCTTCCACAAAAAGGCCAAGACCACAAAGAAGATTGTCTTGAGATTG
 
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rJMFF038D16+          CAATNCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
JMFN039H20-           CAATGCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
JMFF038D16-           CAATGCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
rJMSF024H08+          CAATGCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
                      ____________________________________________________________
consensus             CAATGCCAGGGATGCAAGCATGTTTCACAACATGCAATCAAGCGTTGCAAGCATTTTGAG
 
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rJMFF038D16+          ATTGGTGGNGACAAGAAGGGGAAGGGAAC                               
JMFN039H20-           ATTGGTGGAGACAAGAAGGGGAAGGGAAC                               
JMFF038D16-           ATTGGTGGAGACAAGAAGGGGAAGGGAACATCTCTCTTTTAAATTGCAAGTTTTGGGAAA
rJMSF024H08+          ATTGGTGGAGACAAGAAGGGGAAGGGAACATCTNTNTTTTAAATTGCAAGTTTTGGGAAA
                      ____________________________________________________________
consensus             ATTGGTGGAGACAAGAAGGGGAAGGGAACATCTCTCTTTTAAATTGCAAGTTTTGGGAAA
 
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JMFF038D16-           TCAGATGTTTTTTTTTTCCCCTTTGNGCTATGTCATCATGGTTGTTTAAGTCAAACAATT
rJMSF024H08+          TCAGATGTTTTTTTTTTCCCCTTTGTGCTATGTCATCATGGTTGTTTAAGTCAAACAATT
rJMFF007J07+                   TTTTATTTCCCCNTTGTGNTATGTCANCATGGTTGTTTAAGTCAAACAATN
                      ____________________________________________________________
consensus             TCAGATGTTTTTTTTTTCCCCTTTGTGCTATGTCATCATGGTTGTTTAAGTCAAACAATT
 
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JMFF038D16-           TA                                                          
rJMSF024H08+          TAGCTTTGCAGATTTTGTTGGTTCCATTGTAATGGTCAGAGTTTTGTAGTTGACGTT   
rJMFF007J07+          TAGCTTNGCAGATTTTGNNGGTTCCATGGTAATGGTCAGAGNATAGTAGTTGACGTTTAT
                      ____________________________________________________________
consensus             TAGCTTTGCAGATTTTGTTGGTTCCATTGTAATGGTCAGAGTTTTGTAGTTGACGTTTAT