Contig 008146:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007F21Sequence471009382 (2)651008146 (2)emb|CAN70358.1|1e-39hypothetical protein VITISV_044308 [Vitis vinifera]
JMSF028B13Sequence512009382 (2)ref|XP_009607016.1|3e-09PREDICTED: polygalacturonase At1g48100 [Nicotiana tomentosiformis]633008146 (2)emb|CAN70358.1|8e-41hypothetical protein VITISV_044308 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF028B13+                    GACGTGTCCTTCCGCAACATCAAGGGCACGTACGACGTCCGGAGCCCGCC
rJMFF007F21+                   CGACGTGTCCTTCCGCAACATCAAGGGCACGTACGACGTCCGGAGCCCGCC
                      ____________________________________________________________
consensus                      CGACGTGTCCTTCCGCAACATCAAGGGCACGTACGACGTCCGGAGCCCGCC
 
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rJMSF028B13+          GATACACTTCGCCTGCAGCGACACCGTCGCCTGCACCGGGATACTCATGTCGGAAGTCGA
rJMFF007F21+          GATACACTTCGCCTGCAGCGACACCGTCGCCTGCACCGGGATACTCATGTCGGAAGTCGA
                      ____________________________________________________________
consensus             GATACACTTCGCCTGCAGCGACACCGTCGCCTGCACCGGGATACTCATGTCGGAAGTCGA
 
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rJMSF028B13+          GCTGCTCCCGTTCGAAGGCGAATTAGTCGACGACCCTTTCTGCTGGAACGCTTATGGGAT
rJMFF007F21+          GCTGCTCCCGTTCGAAGGCGAATTAGTCGACGACGCTTTCTGCTGGAACGCTTATGGGAT
                      ____________________________________________________________
consensus             GCTGCTCCCGTTCGAAGGCGAATTAGTCGACGACGCTTTCTGCTGGAACGCTTATGGGAT
 
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rJMSF028B13+          TCAGGCGACGCTCACTATACCGCCGATCGACTGCTTGCTCGACGGAATGCCCAAGTCTAT
rJMFF007F21+          TCAGGCGACGCTCACTATACCGCCGATCGACTGCTTGCTCGACGGAATGCCCAAGTCTAT
                      ____________________________________________________________
consensus             TCAGGCGACGCTCACTATACCGCCGATCGACTGCTTGCTCGACGGAATGCCCAAGTCTAT
 
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rJMSF028B13+          ATCCGAAGCAGAATATACCTGCTGACATAGTTCATACATAATAAATAAATAATATATATA
rJMFF007F21+          ATCCGAAGCAGAATATACCTGCTGACATAGTTCATACATAATAAATAAATAATATATATA
                      ____________________________________________________________
consensus             ATCCGAAGCAGAATATACCTGCTGACATAGTTCATACATAATAAATAAATAATATATATA
 
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rJMSF028B13+          TACACATATATAGACACTAGCTACTAGCTACTAGCTAGGGTCAAGTTTCTGTCCGGCCAC
rJMFF007F21+          TACACATATATAGACACTAGCTACTAGCTACTAGCTAGGGTCAAGTTTCTGTCCGGCCAC
                      ____________________________________________________________
consensus             TACACATATATAGACACTAGCTACTAGCTACTAGCTAGGGTCAAGTTTCTGTCCGGCCAC
 
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rJMSF028B13+          TCATTATTAACTAGGTATAAATACACCACAAAGTGTTTAGAAATGTACATTAGATCTGGT
rJMFF007F21+          TCATTATTAACTAGGTATAAATACACCACAAAGTGTTTAGAAATGTACATTAGATCTGGT
                      ____________________________________________________________
consensus             TCATTATTAACTAGGTATAAATACACCACAAAGTGTTTAGAAATGTACATTAGATCTGGT
 
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rJMSF028B13+          GCATTTTTTAATACTGTGTGGTGCATTTATGCATACCTGATGGTGAATCTGCACCGACAA
rJMFF007F21+          GCATTTTTTAATACTGTGTGGTGCATTTATGCATACCTGATGGTGAATCTGCACCGACAA
                      ____________________________________________________________
consensus             GCATTTTTTAATACTGTGTGGTGCATTTATGCATACCTGATGGTGAATCTGCACCGACAA
 
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rJMSF028B13+          CATGGGAAACACTGTCCGCATTTGAACTGGTATCATAGGCATAAGACAATATATGTTTAT
rJMFF007F21+          CATGGGAAACACTGTCCGCATTTGAACTGGTATCATAGGCATAAGACAATATATGTTTAT
                      ____________________________________________________________
consensus             CATGGGAAACACTGTCCGCATTTGAACTGGTATCATAGGCATAAGACAATATATGTTTAT
 
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rJMSF028B13+          GGATGATATGTAGATGGATTTTAATTTGTAGGTGTTGGGTGTTGGGTGTAGGCTCCATCC
rJMFF007F21+          GGATGATATGTAGATGGATTTTAATTTGTAGGTGTTGGGTGTTGGGTGTAGGCTCCATCC
                      ____________________________________________________________
consensus             GGATGATATGTAGATGGATTTTAATTTGTAGGTGTTGGGTGTTGGGTGTAGGCTCCATCC
 
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rJMSF028B13+          CAGTGGGATTCATTTCAATTCCCTTCTTGTGTGATGTGATCCA                 
rJMFF007F21+          CAGTGGGATTCATTTCAATTCCCTTCTTGTGTGATGTGATCCATATGAACCATATATATA
                      ____________________________________________________________
consensus             CAGTGGGATTCATTTCAATTCCCTTCTTGTGTGATGTGATCCATATGAACCATATATATA