Contig 008141:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007A18Sequence598010317 (3)emb|CAN76416.1|6e-13hypothetical protein VITISV_029037 [Vitis vinifera]791008141 (2)emb|CAN76416.1|1e-64hypothetical protein VITISV_029037 [Vitis vinifera]
JMFF035P20Sequence713008141 (2)ref|XP_011012295.1|8e-45PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]

Alignment

This contig is upended


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rJMFF007A18+                                                           GCTGGTCAAGG
                      ____________________________________________________________
consensus                                                              GCTGGTCAAGG
 
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rJMFF007A18+          CTGGCAATGTGAGGTTTGCCCAGAATATGATGTCTGTATTGCTTGTTATCAGAAGGACGG
                      ____________________________________________________________
consensus             CTGGCAATGTGAGGTTTGCCCAGAATATGATGTCTGTATTGCTTGTTATCAGAAGGACGG
 
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rJMFF007A18+          TGGAGTTGATCATCCTCATAAGTTGACTAATCATCCATCCATCGCTGCACAAAATAAAAA
                      ____________________________________________________________
consensus             TGGAGTTGATCATCCTCATAAGTTGACTAATCATCCATCCATCGCTGCACAAAATAAAAA
 
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rJMFF035P20+                                     ACAGCTTAGGAAAGTGCTTGAACTTCTGGTGCA
rJMFF007A18+          AGCTCGGCTGCGCCTGCTACGTGCTTTACAGCTTAGGAAAGTGCTTGAACTTCTGGTGCA
                      ____________________________________________________________
consensus             AGCTCGGCTGCGCCTGCTACGTGCTTTACAGCTTAGGAAAGTGCTTGAACTTCTGGTGCA
 
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rJMFF035P20+          TGCTTCACGATGCCGTACTCCTAAATGCCTGTATCCTAATTGTCGCAAGGTTAAAGGGCT
rJMFF007A18+          TGCTTCACGATGCCGTACTCCTAAATGCCTGTATCCTAATTGTCGCAAGGTTAAAGGGCT
                      ____________________________________________________________
consensus             TGCTTCACGATGCCGTACTCCTAAATGCCTGTATCCTAATTGTCGCAAGGTTAAAGGGCT
 
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rJMFF035P20+          TTTCCGACATGGGATCCAGTGCAAAAGAGGAGCTTCTGGGGGTTGTCTTCTCCGTAAGAA
rJMFF007A18+          TTTCCGACATGGGATCCAGTGCAAAAGAGGAGCTTCTGGGGGTTGTCTTCTCCGTAAGAA
                      ____________________________________________________________
consensus             TTTCCGACATGGGATCCAGTGCAAAAGAGGAGCTTCTGGGGGTTGTCTTCTCCGTAAGAA
 
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rJMFF035P20+          GATGTGGTATCTTCTTCAGCTTCATGCCCGGGCATGTCAAGAATCTGTTGGATGTCATGT
rJMFF007A18+          GATGTGGTATCTTCTTCAGCTTCATGCCCGGGCATGTCAAGAATCTGTTGGATGTCATGT
                      ____________________________________________________________
consensus             GATGTGGTATCTTCTTCAGCTTCATGCCCGGGCATGTCAAGAATCTGTTGGATGTCATGT
 
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rJMFF035P20+          TCCACGGTGCAGGGAAGTGAAAGAACATCTAAGGCGGCTACAACAACAGGCTGAATCACG
rJMFF007A18+          TCCACGGTGCAGGGAAGTGAAAGAACATCTAAGGCGGCTACAACAACAGGCTGAATCACG
                      ____________________________________________________________
consensus             TCCACGGTGCAGGGAAGTGAAAGAACATCTAAGGCGGCTACAACAACAGGCTGAATCACG
 
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rJMFF035P20+          GCGCCGGGCTGCTGTAATGGAGATGATGCGACAGAATGCTGCTGGAAATTCAGCATGATG
rJMFF007A18+          GCGCCGGGCTGCTGTAATGGAGATGATGCGACAGAATGCTGCTGGAAATTCAGCATGATG
                      ____________________________________________________________
consensus             GCGCCGGGCTGCTGTAATGGAGATGATGCGACAGAATGCTGCTGGAAATTCAGCATGATG
 
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rJMFF035P20+          AAGTTATATATAGTGCAAGTGTGAGTGAGGTACGTGGTAAGCTCTGGTAATGGAGAAAAC
rJMFF007A18+          AAGTTATATATAGTGCAAGTGTGAGTGAGGTACGTGGTAAGCTCTGGTAATGGAGAAAAC
                      ____________________________________________________________
consensus             AAGTTATATATAGTGCAAGTGTGAGTGAGGTACGTGGTAAGCTCTGGTAATGGAGAAAAC
 
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rJMFF035P20+          TGGGTGTGAAGGCTGTAGGGGCATAAGAATTTAGTTTTTGTTGTCTATCCATGGGCATGG
rJMFF007A18+          TGGGTGTGAAGGCTGTAGGGGCATAAGAATTTAGTTTTTGTTGTCTATCCATGGGCATGG
                      ____________________________________________________________
consensus             TGGGTGTGAAGGCTGTAGGGGCATAAGAATTTAGTTTTTGTTGTCTATCCATGGGCATGG
 
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rJMFF035P20+          ATATGAAACATGTCTGGTCAAAAGAAAAACAAAAAATAGGAAAAGAAAAGAAAATGGTTT
rJMFF007A18+          ATATGAAACATGTCTGGTCAAAAGAAAAACAAAAAATAGGAAAAGAAAAGAAAATGGTTT
                      ____________________________________________________________
consensus             ATATGAAACATGTCTGGTCAAAAGAAAAACAAAAAATAGGAAAAGAAAAGAAAATGGTTT
 
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rJMFF035P20+          CACTGTCCATGGATACCTTTCCTCCTCAATCTGGTTGTTTTTGTAGATGGATCCCTCATT
rJMFF007A18+          CACTGTCCATGGATACCTTTCCTCCTCAATCTGGTTGTTTTTGTAGATGGATCCCTCATT
                      ____________________________________________________________
consensus             CACTGTCCATGGATACCTTTCCTCCTCAATCTGGTTGTTTTTGTAGATGGATCCCTCATT
 
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rJMFF035P20+          CTATTTATGCTTGTTGGAAAGCAAGGTCAGAATGCATGAATCTGAATTTTACTAATAGA 
rJMFF007A18+          CTATTTATGCTTGTTGGAAAGCAAGGTCAGAATGCATGAATCTGAATTTTACTAATAGAA
                      ____________________________________________________________
consensus             CTATTTATGCTTGTTGGAAAGCAAGGTCAGAATGCATGAATCTGAATTTTACTAATAGAA