Contig 008139:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006N17Sequence553008139 (6)emb|CDP10406.1|4e-58unnamed protein product [Coffea canephora]762008139 (6)emb|CDP10406.1|3e-58unnamed protein product [Coffea canephora]
JMSF001M07Sequence186008139 (6)752008139 (6)emb|CDP10406.1|3e-58unnamed protein product [Coffea canephora]
JMSF011M04Sequence347008139 (6)emb|CDP10406.1|2e-31unnamed protein product [Coffea canephora]721008139 (6)emb|CDP10406.1|2e-58unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF001M07-             GAGAAGAAATGTTTATGAGTGACCAGAGAAGAAACTAGCCGATAGCCTTATCTATCTA
rJMSF001M07+            GAGAAGAAATGNTTATGAGTGACCAGAGAAGAAACTAGCCGATAGCCTTATCTATCTA
                      ____________________________________________________________
consensus               GAGAAGAAATGTTTATGAGTGACCAGAGAAGAAACTAGCCGATAGCCTTATCTATCTA
 
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JMSF001M07-           GTCGCAGTATCTACTAGCCAGTGGGCTATCTCTGCTGATATTTTTCGTTACTACCAACAT
rJMSF001M07+          GTCGCAGTATCTACTAGCCAGTGGGCTATCTCTGCTGATATTTTTCGTTACTACCAACAT
JMSF011M04-                               GTGGGCTATCTCTGCTGATATTTTTCGTTACTACCAACAT
rJMSF011M04+                              GTGGGCTATCTCTGCTGATATTTTTCGTTACTACCAACAT
JMFF006N17-                              AGTGTGCTATCTCTGCTGATATTTTTCGTTACTACCAACAT
rJMFF006N17+                             AGTGTGCTATCTCTGCTGATATTTTTCGTTACTACCAACAT
                      ____________________________________________________________
consensus             GTCGCAGTATCTACTAGCCAGTGGGCTATCTCTGCTGATATTTTTCGTTACTACCAACAT
 
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JMSF001M07-           CTTCTCCGACTAGCAGACCGCTCAGCAAATGGCGTCTTCTTTATGCTTTACACCTCTCGC
rJMSF001M07+          CTTCTCCGACTAGCAGACCGCTCAGCAAATGGCGTCTTCTTTATGCTTTACACCTCTCGC
JMSF011M04-           CTTCTCCGACTAGCAGACCGCTCAGCAAATGGCGTCTTCTTTATGCTTTACACCTCTCGC
rJMSF011M04+          CTTCTCCGACTAGCAGACCGCTCAGCAAATGGCGTCTTCTTTATGCTTTACACCTCTCGC
JMFF006N17-           CTTCTCCGACTAGCAGACCGCTCAGCAAATGGCGTCTTCTTTATGCTTTACACCTCTCGC
rJMFF006N17+          CTTCTCCGACTAGCAGACCGCTCAGCAAATGGCGTCTTCTTTATGCTTTACACCTCTCGC
                      ____________________________________________________________
consensus             CTTCTCCGACTAGCAGACCGCTCAGCAAATGGCGTCTTCTTTATGCTTTACACCTCTCGC
 
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JMSF001M07-           CTCCTTCA                                                    
rJMSF001M07+          CTCCTTCAAACCACTTAGCAAACCTGGGGCTGTTACTAGCACCCACGCTGGAAGAAAGAT
JMSF011M04-           CTCCTTCAAACCACTTAGCAAACCTGGGGCTGTTACTAGCACCCACGCTGGAAGAAAGAT
rJMSF011M04+          CTCCTTCAAACCACTTAGCAAACCTGGGGCTGTTACTAGCACCCACGCTGGAAGAAAGAT
JMFF006N17-           CTCCTTCAAACCACTTAGCAAACCTGGGGCTGTTACTAGCACCCACGCTGGAAGAAAGAT
rJMFF006N17+          CTCCTTCAAACCACTTAGCAAACCTGGGGCTGTTACTAGCACCCACGCTGGAAGAAAGAT
                      ____________________________________________________________
consensus             CTCCTTCAAACCACTTAGCAAACCTGGGGCTGTTACTAGCACCCACGCTGGAAGAAAGAT
 
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rJMSF001M07+          TGATTGGATCTCTGATATTACCCGCGGCTCTAGAGTTCAAACCATTAGAGGTTTGGAAGT
JMSF011M04-           TGATTGGATCTCTGATATTACCCGCGGCTCTAGAGTTCAAACCATTAGAGGTTTGGAAGT
rJMSF011M04+          TGATTGGATCTCTGATATTACCCGCGGCTCTAGAGTTCAAACCATTAGAGGTTTGGAAGT
JMFF006N17-           TGATTGGATCTCTGATATTACCCGCGGCTCTAGAGTTCAAACCATTAGAGGTTTGGAAGT
rJMFF006N17+          TGATTGGATCTCTGATATTACCCGCGGCTCTAGAGTTCAAACCATTAGAGGTTTGGAAGT
                      ____________________________________________________________
consensus             TGATTGGATCTCTGATATTACCCGCGGCTCTAGAGTTCAAACCATTAGAGGTTTGGAAGT
 
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rJMSF001M07+          GAAGGCCACAGACAATAATCAAACCACTAAAGTAAACAGCATCGTATGTGCTGATTGTGA
JMSF011M04-           GAAGGCCACAGACAATAATCAAACCACTAAAGTAAACAGCATCGTATGTGCTGATTGTGA
rJMSF011M04+          GAAGGCCACAGACAATAATCAAACCACTAAAGTAAACAGCATCGTATGTGCTGATTGTGA
JMFF006N17-           GAAGGCCACAGACAATAATCAAACCACTAAAGTAAACAGCATCGTATGTGCTGATTGTGA
rJMFF006N17+          GAAGGCCACAGACAATAATCAAACCACTAAAGTAAACAGCATCGTATGTGCTGATTGTGA
                      ____________________________________________________________
consensus             GAAGGCCACAGACAATAATCAAACCACTAAAGTAAACAGCATCGTATGTGCTGATTGTGA
 
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rJMSF001M07+          GGGAAATGGTGCAATATTGTGCAAACAATGCAAAGGCTCCGGTGTTAACTCTGTCGACCA
JMSF011M04-           GGGAAATGGTGCAATATTGTGCAAACAATGCAAAGGCTCCGGTGTTAACTCTGTCGACCA
rJMSF011M04+          GGGAAATGGTGCAATATTGTGCAAACAATGCAAAGGCTCCGGTGTTAACTCTGTCGACCA
JMFF006N17-           GGGGAATGGTGCAATATTGTGCAAACAATGCAAAGGCTCCGGTGTTAACTCTGTCGACCA
rJMFF006N17+          GGGGAATGGTGCAATATTGTGCAAACAATGCAAAGGCTCCGGTGTTAACTCTGTCGACCA
                      ____________________________________________________________
consensus             GGGAAATGGTGCAATATTGTGCAAACAATGCAAAGGCTCCGGTGTTAACTCTGTCGACCA
 
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rJMSF001M07+          TTTCAATGGGCAGTTCAAAGCCGGGCAACTATGCTGGCTTTGCAGGGGTAAGAAGGAGAT
JMSF011M04-           TTTCA                                                       
rJMSF011M04+          TTTCAATGGGCAGTTCAAAGCCGGGCAACTATGCTGGCTTTGCAGGGGTAAGAAGGAGAT
JMFF006N17-           TTTCAATGGGCAGTTCAAAGCCGGGCAACTATGCTGGCTTTGCAGGGGTAANAAGGAGAT
rJMFF006N17+          TTTCAATGGGCAGTTCAAAGCCGGGCAACTATGCTGGCTTTGCAGGGGTAAGAAGGAGAT
                      ____________________________________________________________
consensus             TTTCAATGGGCAGTTCAAAGCCGGGCAACTATGCTGGCTTTGCAGGGGTAAGAAGGAGAT
 
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rJMSF001M07+          TCTATGTGGGAACTGCAATGGAGCTGGATTTGTTGGTGGATTTATGAGCACTTTTGATGA
rJMSF011M04+          TCTATGTGGGAACTGCAATGGAGCTGGATTTGTTGGTGGATTTATGAGCACTTTTGATGA
JMFF006N17-           TCTATGTGGGAACTGCAATGGAGCTGGATTTGTTGGTGGATTTATGAGCACTTTTGATGA
rJMFF006N17+          TCTATGTGGGAACTGCAATGGAGCTGGATTTGTTGGTGGATTTATGAGCACTTTTGATGA
                      ____________________________________________________________
consensus             TCTATGTGGGAACTGCAATGGAGCTGGATTTGTTGGTGGATTTATGAGCACTTTTGATGA
 
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rJMSF001M07+          GTAGAGAGAGTTGGGAATAATGCAATGCTGCATCTAGTGTTGTTGTATGTCACCGCCATT
rJMSF011M04+          GTAGAGAGAGTTGGGAATAATGCAATGCTGCATCTAGTGTTGTTGTATGTCACCGCCATT
JMFF006N17-           GTANAGAGAGTTGGGAATAATGCAATGCTGCATCTAGTGTTGTTGTATGTCACCGCCATT
rJMFF006N17+          GTAGAGAGAGTTGGGAATAATGCAATGCTGCATCTAGTGTTGTTGTATGTCACCGCCATT
                      ____________________________________________________________
consensus             GTAGAGAGAGTTGGGAATAATGCAATGCTGCATCTAGTGTTGTTGTATGTCACCGCCATT
 
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rJMSF001M07+          GACCTTAGCTTGCTTGCCACCAAAATGTTGTGCATTATTGTATTTTTGTTCTAGTCTTTC
rJMSF011M04+          GACCTTAGCTTGCTTGCCACCAAAATGTTGTGCATTATTGTATTTTTGTTCTAGTCTTTC
JMFF006N17-           GACCTTAGCTTGCTTGCCACCAAAATGTTGTG                            
rJMFF006N17+          GACCTTAGCTTGCTTGCCACCAAAATGTTGTGCATTATTGTATTTTTGTTCTAGTCTTTC
                      ____________________________________________________________
consensus             GACCTTAGCTTGCTTGCCACCAAAATGTTGTGCATTATTGTATTTTTGTTCTAGTCTTTC
 
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rJMSF001M07+          TTTAGATGGCAAATAGATGAGATACCTTTTCAATTTTGCATGAAATATGCTTTGCTGGTA
rJMSF011M04+          TTTAGATGGCAAATAGATGAGATACCTTTTCAATTTTGCATGAAATATGCTTTGCTGGTA
rJMFF006N17+          TTTAGATGGCAAATAGATGAGATACCTTTTCAATTTTGCATGAAATATGCTTTGCTGGTA
                      ____________________________________________________________
consensus             TTTAGATGGCAAATAGATGAGATACCTTTTCAATTTTGCATGAAATATGCTTTGCTGGTA
 
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rJMSF001M07+          TTTTTATTTTTAGTTTTGTGT                                       
rJMSF011M04+          TTTTTATTTTTAGTTTTGTGTTGGAGAAGGCTTGTTGGAATATAATTAAAACATGGTTTC
rJMFF006N17+          TTTTTATTTTTAGTTTTGTGTTGGAGAAGGCTTGTTGGAATATAATT-AAACATGGTTTC
                      ____________________________________________________________
consensus             TTTTTATTTTTAGTTTTGTGTTGGAGAAGGCTTGTTGGAATATAATTAAAACATGGTTTC
 
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rJMSF011M04+          CAATTTCTCTGGACCACTT                                         
rJMFF006N17+          CAATTTCTCTGGACCACTTGTGTAATTGCCTTGGACAAATTAAAGTTGAATAATACCATT
                      ____________________________________________________________
consensus             CAATTTCTCTGGACCACTTGTGTAATTGCCTTGGACAAATTAAAGTTGAATAATACCATT