| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005P19 | Sequence | 402 | 008135 (6) | ref|XP_009801317.1| | 5e-25 | PREDICTED: plastid division protein PDV1 [Nicotiana sylvestris] | 652 | 008135 (6) | ref|XP_009801317.1| | 7e-34 | PREDICTED: plastid division protein PDV1 [Nicotiana sylvestris] |
| JMSF010G20 | Sequence | 361 | 008135 (6) | ref|XP_009801317.1| | 1e-23 | PREDICTED: plastid division protein PDV1 [Nicotiana sylvestris] | 794 | 008135 (6) | ref|XP_009801317.1| | 1e-59 | PREDICTED: plastid division protein PDV1 [Nicotiana sylvestris] |
| JMSF038F19 | Sequence | 687 | 008135 (6) | ref|XP_009801317.1| | 3e-78 | PREDICTED: plastid division protein PDV1 [Nicotiana sylvestris] | 848 | 008135 (6) | ref|XP_009801317.1| | 9e-76 | PREDICTED: plastid division protein PDV1 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF010G20- GTCTTTTCCTCC
JMFF005P19- AGAAAATACAGAAAACAGTTGTATTCCGGAGGATTGTTTGTCCTCGTCTTTTCCTCC
JMSF038F19- GTCTTTTCCTCC
____________________________________________________________
consensus AGAAAATACAGAAAACAGTTGTATTCCGGAGGATTGTTTGTCCTCGTCTTTTCCTCC
. : . : . : . : . : . :
JMSF010G20- ATGAAATGGGAAATGGAGGTGGAAGAGAAAGAGATCGAAGTTGTGCTGGAGAAAATTTGG
JMFF005P19- ATGAAATGGGAAATGGAGGTGGAAGAGAAAGAGATCGAAGTTGTGCTGGAGAAAATTTGG
JMSF038F19- ATGAAATGGGAAATGGAGGTGGAAGAGAAAGAGATCGAAGTTGTGCTGGAGAAAATTTGG
____________________________________________________________
consensus ATGAAATGGGAAATGGAGGTGGAAGAGAAAGAGATCGAAGTTGTGCTGGAGAAAATTTGG
. : . : . : . : . : . :
JMSF010G20- GATTTGCACGATAAGTTTAGCGACGCAATTCACTCCATCTCCCGAGCTCACTTCCTCAGC
JMFF005P19- GATTTGCACGATAAGTTTAGCGACGCAATTCACTCCATCTCCCGAGCTCACTTCCTCAGC
JMSF038F19- GATTTGCACGATAAGTTTAGCGACGCAATTCACTCCATCTCCCGAGCTCACTTCCTCAGC
____________________________________________________________
consensus GATTTGCACGATAAGTTTAGCGACGCAATTCACTCCATCTCCCGAGCTCACTTCCTCAGC
. : . : . : . : . : . :
JMSF010G20- TCCGTCAAGTCTCGCGGCAAAACCGAGGATTTCCACTTTCCCCACCGGCCAAGGAAGAAG
JMFF005P19- TCCGTCAAGTCTCGCGGCAAAACCGAGGATTTCCACTTTCCCCACCGGCCAAGGAAGAAG
JMSF038F19- TCCGTCAAGTCTCGCGGCAAAACCGAGGATTTCCACTTTCCCCACCGGCCAAGGAAGAAG
____________________________________________________________
consensus TCCGTCAAGTCTCGCGGCAAAACCGAGGATTTCCACTTTCCCCACCGGCCAAGGAAGAAG
. : . : . : . : . : . :
JMSF010G20- CCGGAGGCGGATTCCTATCAGAGAGCGCACAATAAAGAAGTTAGGAACGACGGAAACAAG
JMFF005P19- CCGGAGGCGGATTCCTATCAGAGAGCGCACAATAAAGAAGTTAGGAACGACGGAAACAAG
JMSF038F19- CCGGAGGCGGATTCCTATCAGAGAGCGCACAATAAAGAAGTTAGGAACGACGGAAACAAG
____________________________________________________________
consensus CCGGAGGCGGATTCCTATCAGAGAGCGCACAATAAAGAAGTTAGGAACGACGGAAACAAG
. : . : . : . : . : . :
JMSF010G20- GCTTCCGGGTTCGTCTTTGTGAAGGAGTTCCGAGTTGGCGATGAGGATGACTCGGCTGCG
JMFF005P19- GCTTCCGGGTTCGTCTTTGTGAAGGAGTTCCGAGTTGGCGATGAGGATGACTCGGCTGCG
JMSF038F19- GCTTCCGGGTTCGTCTTTGTGAAGGAGTTCCGAGTTGGCGATGAGGATGACTCGGCTGCG
____________________________________________________________
consensus GCTTCCGGGTTCGTCTTTGTGAAGGAGTTCCGAGTTGGCGATGAGGATGACTCGGCTGCG
. : . : . : . : . : . :
JMSF010G20- GTTCGTGAAGCTAAGAGCCTAAACGCCATCCGAACCGCCC
JMFF005P19- GTTCGTGAAGCTAAGAGCCTAAACGCCATCCGAACCGCCC
JMSF038F19- GTTCGTGAAGCTAAGAGCCTAAACGCCATCCGAACCGCCCTCGAAAACCTCGAAGACCAG
rJMSF038F19+ GCCCTCGAAAACCTCGAAGACCAG
____________________________________________________________
consensus GTTCGTGAAGCTAAGAGCCTAAACGCCATCCGAACCGCCCTCGAAAACCTCGAAGACCAG
. : . : . : . : . : . :
JMSF038F19- CTCGAATTCCTCCATACCATGCAAACGCATCAACGGGCAGAGAGAGATGTTGTGCTTGCT
rJMSF038F19+ CTCGAATTCCTCCATACCATGCAAACGCATCAACGGGCAGAGAGAGATGTTGTGCTTGCT
rJMSF010G20+ CAACNGGCAGAGAGAGATGTTGTGC-TGCT
____________________________________________________________
consensus CTCGAATTCCTCCATACCATGCAAACGCATCAACGGGCAGAGAGAGATGTTGTGCTTGCT
. : . : . : . : . : . :
JMSF038F19- CGCATAGAACAAAGCCGCATTCTCCTTGCATTGAGATTGGCAGAGCATCAGGGTAAAAGG
rJMSF038F19+ CGCATAGAACAAAGCCGCATTCTCCTTGCATTGAGATTGGCAGAGCATCAGGGTAAAAGG
rJMSF010G20+ CGCATAGAACAAAGCCGCATTCTCCNTGCATTGAGATTGGCAGAGCATCAGGGTAAAAGG
____________________________________________________________
consensus CGCATAGAACAAAGCCGCATTCTCCTTGCATTGAGATTGGCAGAGCATCAGGGTAAAAGG
. : . : . : . : . : . :
JMSF038F19- TATAAATGTATAGAAGAAGCTCAAGCACTGGTTTGTGATGTTAAGGATGCCAGTCATTTC
rJMSF038F19+ TATAAATGTATAGAAGAAGCTCAAGCACTGGTTTGTGATGTTAAGGATGCCAGTCATTTC
rJMSF010G20+ TATAAATGTATAGAAGAAGCTCAAGCACTGGTTTGTGATGTTAAGGATGCCAGTCATTTC
____________________________________________________________
consensus TATAAATGTATAGAAGAAGCTCAAGCACTGGTTTGTGATGTTAAGGATGCCAGTCATTTC
. : . : . : . : . : . :
JMSF038F19- GTTTCACCTGAAAGCCTTTCTGGTAATGCACACTGTGAGGATTTTGTTGCACGGGATGGG
rJMSF038F19+ GTTTCACCTGAAAGCCTTTCTGGTAATGCACACTGTGAGGATTTTGTTGCACGGGATGGG
rJMSF010G20+ GTTTCACCTGAAAGCCTTTCTGGTAATGCACACTGTGAGGATTTTGTTGCACGGGATGGG
rJMFF005P19+ TGAAAGCCTTTCTGGTAATGCACACTGTGAGGATTTTGTTGCACGGGATGGG
____________________________________________________________
consensus GTTTCACCTGAAAGCCTTTCTGGTAATGCACACTGTGAGGATTTTGTTGCACGGGATGGG
. : . : . : . : . : . :
JMSF038F19- AAGAGATCAAATGTGTTTCTTAATGTTCTCTTTTCTAGTTTCAATTTCGTCAAGCAGTCC
rJMSF038F19+ AAGAGATCAAATGTGTTTCTTAATGTTCTCTTTTCTAGTTTCAATTTCGTCAAGCAGTCC
rJMSF010G20+ AAGAGATCAAATGTGTTTCTTAATGTTCTCTTTTCTAGTTTCAATTTCGTCAAGCAGTCC
rJMFF005P19+ AAGAGATCAAATGTGTTTCTTAATGTTCTCTTTTCTAGTTTCAATTTCGTCAAGCAGTCC
____________________________________________________________
consensus AAGAGATCAAATGTGTTTCTTAATGTTCTCTTTTCTAGTTTCAATTTCGTCAAGCAGTCC
. : . : . : . : . : . :
rJMSF038F19+ CTTAGACTAGATCATGTGGGTGGGGTGCTTGGAAACGCAGCCCTGGTTGCAATTAGTATG
rJMSF010G20+ CTTAGACTAGATCATGTGGGTGGGGTGCTTGGAAACGCAGCCCTGGTTGCAATTAGTATG
rJMFF005P19+ TTTAGACTAGATCATGTGGGTGGGGTGCTTGGAAACGCAGCCCTGGTTGCAATTAGTATG
____________________________________________________________
consensus CTTAGACTAGATCATGTGGGTGGGGTGCTTGGAAACGCAGCCCTGGTTGCAATTAGTATG
. : . : . : . : . : . :
rJMSF038F19+ CTAGCATTAATGCATCTGCAACAAGCAGGTTGCAAAGAAAAATTCGTTTTGGCCCTTCCA
rJMSF010G20+ CTAGCATTAATGCATCTGCAACAAGCAGGTTGCAAAGAAAAATTCGTTTTGGCCCTTCCA
rJMFF005P19+ CTAGCATTAATGCATCTGCAACAAGCAGGTTGCAAAGAAAAATTCGTTTTGGCCCTTCCA
____________________________________________________________
consensus CTAGCATTAATGCATCTGCAACAAGCAGGTTGCAAAGAAAAATTCGTTTTGGCCCTTCCA
. : . : . : . : . : . :
rJMSF038F19+ CAAAGACACGAAGATGTTATCTACAACAGAAATCTGACCAAAGTCTCTCAACCCACAGGT
rJMSF010G20+ CAAAGACACGAAGATGTTATCTACAACAGAAATCTGACCAAAGTCTCTCAACCCACAGGT
rJMFF005P19+ CAAAGACACGAAGATGTTATCTACAACAGAAATCTGACCAAAGTCTCTCAACCCACAGGT
____________________________________________________________
consensus CAAAGACACGAAGATGTTATCTACAACAGAAATCTGACCAAAGTCTCTCAACCCACAGGT
. : . : . : . : . : . :
rJMSF038F19+ TCATCATCTAGTCGTTTGTCAGAGTTGAACGTGTTGTCAGCTAGGGGCTAGACTGAAAAT
rJMSF010G20+ TCATCATCTAGTCGTTTGTCAGAGTTGAACGTGTTGTCAGCTAGGGGCTAGACTGAAAAT
rJMFF005P19+ TCATCATCTAGTCGTTTGTCAGAGTTGAACGTGTTGTCAGCTAGGGGCTAGACTGAAAAT
____________________________________________________________
consensus TCATCATCTAGTCGTTTGTCAGAGTTGAACGTGTTGTCAGCTAGGGGCTAGACTGAAAAT
. : . : . : . : . : . :
rJMSF038F19+ AATATTATAAACTCTTTTCTCTTCTTGGGTTGACTGGATGAGTTGCTTCAAATGTTGTTA
rJMSF010G20+ AATATTATAAACTCTTTTCTCTTCTTGGGTTGACTGGATGAGTTGCTTCAAATGTTGTTA
rJMFF005P19+ AATATTATAAACTCTTTTCTCTTCTTGGGTTGACTGGATGAGTTGCTTCAAATGTTGTTA
____________________________________________________________
consensus AATATTATAAACTCTTTTCTCTTCTTGGGTTGACTGGATGAGTTGCTTCAAATGTTGTTA
. : . : . : . : . : . :
rJMSF038F19+ ATTCGGTAGAGAGAGGCTGCATATGTGATGACAAATACCCAAATAGGTTAAGCCTAGGAA
rJMSF010G20+ ATTCGGTAGAGAGAGGCTGCATATGTGATGACAAATACCCAAATAGGTTAAGCCTAGGAA
rJMFF005P19+ ATTCGGTAGAGAGAGGCTGCATATGTGATGACAAATACCCAAATAGGTTAAGCCTAGGAA
____________________________________________________________
consensus ATTCGGTAGAGAGAGGCTGCATATGTGATGACAAATACCCAAATAGGTTAAGCCTAGGAA
. : . : . : . : . : . :
rJMSF038F19+ TTTTCATCATCTTGAGTATCGAAATGATGCATTGATTGTTATTCTCTTTGGTGATACAAT
rJMSF010G20+ TTTTCATCATCTTGAGTATCGAAATGATGCATTGATTGTTATTCTCTTTGGTGATACAAT
rJMFF005P19+ TTTTCATCATCTTGAGTATCGAAATGATGCATTGATTGTTATTCTCTTTGGTGATACAAT
____________________________________________________________
consensus TTTTCATCATCTTGAGTATCGAAATGATGCATTGATTGTTATTCTCTTTGGTGATACAAT
. : . : . : . : . : . :
rJMSF038F19+ GTCAGTCCGGTCCTTTCCACTACACAGCAAGATTTCATTGTATATAACTATAAACTTTCA
rJMSF010G20+ GTCAGTCCGGTCCTTTCCACTACACAGCAAGATTTCATTGTATATAACTATAAACTTTCA
rJMFF005P19+ GTCAGTCCGGTCCTTTCCACTACACAGCAAGATTTCATTGTATATAACTATAAACTTTCA
____________________________________________________________
consensus GTCAGTCCGGTCCTTTCCACTACACAGCAAGATTTCATTGTATATAACTATAAACTTTCA
. : . : . : . : . : . :
rJMSF038F19+ TTCATTTGTATCTGTGCGAAACGTGCAACTCTTTATGTATGCAG
rJMSF010G20+ TTCATTTGTATCTGTGCGAAACGTGCAACTCTTTATGTATGCAG
rJMFF005P19+ TTCATTTGTATCTGTGCGAAACGTGCAACTCTTTATGTATGCAGGTAACAGTTGATTTAT
____________________________________________________________
consensus TTCATTTGTATCTGTGCGAAACGTGCAACTCTTTATGTATGCAGGTAACAGTTGATTTAT