| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005J17 | Sequence | 504 | 012146 (6) | dbj|BAO57290.1| | 1e-68 | homogentisate 1,2-dioxygenase [Ipomoea nil] | 750 | 008134 (6) | dbj|BAO57290.1| | 2e-133 | homogentisate 1,2-dioxygenase [Ipomoea nil] |
| JMSF010J10 | Sequence | 415 | 012146 (6) | dbj|BAO57290.1| | 4e-44 | homogentisate 1,2-dioxygenase [Ipomoea nil] | 758 | 008134 (6) | dbj|BAO57290.1| | 3e-103 | homogentisate 1,2-dioxygenase [Ipomoea nil] |
| JMSF015N02 | Sequence | 231 | 012146 (6) | 771 | 008134 (6) | dbj|BAO57290.1| | 2e-142 | homogentisate 1,2-dioxygenase [Ipomoea nil] | |||
| JMSF032M01 | Sequence | 596 | 012146 (6) | dbj|BAO57290.1| | 8e-126 | homogentisate 1,2-dioxygenase [Ipomoea nil] | 609 | 008134 (6) | dbj|BAO57290.1| | 8e-108 | homogentisate 1,2-dioxygenase [Ipomoea nil] |
| JMSF032N01 | Sequence | 675 | 012146 (6) | dbj|BAO57290.1| | 2e-147 | homogentisate 1,2-dioxygenase [Ipomoea nil] | 706 | 008134 (6) | dbj|BAO57290.1| | 1e-132 | homogentisate 1,2-dioxygenase [Ipomoea nil] |
| JMSF043P02 | Sequence | 695 | 012146 (6) | dbj|BAO57290.1| | 1e-104 | homogentisate 1,2-dioxygenase [Ipomoea nil] | 765 | 008134 (6) | dbj|BAO57290.1| | 4e-140 | homogentisate 1,2-dioxygenase [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
rJMSF015N02+ CTTCAC
____________________________________________________________
consensus CTTCAC
. : . : . : . : . : . :
rJMSF043P02+ AAAACAAGAGTTTTCACCATTCAACGTGGTTGCTTGGCATGGCAATTATGCCCCTTA
rJMSF010J10+ AAGAGTTTTCACCATTCAACGTGGTTGCTTGGCATGGCAATTATGCCCCTTA
rJMSF032N01+ TGCTTGGCATGGCAATTATGCCCCTTA
rJMSF015N02+ TGCAAAACAAGAGTTTTCACCATTCAACGTGGTTGCTTGGCATGGCAATTATGCCCCTTA
rJMFF005J17+ GTGGTTGCTTGGCATGGCAATTATGCCCCTTA
____________________________________________________________
consensus TGCAAAACAAGAGTTTTCACCATTCAACGTGGTTGCTTGGCATGGCAATTATGCCCCTTA
. : . : . : . : . : . :
rJMSF043P02+ CAAGTATGATCTAAGCAAGTTCTGCCCTTATAACACAGTTTTGTTTGATCACAGTGATCC
rJMSF010J10+ CAAGTATGATCTAAGCAAGTTCTGCCCTTATAACACAGTTTTGTTTGATCACAGTGATCC
rJMSF032N01+ CAAGTATGATCTAAGCAAGTTCTGCCCTTATAACACAGTTTTGTTTGATCACAGTGATCC
rJMSF032M01+ GTTTGATCACAGTGATCC
rJMSF015N02+ CAAGTATGATCTAAGCAAGTTCTGCCCTTATAACACAGTTTTGTTTGATCACAGTGATCC
rJMFF005J17+ CAAGTATGATTTAAGCAAGTTCTGCCCTTATAACACAGTTTTGTTTGATCACAGTGATCC
____________________________________________________________
consensus CAAGTATGATCTAAGCAAGTTCTGCCCTTATAACACAGTTTTGTTTGATCACAGTGATCC
. : . : . : . : . : . :
rJMSF043P02+ ATCAATAAACACAGTTTTGACAGCACCCACAGATAAACCAGGAGTGGCATTGATGGACTT
rJMSF010J10+ ATCAATAAACACAGTTTTGACAGCACCCACAGATAAACCAGGAGTGGCATTGATGGACTT
rJMSF032N01+ ATCAATAAACACAGTTTTGACAGCACCCACAGATAAACCAGGAGTGGCATTGATGGACTT
rJMSF032M01+ ATCAATAAACACAGTTTTGACAGCACCCACAGATAANCCAGGAGTGGCATTGATGGACTT
rJMSF015N02+ ATCAATAAACACAGTTTTGACAGCACCCACAGATAAACCAGGAGTGGCATTGATGGACTT
rJMFF005J17+ ATCAATAAACACAGTTTTGACAGCACCCACAGATAAACCAGGAGTGGCATTGATGGACTT
____________________________________________________________
consensus ATCAATAAACACAGTTTTGACAGCACCCACAGATAAACCAGGAGTGGCATTGATGGACTT
. : . : . : . : . : . :
rJMSF043P02+ TGTCATTTTTCCACC-TCGATGGTTGGTTGCTGAACACACTTTTCGTCCTCCATATTACC
rJMSF010J10+ TGTCATTTTTCCACCTTCGATGGTTGGTTGCTGAACACACTTTTCGTCCTCCATATTNCC
rJMSF032N01+ TGTCATTTTTCCACC-TCGATGGTTGGTTGCTGAACACACTTTTCGTCCTCCATATTACC
rJMSF032M01+ NGTCATTTTTCCACC-TCGATGGTTGGTTGCTGAACACACTTTTCGTCCTCCATATTACC
rJMSF015N02+ TGTCATTTTTCCACC-TCGATGGTTGGTTGCTGAACACACTTTTCGTCCTCCATATTACC
rJMFF005J17+ TGTCATTTTTCCACC-TCGATGGTTAGTTGCTGAACACACTTTTCGTCCTCCATATTACC
____________________________________________________________
consensus TGTCATTTTTCCACC-TCGATGGTTGGTTGCTGAACACACTTTTCGTCCTCCATATTACC
. : . : . : . : . : . :
rJMSF043P02+ ACCGAAATTGTATGAGTGAATTTATGGGCCTGATCTATGGAGGATACGAGGCAAAAGCTG
rJMSF010J10+ ACCGAAATTGTATGAGTGAATTTATGGGCTTGATCTATGGAGGATACGAGGCAAAAGCTG
rJMSF032N01+ ACCGAAATTGTATGAGTGAATTTATGGGCCTGATCTATGGAGGATACGAGGCAAAAGCTG
rJMSF032M01+ ACCGAAATTGTATGAGTGAATTTATGGGCCTGATCTATGGAGGATACGAGGCAAAAGNTG
rJMSF015N02+ ACCGAAATTGTATGAGTGAATTTATGGGCCTGATCTATGGAGGATACGAGGCAAAAGCTG
rJMFF005J17+ ACCGAAATTGTATGAGTGAATTTATGGGCCTGATCTATGGAGGATACGAGGCAAAAGCTG
____________________________________________________________
consensus ACCGAAATTGTATGAGTGAATTTATGGGCCTGATCTATGGAGGATACGAGGCAAAAGCTG
. : . : . : . : . : . :
rJMSF043P02+ ATGGCTTTCTTCCAGGTGGTGCAAGCCTCCATAGCTGCATGACTCCCCATGGTCCCGATA
rJMSF010J10+ ATGGCTTTCTTCCAGGTGGTGCAAGCCTCCATAGCTGCATGACTCCCCATGGTCCCGATA
rJMSF032N01+ ATGGCTTTCTTCCAGGTGGTGCAAGCCTCCATAGCTGCATGACTCCCCATGGTCCCGATA
rJMSF032M01+ ATGGCTTTCTTCCAGGTGGNGCAAGCCTCCATAGCTGCATGACTCCCCATGGTCCCGATA
rJMSF015N02+ ATGGCTTTCTTCCAGGTGGTGCAAGCCTCCATAGCTGCATGACTCCCCATGGTCCCGATA
rJMFF005J17+ ATGGCTTTCTTCCAGGTGGTGCAAGCCTCCATAGCTGCATGACTCCCCATGGTCCCGATA
____________________________________________________________
consensus ATGGCTTTCTTCCAGGTGGTGCAAGCCTCCATAGCTGCATGACTCCCCATGGTCCCGATA
. : . : . : . : . : . :
rJMSF043P02+ CCAAAACATACGAGAAAACCATAGCCCTGGGAAATGAAGCAGGGCCGCATAGAATCACAG
rJMSF010J10+ CCAAAACATACGAGAAAACCATAGCCCTGGGAAATGAAGCAGGGCCGCATAGAATCACAG
rJMSF032N01+ CCAAAACATACGAGAAAACCATAGCCCTGGGAAATGAAGCAGGGCCGCATAGAATCACAG
rJMSF032M01+ CCAAAACATACGAGAAAACCATAGCCCTGGGAAATGAAGCAGGNCCGCATAGAATCACAG
rJMSF015N02+ CCAAAACATACGAGAAAACCATAGCCCTGGGAAATGAAGCAGGGCCGCATAGAATCACAG
rJMFF005J17+ CCAAAACATACGAGAAAACCATAGCCCTGGGAAATGAAGCAGGGCCGCATAGAATCACAG
____________________________________________________________
consensus CCAAAACATACGAGAAAACCATAGCCCTGGGAAATGAAGCAGGGCCGCATAGAATCACAG
. : . : . : . : . : . :
rJMSF043P02+ GCACGATGGCTTTCATGTTCGAGTCATGCCTCGTACCCCGAGTCTGTCCATGGGCACTGG
rJMSF010J10+ GCANGATGGCTTTCATGTTCGAGTCATGCCTCGTACCCCGAGTCTGTCCATGGGCACNGG
rJMSF032N01+ GCACGATGGCTTTCATGTTCGAGTCATGCCTCGTACCCCGAGTCTGTCCATGGGCACTGG
rJMSF032M01+ GCACGATGGCTTTCATGTTCGAGTCATGCCTNGTACCCCGAGTCTGTCCATGGGCNCTGG
rJMSF015N02+ GCACGATGGCTTTCATGTTCGAGTCATGCCTCGTACCCCGAGTCTGTCCATGGGCACTGG
rJMFF005J17+ GCACGATGGCTTTCATGTTCGAGTCATGCCTCGTACCCCGAGTCTGTCCATGGGCACTGG
____________________________________________________________
consensus GCACGATGGCTTTCATGTTCGAGTCATGCCTCGTACCCCGAGTCTGTCCATGGGCACTGG
. : . : . : . : . : . :
rJMSF043P02+ AATCGCCCTTCATTGATCACGATTATTATCAGTGTTGGATAGGTTTGAAGTCTCACTTCA
rJMSF010J10+ AATCGCCCTTCATTGATCACGATTATTATCAGTGTTGGATAGGTTTGAAGTCTCACTTCA
rJMSF032N01+ AATCGCCCTTCATTGATCACGATTATTATCAGTGTTGGATAGGTTTGAAGTCTCACTTCA
rJMSF032M01+ ANTCGCCCTTCATTGATCACGATTATTATCAGTGTTGGATAGGTTTGAAGTCTCACTTCA
rJMSF015N02+ AATCGCCCTTCATTGATCACGATTATTATCAGTGTTGGATAGGTTTGAAGTCTCACTTCA
rJMFF005J17+ AATCGCCCTTCATTGATCACGATTATTATCAGTGTTGGATAGGTTTGAAGTCTCACTTCA
____________________________________________________________
consensus AATCGCCCTTCATTGATCACGATTATTATCAGTGTTGGATAGGTTTGAAGTCTCACTTCA
. : . : . : . : . : . :
rJMSF043P02+ CAGGAGGATCCACAGATGAAGGGAACAAGGAGTTGGAAAATGGAGACCACTGAAGTATGG
rJMSF010J10+ CAGGAGGATCCACAGATGAAGGGAACAAGGAGTTGGAAAANGGAGACCACTGAAGTATGG
rJMSF032N01+ CAGGAGGATCCACAGATGAAGGGAACAAGGAGTTGGAAAATGGAGACCACTGAAGTATGG
rJMSF032M01+ CAGGAGGATCCACAGATGAAGNGAACAAGGAGTTGGAAAATGGAGCCCACTGAAGTANGG
rJMSF015N02+ CAGGAGGATCCACAGATGAAGGGAACAAGGAGTTGGAAAATGGAGACCACTGAAGTATGG
rJMFF005J17+ CAGGAGGATCCACAGATGAAGGGAACAAGGAGTTGGAAAATGGAGACCACTGAAGTATGG
____________________________________________________________
consensus CAGGAGGATCCACAGATGAAGGGAACAAGGAGTTGGAAAATGGAGACCACTGAAGTATGG
. : . : . : . : . : . :
rJMSF043P02+ CACACCAATGATTGTCATCTTGTCATGGGTTCCACCGGAGTAATGGTTGGTTTGTCTCTA
rJMSF010J10+ CACACCAATGATTGTCATCTTGTCATGGGTTCCACCGGANTAATGGTTGGTTTGTCTCTA
rJMSF032N01+ CACACCAATGATTGTCATCTTGTCATGGGTTCCACCGGAGTAATGGTTGGTTTGTCTCTA
rJMSF032M01+ CACACCAATGATTGTCATCTTGTCATGGGTTCCACCGGAGTAATGGTTGNTTTGTCTCTA
rJMSF015N02+ CACACCAATGATTGTCATCTTGTCATGGGTTCCACCGGAGTAATGGTTGGTTTGTCTCTA
rJMFF005J17+ CACACCAATGATTGTCATCTTGTCATGGGTTCCACCGGAGTAATGGTTGGTTTGTCTCTA
____________________________________________________________
consensus CACACCAATGATTGTCATCTTGTCATGGGTTCCACCGGAGTAATGGTTGGTTTGTCTCTA
. : . : . : . : . : . :
rJMSF043P02+ TCGAAATGCCACAGTTTGTACAGAATAATACATTGTTGGGATG-CAAGTTGATGTATGGG
rJMSF010J10+ TCGAAATGCCACAGTTTGTACNGAATAATACATTGTTGGGATACCAAGNTGATGTATGGG
rJMSF032N01+ TCGAAATGCCACAGTTTGTACAGAATAATAC
rJMSF032M01+ TCGAAATGCCA
rJMSF015N02+ TCGAAATGCCACAGTTTGTACAGAATAATACATTGTTGGGATA-CAAGTTGATGTATGGG
rJMFF005J17+ TCGAAATGCCACAGTTTGTACAGAATAATACATTGTTGGGATA-CAAGTTGATGTATGGG
____________________________________________________________
consensus TCGAAATGCCACAGTTTGTACAGAATAATACATTGTTGGGATA-CAAGTTGATGTATGGG
. : . : . : . : . : . :
rJMSF043P02+ TATGACTGAAACATAAATACGAATAATGAAGATCATGATACATC
rJMSF010J10+ TATGACTGAAACATAAATACGAATAATGAAGATCATGATACATC
rJMSF015N02+ TATGACTGAAACATAAATACGAATAATGAAGATCATGATACATC
rJMFF005J17+ TATGACTGAAACATAAATACGAATAATGAAGATCATGATACATCTTTTATTGCTGATTTG
____________________________________________________________
consensus TATGACTGAAACATAAATACGAATAATGAAGATCATGATACATCTTTTATTGCTGATTTG