Contig 008131:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004N16Sequence461000997 (33)ref|XP_009591976.1|2e-22PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]659008131 (6)ref|NP_001266156.1|1e-59uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A
JMFF013H14Sequence570000997 (33)ref|XP_009591976.1|2e-59PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]656008131 (6)ref|XP_009785001.1|2e-63PREDICTED: protein argonaute 4-like [Nicotiana sylvestris]
JMFF021G19Sequence390000997 (33)ref|XP_009591976.1|9e-20PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]637008131 (6)ref|NP_001266156.1|2e-48uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A
JMFS003C02Sequence519008131 (6)ref|NP_001266156.1|4e-47uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A
JMSF033N16Sequence591000997 (33)ref|XP_009591976.1|3e-59PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]692008131 (6)ref|XP_009785001.1|7e-78PREDICTED: protein argonaute 4-like [Nicotiana sylvestris]
JMSF050F08Sequence671000997 (33)ref|XP_006362741.1|3e-75PREDICTED: protein argonaute 4-like [Solanum tuberosum]774008131 (6)gb|ACZ04920.1|3e-117argonaute 4-like protein [Pelargonium x hortorum]

Alignment

This contig is upended


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rJMSF050F08+                                                                    AG
                      ____________________________________________________________
consensus                                                                       AG
 
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rJMSF050F08+          ATGATGGAATTATGAGGGAGCTATTGCTAGACTTTTATGTTAGTTCTGGGAAAAGGAAGC
                      ____________________________________________________________
consensus             ATGATGGAATTATGAGGGAGCTATTGCTAGACTTTTATGTTAGTTCTGGGAAAAGGAAGC
 
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rJMSF050F08+          CTGACCAAATTATAATCTTCAGGGATGGTGTCAGTGAATCCCAATTCAATCAAGTTCTTA
                      ____________________________________________________________
consensus             CTGACCAAATTATAATCTTCAGGGATGGTGTCAGTGAATCCCAATTCAATCAAGTTCTTA
 
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rJMSF050F08+          ACATTGAACTTGATCAGATCATTGAGGCTTGTAAATTTCTTGATGAGAAATGGTCGCCCA
rJMSF033N16+                                                    ATGAGAAATGGTCGCCCA
                      ____________________________________________________________
consensus             ACATTGAACTTGATCAGATCATTGAGGCTTGTAAATTTCTTGATGAGAAATGGTCGCCCA
 
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rJMSF050F08+          AGTTTACGGTCATTGTTGCTCAGAAGAATCATCACACCAAGTTCTTCCAACCTGGGTCTC
rJMSF033N16+          AGTTTACGGTCATTGTTGCTCAGAAGAATCATCACACCAAGTTCTTCCAACCTGGGTCTC
rJMFF013H14+                                                                 GTCTC
rJMFF004N16+                                                                     C
                      ____________________________________________________________
consensus             AGTTTACGGTCATTGTTGCTCAGAAGAATCATCACACCAAGTTCTTCCAACCTGGGTCTC
 
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rJMSF050F08+          CTGATAATGTTCAACCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
rJMSF033N16+          CTGATAATGTTCAACCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
rJMFF013H14+          CTGATAATGTTCAACCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
rJMFF021G19+                            GGACAATTATTGATAGTAAAGTTTGTCATCCGGAAAAACAAT
rJMFF004N16+          CTGATAATGTTCANCCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
                      ____________________________________________________________
consensus             CTGATAATGTTCAACCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
 
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rJMSF050F08+          GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
JMFS003C02-                     TTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
rJMSF033N16+          GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
rJMFF013H14+          GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
rJMFF021G19+          GACTTTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
rJMFF004N16+          GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
                      ____________________________________________________________
consensus             GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
 
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rJMSF050F08+          TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
JMFS003C02-           TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
rJMSF033N16+          TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
rJMFF013H14+          TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
rJMFF021G19+          TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
rJMFF004N16+          TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
                      ____________________________________________________________
consensus             TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
 
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rJMSF050F08+          ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
JMFS003C02-           ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
rJMSF033N16+          ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
rJMFF013H14+          ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
rJMFF021G19+          ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
rJMFF004N16+          ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
                      ____________________________________________________________
consensus             ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
 
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rJMSF050F08+          TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
JMFS003C02-           TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
rJMSF033N16+          TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
rJMFF013H14+          TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
rJMFF021G19+          TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
rJMFF004N16+          TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
                      ____________________________________________________________
consensus             TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
 
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rJMSF050F08+          TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
JMFS003C02-           TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
rJMSF033N16+          TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
rJMFF013H14+          TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
rJMFF021G19+          TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
rJMFF004N16+          TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
                      ____________________________________________________________
consensus             TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
 
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rJMSF050F08+          ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
JMFS003C02-           ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
rJMSF033N16+          ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
rJMFF013H14+          ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
rJMFF021G19+          ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
rJMFF004N16+          ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
                      ____________________________________________________________
consensus             ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
 
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rJMSF050F08+          CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
JMFS003C02-           CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
rJMSF033N16+          CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
rJMFF013H14+          CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
rJMFF021G19+          CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
rJMFF004N16+          CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
                      ____________________________________________________________
consensus             CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
 
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rJMSF050F08+          TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCA      
JMFS003C02-           TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
rJMSF033N16+          TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
rJMFF013H14+          TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
rJMFF021G19+          TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
rJMFF004N16+          TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
                      ____________________________________________________________
consensus             TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
 
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JMFS003C02-           GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGG           
rJMSF033N16+          GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
rJMFF013H14+          GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
rJMFF021G19+          GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
rJMFF004N16+          GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
                      ____________________________________________________________
consensus             GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
 
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rJMSF033N16+          AGCCTTTTGTGTT                                               
rJMFF013H14+          AGCCTTTTGTGTTTGTTTTTCTTTTAGT                                
rJMFF021G19+          AGCCTTTTGTGTTTGTTTTTCTTTTAGTGTTTGTTCGGAATGAACTTAATTATCT     
rJMFF004N16+          AGCCTTTTGTGTTTGTTTTTCTTTTAGTGTTTGTTCGGAATGAACTTAATTATCTATCTA
                      ____________________________________________________________
consensus             AGCCTTTTGTGTTTGTTTTTCTTTTAGTGTTTGTTCGGAATGAACTTAATTATCTATCTA