Contig 008125:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003M13Sequence523001713 (12)ref|XP_009615859.1|1e-81PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [763008125 (9)ref|XP_009122464.1|6e-75PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Brass
JMFF007M12Sequence619001713 (12)ref|XP_009615859.1|1e-71PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [800008125 (9)ref|XP_009131078.1|1e-108PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [
JMFF012H11Sequence557001713 (12)ref|XP_009615859.1|3e-91PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [785008125 (9)ref|XP_009131078.1|6e-111PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [
JMFF013H01Sequence582001713 (12)ref|XP_009615859.1|1e-97PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [287008125 (9)gb|AFK41633.1|6e-53unknown [Medicago truncatula]
JMFF022O19Sequence521001713 (12)ref|XP_009615859.1|4e-90PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [715008125 (9)ref|XP_010491494.1|9e-87PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [
JMFF024D09Sequence508001713 (12)ref|XP_009615859.1|9e-82PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [801008125 (9)ref|XP_009131078.1|1e-108PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [
JMFF025O21Sequence586001713 (12)ref|XP_009615859.1|5e-106PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [741008125 (9)ref|XP_010491494.1|8e-93PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [
JMFF031M14Sequence526001713 (12)ref|XP_009615859.1|9e-48PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [708008125 (9)ref|XP_010452860.1|2e-84PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [
JMFF032H18Sequence374001713 (12)ref|XP_009615859.1|1e-46PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [821008125 (9)ref|XP_009131078.1|9e-111PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [

Alignment

This contig is upended


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rJMFF012H11+                                                  GAGGAAATGAGTATTCCCAT
rJMFF032H18+                                                     GAAATGAGTATTCCCAT
                      ____________________________________________________________
consensus                                                     GAGGAAATGAGTATTCCCAT
 
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rJMFF012H11+          TGAAGGAGCTGATTGAGAGGCACTGTGGTGGTGTTCGTGGTGGATGGGACAATTTACTTG
rJMFF007M12+              GGAGCTGATTGAGAGGCACTGTGGTGGTGTTCGTGGTGGATGGGACAATTTACTTG
rJMFF024D09+              GGAGCTGATTGAGAGGCACTGTGGTGGTGTTCGTGGTGGATGGGACAATTTACTTG
rJMFF032H18+          TGAAGGAGCTGATTGAGAGGCACTGTGGTGGTGTTCGTGGTGGATGGGACAATTTACTTG
                      ____________________________________________________________
consensus             TGAAGGAGCTGATTGAGAGGCACTGTGGTGGTGTTCGTGGTGGATGGGACAATTTACTTG
 
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rJMFF012H11+          CTATTATTCCAGGAGGTTCGTCTGTCCCATTAATCCCCAAGCACATGTGTGAGGATGTTC
rJMFF007M12+          CTATTATTCCAGGAGGTTCGTCTGTCCCATTAATCCCCAAGCACATGTGTGAGGATGTTC
rJMFF024D09+          CTATTATTCCAGGAGGTTCGTCTGTCCCATTAATCCCCAAGCACATGTGTGAGGATGTTC
rJMFF025O21+             TTATTCCAGGAGGTTCGTCTGTCCCATTAATCCCCAAGCACATGTGTGAGGATGTTC
rJMFF022O19+                                       TTAATCCCCAAGCACATGTGTGAGGATGTTC
rJMFF031M14+                                              CCAAGCACATGTGTGAGGATGTTC
rJMFF013H01+                                   CCCATTAATCCCCAAGCACATGTGTGAGGATGTTC
rJMFF032H18+          CTATTATTCCAGGAGGTTCGTCTGTCCCATTAATCCCCAAGCACATGTGTGAGGATGTTC
                      ____________________________________________________________
consensus             CTATTATTCCAGGAGGTTCGTCTGTCCCATTAATCCCCAAGCACATGTGTGAGGATGTTC
 
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rJMFF012H11+          TGATGGACTTTGATGCACTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
rJMFF007M12+          TGATGGACTTTGATGCACTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
rJMFF024D09+          TGATGGACTTTGATGCACTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
rJMFF025O21+          TGATGGACTTTGATGCACTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
rJMFF022O19+          TGATGGACTTTGATGCACTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
rJMFF031M14+          TGATGGACTTTGATGCACTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
rJMFF013H01+          TGATGGACTTTGATGCANTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
rJMFF032H18+          TGATGGACTTTGATGCACTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
rJMFF003M13+                           CTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
                      ____________________________________________________________
consensus             TGATGGACTTTGATGCACTAAAGGCTGTTCAGTCAGGTTTGGGCACTGCTGCTGTCATTG
 
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rJMFF012H11+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
rJMFF007M12+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
rJMFF024D09+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
rJMFF025O21+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
rJMFF022O19+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
rJMFF031M14+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
rJMFF013H01+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACANAC
rJMFF032H18+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
rJMFF003M13+          TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
                      ____________________________________________________________
consensus             TGATGGATAAGTCAACTGATATTGTAGATGCAATTGCAAGGCTATCTTACTTCTACAAAC
 
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rJMFF012H11+          ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
rJMFF007M12+          ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
rJMFF024D09+          ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
rJMFF025O21+          ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
rJMFF022O19+          ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
rJMFF031M14+          ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
rJMFF013H01+          ACGAGAGCTGTGGCCAATGTACTCCTTCCAGAGAAGGTACNCCGTGGCTTTGGATGCTCA
rJMFF032H18+          ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
rJMFF003M13+          ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
                      ____________________________________________________________
consensus             ACGAGAGCTGTGGCCAATGTACTCCTTGCAGAGAAGGTACACCGTGGCTTTGGATGCTCA
 
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rJMFF012H11+          TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
rJMFF007M12+          TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
rJMFF024D09+          TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
rJMFF025O21+          TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
rJMFF022O19+          TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
rJMFF031M14+          TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
rJMFF013H01+          TGGAAAGAATGAAGGTTGGNAACGCAAAGCTCGAGGAGATTGATATNCTTCANGAGGTGA
rJMFF032H18+          TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
rJMFF003M13+          TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
                      ____________________________________________________________
consensus             TGGAAAGAATGAAGGTTGGGAACGCAAAGCTCGAGGAGATTGATATGCTTCATGAGGTGA
 
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rJMFF012H11+          CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
rJMFF007M12+          CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
rJMFF024D09+          CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
rJMFF025O21+          CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
rJMFF022O19+          CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
rJMFF031M14+          CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
rJMFF013H01+          CANAACAGATTG                                                
rJMFF032H18+          CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
rJMFF003M13+          CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
                      ____________________________________________________________
consensus             CAAAACAGATTGAAGGACATACAATTTGTGCATTAGGTGATGCTGCTGCATGGCCTGTTC
 
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rJMFF012H11+          AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
rJMFF007M12+          AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
rJMFF024D09+          AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
rJMFF025O21+          AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
rJMFF022O19+          AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
rJMFF031M14+          AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
rJMFF032H18+          AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
rJMFF003M13+          AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
                      ____________________________________________________________
consensus             AGGGTCTTATTAGGCACTTTAGACCAGAGCTTGAAAGAAGGATCAGGGAGCGGGCAGACA
 
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rJMFF012H11+          GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
rJMFF007M12+          GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
rJMFF024D09+          GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
rJMFF025O21+          GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
rJMFF022O19+          GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
rJMFF031M14+          GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
rJMFF032H18+          GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
rJMFF003M13+          GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
                      ____________________________________________________________
consensus             GGGAGCTACTGCAGGCTGCTGCTAATTAATTAACTGTTTTATTAAGGGAAACACATTTTC
 
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rJMFF012H11+          CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
rJMFF007M12+          CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
rJMFF024D09+          CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
rJMFF025O21+          CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
rJMFF022O19+          CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
rJMFF031M14+          CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
rJMFF032H18+          CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
rJMFF003M13+          CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
                      ____________________________________________________________
consensus             CGCTTTGCACTACAGAATAAGATTCCTAAGAACCCAGACCCCAGTGCAAAGGTGCTATCC
 
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rJMFF012H11+          TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
rJMFF007M12+          TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
rJMFF024D09+          TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
rJMFF025O21+          TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
rJMFF022O19+          TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
rJMFF031M14+          TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
rJMFF032H18+          TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
rJMFF003M13+          TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
                      ____________________________________________________________
consensus             TGGGTGCTACTGCTGTCTTCCCAATGGACAGTGTATTTTATCGTTGAGCTTGTATAGACT
 
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rJMFF012H11+          TTGACTCATTGGTGAATCTATGGATTTTTGCTTCTGATTTTATGATGGGTTTTGTTGCTT
rJMFF007M12+          TTGACTCATTGGTGAATCTATGGATTTTTCCTTCTGATTTTATGATGGATTTTGTTGCTT
rJMFF024D09+          TTGACTCATTGGTGAATCTATGGATTTTTGCTTCTGATTTTATGATGGATTTTGTTGCTT
rJMFF025O21+          TTGACTCATTGGTGAATCTATGGATTTTTGCTTCTGATTTTATGATGGATTTTGTTGCTT
rJMFF022O19+          TTGACTCATTGGTGAATCTATGGATTTTTGCTTCTGATTTTATGATGGATTTTGTTGCTT
rJMFF031M14+          TTGACTCATTGGTGAATCTATGGATTTTTNNTTCTGATTTTATGATGGATTTTGTTGCTT
rJMFF032H18+          TTGACTCATTGGTGAATCTATGGATTTTTCCTTCTGATTTTATGATGGATTTTGTTGCTT
rJMFF003M13+          TTGACTCATTGGTGAATCTATGGATTTTTGCTTCTGATTTTATGATGGATTTTGTTGCTT
                      ____________________________________________________________
consensus             TTGACTCATTGGTGAATCTATGGATTTTTGCTTCTGATTTTATGATGGATTTTGTTGCTT
 
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rJMFF012H11+          GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTC               
rJMFF007M12+          GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTCATGCATTGATAGTTC
rJMFF024D09+          GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTCATGCATTGATAGTTC
rJMFF025O21+          GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTCATGCATTGATAGTTC
rJMFF022O19+          GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTCATGCATTGATAGTTC
rJMFF031M14+          GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTCATGCATTGATAGTTC
rJMFF032H18+          GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTCATGCATTGATAGTTC
rJMFF003M13+          GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTCATGCATTGATAGTTC
                      ____________________________________________________________
consensus             GTAATACAACCAGATGCTGGAGCACAATTTCAGTGGCTCTGCCTCATGCATTGATAGTTC
 
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rJMFF007M12+          TTTCTATC-TGAAAATAAGAACCAA                                   
rJMFF024D09+          TTTCTATC-TGAAAATAANAACCAA                                   
rJMFF025O21+          TTTCTATC-TGAAAATAAGAACCAA                                   
rJMFF022O19+          TTTCTATC-TGAAAATAAGAACCAA                                   
rJMFF031M14+          TTTCTATC-TGAAAATAAGAACCAA                                   
rJMFF032H18+          TTTCTATC-TGAAAATAAGAACCAA                                   
rJMFF003M13+          TTTCTATCTTGAAAATAATGAACCAACATCTTGGTCCATCACTTTTGCTTTTATAATTTT
                      ____________________________________________________________
consensus             TTTCTATC-TGAAAATAAGAACCAAACATCTTGGTCCATCACTTTTGCTTTTATAATTTT
 
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rJMFF003M13+          TGATTTTGTAATTTGTCACTTTGAAACTAGGGTTCTAATATCAGCTGTCTGCATTGGTAG
                      ____________________________________________________________
consensus             TGATTTTGTAATTTGTCACTTTGAAACTAGGGTTCTAATATCAGCTGTCTGCATTGGTAG