Contig 008121:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001G13Sequence531010908 (5)gb|KJB36915.1|2e-81hypothetical protein B456_006G182500 [Gossypium raimondii]599008121 (4)ref|XP_010423956.1|1e-39PREDICTED: LIMR family protein At5g01460-like [Camelina sativa]
JMFF002F15Sequence592010908 (5)gb|KJB36913.1|2e-84hypothetical protein B456_006G182500 [Gossypium raimondii] gb|KJB36917.1| hypoth748008121 (4)gb|KDO56636.1|1e-48hypothetical protein CISIN_1g021594mg [Citrus sinensis]
JMSF045O05Sequence787010908 (5)gb|KHN05546.1|2e-93LIMR family protein [Glycine soja]641008121 (4)gb|KDO56636.1|1e-58hypothetical protein CISIN_1g021594mg [Citrus sinensis]
JMSF048I15Sequence674010908 (5)gb|KJB36913.1|3e-80hypothetical protein B456_006G182500 [Gossypium raimondii] gb|KJB36917.1| hypoth727008121 (4)gb|KDO56636.1|2e-57hypothetical protein CISIN_1g021594mg [Citrus sinensis]

Alignment

This contig is upended


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rJMSF048I15+                                                 ATTCCTAAATTGGGTTTTCAT
                      ____________________________________________________________
consensus                                                    ATTCCTAAATTGGGTTTTCAT
 
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rJMSF048I15+          CAAGTTAGATGATGTTTGGGGTCTTTTGGGCACTGCAGCATTTGCATTTTTCTGCTTCTA
rJMFF002F15+                                          CTGCAGCATTCGCATTTTTCTGCTTCTA
                      ____________________________________________________________
consensus             CAAGTTAGATGATGTTTGGGGTCTTTTGGGCACTGCAGCATTTGCATTTTTCTGCTTCTA
 
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rJMSF048I15+          CCTTCTTCTTGCAGTGATGGCTGGGGCTATGATGCTTGGGTTGAAATTAGTTTTCGTCAC
rJMSF045O05+               TTCTTGCAGTGATGGCTGGGGCTATGATGCTTGGGTTGAAATTAGTTTTCGTCAC
rJMFF002F15+          CNTTCTTCTTGCAGTGATGGCTGGGGCTATGATGCTTGGGTTGAAATTAGTTTTCGTCAC
                      ____________________________________________________________
consensus             CCTTCTTCTTGCAGTGATGGCTGGGGCTATGATGCTTGGGTTGAAATTAGTTTTCGTCAC
 
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rJMSF048I15+          AATCCATCCAATGAAATGGGGAGCTACGCTAATGAACTCGTTTCTTTTTAATGTGGGCCT
rJMSF045O05+          AATCCATCCAATGAAATGGGGAGCTACGCTAATGAACTCGTTTCTTTTTAATGTGGGCCT
rJMFF001G13+                                      CTAATGAACTCGTTTCTTTTTAATGTGGGCCT
rJMFF002F15+          AATCCATCCAATGAAATGGGGAGCTACGCTAATGAACTCGTTTCTTTTTAATGTGGGCCT
                      ____________________________________________________________
consensus             AATCCATCCAATGAAATGGGGAGCTACGCTAATGAACTCGTTTCTTTTTAATGTGGGCCT
 
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rJMSF048I15+          CATTCTTCTTTGCTCTATCAGTGTCATTCAGTTCTGTGCGACTGCCTTTGCATATTATGC
rJMSF045O05+          CATTCTTCTTTGCTCTATCAGTGTCATTCAGTTCTGTGCGACTGCCTTTGCATATTATGC
rJMFF001G13+          CATTCNTCTTTGCTCTATCAGTGTCATTCAGTTCTGTGCGACTGCCTTTGCATATTATGC
rJMFF002F15+          CATTCTTCTTTGCTCTATCAGTGTCATTCAGTTCTGTGCGACTGCCTTTGCATATTATGC
                      ____________________________________________________________
consensus             CATTCTTCTTTGCTCTATCAGTGTCATTCAGTTCTGTGCGACTGCCTTTGCATATTATGC
 
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rJMSF048I15+          TCAAGCTACTGCAGCTCAAGAAATATTTGGTCACACATTGCAATCTCTTCGCGGAATTAA
rJMSF045O05+          TCAAGCTACTGCAGCTCAAGAAATATTTGGTCACACATTGCAATCTCTTCGCGGAATTAA
rJMFF001G13+          TCAAGCTACTGCAGCTCAAGAAATATTTGGTCACACATTGCAATCTCTTCGCGGAATTAA
rJMFF002F15+          TCAAGCTACTGCAGCTCAAGAAATATTTGGTCACACATTGCAATCTCTTCGCGGAATTAA
                      ____________________________________________________________
consensus             TCAAGCTACTGCAGCTCAAGAAATATTTGGTCACACATTGCAATCTCTTCGCGGAATTAA
 
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rJMSF048I15+          ATATTTATACAAGTATAACGTGTTTCAAATTGGATTCATCGTTCTCGCAGGGCTGACATT
rJMSF045O05+          ATATTTATACAAGTATAACGTGTTTCAAATTGGATTCATCGTTCTCGCAGGGCTGACATT
rJMFF001G13+          ATATTTATACAAGTATAACGTGTTTCAAATTGGATTCATCGTTCTCGCAGGGCTGACATT
rJMFF002F15+          ATATTTATACAAGTATAACGTGTTTCAAATTGGATTCATCGTTCTCGCAGGGCTGACATT
                      ____________________________________________________________
consensus             ATATTTATACAAGTATAACGTGTTTCAAATTGGATTCATCGTTCTCGCAGGGCTGACATT
 
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rJMSF048I15+          TGTGTATTACTCACTTTTTGGATGGAGACGGAAAAAGCCCACTGGCAGGTTCCAGCTCTC
rJMSF045O05+          TGTGTATTACTCACTTTTTGGATGGAGACGGAAAAAGCCCACTGGCAGGTTCCAGCTCTC
rJMFF001G13+          TGTGTATTACTCACTTTTTGGATGGAGACGGAAAAAGCCCACTGGCAGGTTCCAGCTCTC
rJMFF002F15+          TGTGTATTACTCACTTTTTGGATGGAGACGGAAAAAGCCCACTGGCAGGTTCCAGCTCTC
                      ____________________________________________________________
consensus             TGTGTATTACTCACTTTTTGGATGGAGACGGAAAAAGCCCACTGGCAGGTTCCAGCTCTC
 
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rJMSF048I15+          AAGTTGAGGATTCGGTTGCTACATTAAACAAAGCATCCGCTAACACTTTGGATTTTCTGC
rJMSF045O05+          AAGTTGAGGATTCGGTTGCTACATTAAACAAAGCATCCGCTAACACTTTGGGTTTTCTGC
rJMFF001G13+          AAGTTGAGGATTCGGTTGCTACATTAAACAAAGCATCCGCTAACACTTTGGATTTTCTGC
rJMFF002F15+          AAGTTGAGGATTCGGTTGCTACATTAAACAAAGCATCCGCTAACACTTTGGATTTTCTGC
                      ____________________________________________________________
consensus             AAGTTGAGGATTCGGTTGCTACATTAAACAAAGCATCCGCTAACACTTTGGATTTTCTGC
 
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rJMSF048I15+          CACCTGAGTGAATGCTTGCCTACTTTTGTGTTCTGACATTATTTTCTACCTTTTATATGT
rJMSF045O05+          CACCTGAGTGAATGCTTGCCTACTTTTGTGTTCTGACATTATTTTCTACCTTTTATATGT
rJMFF001G13+          CACCTGAGTGAATGCTTGCCTACTTTTGTGTTCTGACATTATTTTCTACCTTTTATATGT
rJMFF002F15+          CACCTGAGTGAATGCTTGCCTACTTTTGTGTTCTGACATTATTTTCTACCTTTTATATGT
                      ____________________________________________________________
consensus             CACCTGAGTGAATGCTTGCCTACTTTTGTGTTCTGACATTATTTTCTACCTTTTATATGT
 
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rJMSF048I15+          ATATTTGTTTGCGTGTTGTACATCGACATGGCCATGTATTTATCAGCATTTTGGAGCATT
rJMSF045O05+          ATATTTGTTTGCGTGTTGTACATCGACATGGCCATGTATTTATCAGCATTTTGGAGCATT
rJMFF001G13+          ATATTTGTTTGCGTGTTGTACATCGACATGGCCATGTATTTATCAGCATTTTGGAGCATT
rJMFF002F15+          ATATTTGTTTGCGTGTTGTACATCGACATGGCCATGTATTTATCAGCATTTTGGAGCATT
                      ____________________________________________________________
consensus             ATATTTGTTTGCGTGTTGTACATCGACATGGCCATGTATTTATCAGCATTTTGGAGCATT
 
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rJMSF048I15+          GGTTTAGGAAGTGCCTCGTGTGTAGCATATATACATTCTGCTGAAACAAACAATACTCTC
rJMSF045O05+          GGTTTAGGAAGTGCCTCGTGTGTAGCATATATACATTCTGCTGAAACAAACAATACTCTC
rJMFF001G13+          GGTTTAGGAAGTGCCTCGTGTGTAGCATATATACATTCTGCTGAAACAAACAATACTCTC
rJMFF002F15+          GGTTTAGGAAGTGCCTCGTGTGTAGCATATATACATTCTGCTGAAACAAACAATACTCTC
                      ____________________________________________________________
consensus             GGTTTAGGAAGTGCCTCGTGTGTAGCATATATACATTCTGCTGAAACAAACAATACTCTC
 
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rJMSF048I15+          AAAACCTGCTTCTTGTTTCTTGTATTGCGTAGATCTGATCTGAT                
rJMSF045O05+          AAAACCTGCTTCTTGTTTCTTGTATTGCGTAGATCTGATCTGAT                
rJMFF001G13+          AAAACCTGCTTCTTGTTTCTTGTATTGCGTAGATCTGATCTGATTGTTTATCAATCTGCT
rJMFF002F15+          AAAACCTGCTTCTTGTTTCTTGTATTGCGTAGATCTGATCTGATTGTTTATCAATCTGCT
                      ____________________________________________________________
consensus             AAAACCTGCTTCTTGTTTCTTGTATTGCGTAGATCTGATCTGATTGTTTATCAATCTGCT
 
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rJMFF001G13+          CTGTAATAGTAGTACTATTATCAGCAA                                 
rJMFF002F15+          CTGTAATAGTAGTACTATTATCAGCAACAGTGTCATTATACAATTNTGAAGACTTCATTT
                      ____________________________________________________________
consensus             CTGTAATAGTAGTACTATTATCAGCAACAGTGTCATTATACAATTNTGAAGACTTCATTT