Contig 008117:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF015K03-                                                       ACTTTAGTTTTTATTT
JMFF001L04-                                                       ACTTTAGTTTTTATTT
                      ____________________________________________________________
consensus                                                         ACTTTAGTTTTTATTT
 
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JMFF015K03-           CTTACCAAATTCTCTTTTTCCAGGAAGTGCTGTTGTTGTTGTTGTTGTTTGATACTGGTG
JMFF001L04-           CTTACCAAATTCTCTTTTTCCAGGAAGTGCTGTTGTTGTTGTTGTTGTTTGATACTGGTG
                      ____________________________________________________________
consensus             CTTACCAAATTCTCTTTTTCCAGGAAGTGCTGTTGTTGTTGTTGTTGTTTGATACTGGTG
 
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JMFF015K03-           TAAATGGGTGAGCATTCAGTGGTGAATTTTGATCAACTGGTTAAGACGGATGAAGTAGGG
JMFF001L04-           TAAATGGGTGAGCATTCAGTGGTGAATTTTGATCAACTGGTTAAGACGGATGAAGTAGGG
                      ____________________________________________________________
consensus             TAAATGGGTGAGCATTCAGTGGTGAATTTTGATCAACTGGTTAAGACGGATGAAGTAGGG
 
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JMFF015K03-           TCTGGCCTGCCAGTTGATGGGGCAAAGCATATTGAAAAGAAGACAGAAAGTGCAGGGACC
JMFF001L04-           TCTGGCCTGCCAGTTGATGGGGCAAAGCATATTGAAAAGAAGACAGAAAGTGCAGGGACC
                      ____________________________________________________________
consensus             TCTGGCCTGCCAGTTGATGGGGCAAAGCATATTGAAAAGAAGACAGAAAGTGCAGGGACC
 
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JMFF015K03-           TCTTCCAGTGCTGTGGTAGAGGATAAGGTGGTGGGCATGGGGAAAGAGAAAGATATTGAG
JMFF001L04-           TCTTCCAGTGCTGTGGTAGAGGATAAGGTGGTGGGCATGGGGAAAGAGAAAGATATTGAG
                      ____________________________________________________________
consensus             TCTTCCAGTGCTGTGGTAGAGGATAAGGTGGTGGGCATGGGGAAAGAGAAAGATATTGAG
 
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JMFF015K03-           GTGGCAGATGAGGAGGCACCTCTAATTGGTATAAGGGAATGTCGCATCTGCCAAGAGGAG
JMFF001L04-           GTGGCAGATGAGGAGGCACCTCTAATTGGTATAAGGGAATGTCGCATCTGCCAAGAGGAG
                      ____________________________________________________________
consensus             GTGGCAGATGAGGAGGCACCTCTAATTGGTATAAGGGAATGTCGCATCTGCCAAGAGGAG
 
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JMFF015K03-           GATTCTGTGAAGAATTTGGAGACTCCATGTGCTTGTAGTGGCAGTCTCAAGTATGCTCAC
JMFF001L04-           GATTCTGTGAAGAATTTGGAGACTCCATGTGCTTGTAGTGGCAGTCTCAAGTATGCTCAC
                      ____________________________________________________________
consensus             GATTCTGTGAAGAATTTGGAGACTCCATGTGCTTGTAGTGGCAGTCTCAAGTATGCTCAC
 
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JMFF015K03-           AGAAAATGTGTCCAACACTGGTGCAATGAGAAGGGTGACATTACTTGTGAGATCTGTCAT
JMFF001L04-           AGAAAATGTGTCCAACACTGGTGCAATGAGAAGGGTGACATTACTTGTGAGATCTGTCAT
                      ____________________________________________________________
consensus             AGAAAATGTGTCCAACACTGGTGCAATGAGAAGGGTGACATTACTTGTGAGATCTGTCAT
 
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JMFF015K03-           CAGCCTTATCAGCCTGGTTATACGGCTCCTCCTCGATCTCAGCCAGAAGAAACTACCATA
JMFF001L04-           CAGCCTTATCAGCCTGGTTATACGGCTCCTCCTCGATCTCAGCCAGAAGAAACTACCATA
rJMFF015K03+                                             ATCTCAGCCAGAAGAAACTACCATA
rJMFF001L04+                                             ATCTCAGCCAGAAGAAACTACCATA
                      ____________________________________________________________
consensus             CAGCCTTATCAGCCTGGTTATACGGCTCCTCCTCGATCTCAGCCAGAAGAAACTACCATA
 
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JMFF015K03-           GATATCGGAGGATGGCAAATTTCTGGTACGCCCCTGGATTTGCATGATCCTCGCCTTTTG
JMFF001L04-           GATATCGGAGGATGGCAAATTTCTGGTACGCCCCTGGATTTGCATGATCCTCGCCTTTTG
rJMFF015K03+          GATATCGGAGGATGGCAAATTTCTGGTACGCCCCTGGATTTGCATGATCCTCGCCTTTTG
rJMFF001L04+          GATATCGGAGGATGGCAAATTTCTGGTACGCCCCTGGATTTGCATGATCCTCGCCTTTTG
                      ____________________________________________________________
consensus             GATATCGGAGGATGGCAAATTTCTGGTACGCCCCTGGATTTGCATGATCCTCGCCTTTTG
 
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JMFF015K03-           GCAATTGCTGA                                                 
JMFF001L04-           GCAATTGCTGA                                                 
rJMFF015K03+          GCAATTGCTGAGGCAGGACGCCAAATTTTGGAAGCTGAGTATGATGATTATAATGCTACA
rJMFF001L04+          GCAATTGCTGAGGCAGGACGCCAAATTTTGGAAGCTGAGTATGATGATTATAATGCTACA
                      ____________________________________________________________
consensus             GCAATTGCTGAGGCAGGACGCCAAATTTTGGAAGCTGAGTATGATGATTATAATGCTACA
 
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rJMFF015K03+          AATGCAAGTGGTGCTGCATTCTGCCGTTCTGCTGCTTTGATTTTAATGGCTCTTCTGCTA
rJMFF001L04+          AATGCAAGTGGTGCTGCATTCTGCCGTTCTGCTGCTTTGATTTTAATGGCTCTTCTGCTA
                      ____________________________________________________________
consensus             AATGCAAGTGGTGCTGCATTCTGCCGTTCTGCTGCTTTGATTTTAATGGCTCTTCTGCTA
 
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rJMFF015K03+          TTGCGGCATGCTCTGAGTATGACTGACAGTGAAGGAGATGACGAAGATCCATCTGCCCTT
rJMFF001L04+          TTGCGGCATGCTCTGAGTATGACTGACAGTGAAGGAGATGACGAAGATCCATCTGCCCTT
                      ____________________________________________________________
consensus             TTGCGGCATGCTCTGAGTATGACTGACAGTGAAGGAGATGACGAAGATCCATCTGCCCTT
 
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rJMFF015K03+          TTCTCTCTTTTCTTGCTTCGGGTGGTTGGCTTTCTTTTACCATGTTACATCATGGTTTGG
rJMFF001L04+          TTCTCTCTTTTCTTGCTTCGGGTGGTTGGCTTTCTTTTACCATGTTACATCATGGTTTGG
                      ____________________________________________________________
consensus             TTCTCTCTTTTCTTGCTTCGGGTGGTTGGCTTTCTTTTACCATGTTACATCATGGTTTGG
 
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rJMFF015K03+          GCAATCAGTATTTTGCAGCAGCGAAGGCAAAGGCAGGAGGCTGCTGCAGCATTGGCTGCA
rJMFF001L04+          GCAATCAGTATTTTGCAGCAGCGAAGGCAAAGGCAGGAGGCTGCTGCAGCATTGGCTGCA
                      ____________________________________________________________
consensus             GCAATCAGTATTTTGCAGCAGCGAAGGCAAAGGCAGGAGGCTGCTGCAGCATTGGCTGCA
 
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rJMFF015K03+          TCACAGTTTGCATTCGTGGTGCAATCAGCACAAAGAAATGGTGTGCATTTTACTATAGCA
rJMFF001L04+          TCACAGTTTGCATTCGTGGTGCAATCAGCACAAAGAAATGGTGTGCATTTTACTATAGCA
                      ____________________________________________________________
consensus             TCACAGTTTGCATTCGTGGTGCAATCAGCACAAAGAAATGGTGTGCATTTTACTATAGCA
 
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rJMFF015K03+          TCAACCGCACCTCCAGTCCCTGCAGCTCCTGAACACGTGTGAGAAAACTGGGACCAATTT
rJMFF001L04+          TCAACCGCACCTCCAGTCCCTGCAGCTCCTGAACACGTGTGAGAAAACTGGGACCAATTT
                      ____________________________________________________________
consensus             TCAACCGCACCTCCAGTCCCTGCAGCTCCTGAACACGTGTGAGAAAACTGGGACCAATTT
 
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rJMFF015K03+          TAGCGGAACGTTATGAAGATGAGAAGTCTTGGGCCAGGGTTTCAAAAAGAGCTAGGTTGT
rJMFF001L04+          TAGCGGAACGTTATGAAGATGAGAAGTCTTGGGCCAGGGTTTCAAAAAGAGCTAGGTTGT
                      ____________________________________________________________
consensus             TAGCGGAACGTTATGAAGATGAGAAGTCTTGGGCCAGGGTTTCAAAAAGAGCTAGGTTGT
 
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rJMFF015K03+          GTTGTGCCTTGTTGTTGGTAAATTTTAATGGGAGCAATTTTAGCAATAAATGGTACAATT
rJMFF001L04+          GTTGTGCCTTGTTGTTGGTAAATTTTAATGGGAGCAATTTTAGCAATAAATGGTACAATT
                      ____________________________________________________________
consensus             GTTGTGCCTTGTTGTTGGTAAATTTTAATGGGAGCAATTTTAGCAATAAATGGTACAATT
 
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rJMFF015K03+          TTCTTGGTCAATTTTTATATGCATCCTCCCCTGTGATCAGTAATTTG             
rJMFF001L04+          TTCTTGGTCAATTTTTATATGCATCCTCCCCTGTGATCAGTAATTTGGTTATACAATATC
                      ____________________________________________________________
consensus             TTCTTGGTCAATTTTTATATGCATCCTCCCCTGTGATCAGTAATTTGGTTATACAATATC