Contig 008106:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026G15Sequence547008106 (2)ref|XP_009763179.1|6e-39PREDICTED: CDT1-like protein a, chloroplastic [Nicotiana sylvestris]745001122 (2)gb|KDO68466.1|9e-56hypothetical protein CISIN_1g006819mg [Citrus sinensis]
JMSF052D18Sequence678008106 (2)ref|XP_009763179.1|4e-68PREDICTED: CDT1-like protein a, chloroplastic [Nicotiana sylvestris]897018363gb|KCW49939.1|7e-79hypothetical protein EUGRSUZ_K03401 [Eucalyptus grandis]

Alignment

This contig is upended


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JMSF052D18+                                                     TTAATACGAAGATCAGGC
                      ____________________________________________________________
consensus                                                       TTAATACGAAGATCAGGC
 
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JMSF052D18+           TTCATACAGCTCGTGCGTTCATCATGGACGAGGATCTTCGTAACCTCGATGGCTTCAGGT
                      ____________________________________________________________
consensus             TTCATACAGCTCGTGCGTTCATCATGGACGAGGATCTTCGTAACCTCGATGGCTTCAGGT
 
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JMFF026G15+                                                               AACACTCG
JMSF052D18+           AAAATAAACTTCAACTGAGCTAGATGGCTGTGAGAAAACCTCCTGTCGGTTAAACACTCG
                      ____________________________________________________________
consensus             AAAATAAACTTCAACTGAGCTAGATGGCTGTGAGAAAACCTCCTGTCGGTTAAACACTCG
 
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JMFF026G15+           ATTTTGGGACTAATGTTTGTAAATGTTGTCTTTGATCCCTTCATTCGTAGCAGCCGGATA
JMSF052D18+           ATTTTGGGACTAATGTTTGTAAATGTTGTCTTTGATCCCTTCATTCGTAGCAGCCGGATA
                      ____________________________________________________________
consensus             ATTTTGGGACTAATGTTTGTAAATGTTGTCTTTGATCCCTTCATTCGTAGCAGCCGGATA
 
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JMFF026G15+           GAACTATCCAAGCTATTGAAGAATTCACCCAAAATCTCGTACTTTTCCGGCAGCTTTGCT
JMSF052D18+           GAACTATCCAAGCTATTGAAGAATTCACCCAAAATCTCGTACTTTTCCGGCAGCTTTGCT
                      ____________________________________________________________
consensus             GAACTATCCAAGCTATTGAAGAATTCACCCAAAATCTCGTACTTTTCCGGCAGCTTTGCT
 
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JMFF026G15+           GGACCGTCGGACTTCTTAGGCATTGCAGGCGGAGATTCAGGCTGGGAACCAATCTGCCCG
JMSF052D18+           GGACCGTCGGACTTCTTAGGCTTTGCAGGCGGAGATTCAGGCTGGGAACCAATCTGCCCG
                      ____________________________________________________________
consensus             GGACCGTCGGACTTCTTAGGCTTTGCAGGCGGAGATTCAGGCTGGGAACCAATCTGCCCG
 
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JMFF026G15+           GCGGCGGAGCTCAAAAGTGGATCTGCTTGAGATGGCCGTTCCGGATCTGATTTCCGGAGC
JMSF052D18+           GCGGCGGAGCTCAAAAGTGGATCTGCTTGAGATGGCCGTTCCGGATCTGATTTCCGGAGC
                      ____________________________________________________________
consensus             GCGGCGGAGCTCAAAAGTGGATCTGCTTGAGATGGCCGTTCCGGATCTGATTTCCGGAGC
 
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JMFF026G15+           TTTAGCGCCGCCTGTCGGACTTGTTTCAAGGAGAGCGCGGAGTTGCCGTTTCGACTCCGG
JMSF052D18+           TTTAGCGCCGCCTGTCGGACTTGTTTCAAGGAGAGCGCGGAGTTGCCGTTTCGACTCCGG
                      ____________________________________________________________
consensus             TTTAGCGCCGCCTGTCGGACTTGTTTCAAGGAGAGCGCGGAGTTGCCGTTTCGACTCCGG
 
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JMFF026G15+           CGAGGAGCATTGACCGGCTTCTCAGGGGTCTTGGAGCTCCATGGATCCCGGTCCGCCGGA
JMSF052D18+           CGAGGAGCATTGACCGGCTTCTCAGGGGTCTTGGAGCTCCATGGATCCCGGTCCGCCGGA
                      ____________________________________________________________
consensus             CGAGGAGCATTGACCGGCTTCTCAGGGGTCTTGGAGCTCCATGGATCCCGGTCCGCCGGA
 
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JMFF026G15+           GACTTAATCTCCGGCGAAGGATTTGGCTTCGAACTGGAATGCAGAACCTTCTTCGTCTTA
JMSF052D18+           GACTTAATCTCCGGCGAAGGATTTGGCTTCGAACTGGAATGCAGAACCTTCTTCGTCTTA
                      ____________________________________________________________
consensus             GACTTAATCTCCGGCGAAGGATTTGGCTTCGAACTGGAATGCAGAACCTTCTTCGTCTTA
 
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JMFF026G15+           AACGATTCGAGCAACGACGACTCGGCGGAGTCCATTACAAAAATTCACTGTAAAACTCCG
JMSF052D18+           AACGATTCGAGCAACGACGACTCGGCGGAGTCCATTACAAAAATTCACTGTAAAACTCCG
                      ____________________________________________________________
consensus             AACGATTCGAGCAACGACGACTCGGCGGAGTCCATTACAAAAATTCACTGTAAAACTCCG
 
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JMFF026G15+           TTAAGAAACGCTTCTTTATCTTCTTGTCGTTCTTGAGGCTGGGTTTCGGGGCAAGCGAT 
JMSF052D18+           TTAAGAAACGCTTCTTTATCTTCTTGTCGTTCTTGAGGCTGGGTTTCGGGGCAAGCGATC
                      ____________________________________________________________
consensus             TTAAGAAACGCTTCTTTATCTTCTTGTCGTTCTTGAGGCTGGGTTTCGGGGCAAGCGATC