Contig 008102:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001N09Sequence252008102 (6)ref|XP_009800499.1|8e-37PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Nicotiana sylvestris]615008102 (6)ref|XP_009800499.1|2e-50PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Nicotiana sylvestris]
JMSF007C04Sequence359010577 (3)ref|XP_011083410.1|3e-67PREDICTED: probable ribosome biogenesis protein RLP24 isoform X2 [Sesamum indic589008102 (6)ref|XP_009800499.1|2e-50PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Nicotiana sylvestris]
JMSF026J10Sequence659008102 (6)ref|XP_009800499.1|3e-50PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Nicotiana sylvestris]628008102 (6)ref|XP_009800499.1|2e-50PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Nicotiana sylvestris]
JMSF051M14Sequence684008102 (6)ref|XP_009800499.1|2e-49PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF026J10+                                              GAGTTCCCAAATTCTTGCATATGG
rJMSF001N09+                                                              GCATATGG
rJMSF007C04+                                                          TCTTGCATATGG
JMSF001N09-                                                               GCATATGG
JMSF026J10-                                               GAGTTCCCAAATTCTTGCATATGG
JMSF051M14-                                               GAGTTCCCAAATTCTTGCATATGG
                      ____________________________________________________________
consensus                                                 GAGTTCCCAAATTCTTGCATATGG
 
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rJMSF026J10+          ATAACTTCCAATCCCAAACCCGGAAAGGCTTATTCAAATGCCAGAAGAAGAGGCTAACCC
rJMSF001N09+          ATAACTTCCAATCCCAAACCCGGAAAGGCTTATTCAAATGCCAGAAGAAGAGGCTAACCC
rJMSF007C04+          ATAACTTCCAATCCCAAACCCGGAAAGGCTTATTCAAATGCCAGAAGAAGAGGCTAACCC
JMSF001N09-           ATAACTTCCAATCCCAAACCCGGAAAGGCTTATTCAAATGCCAGAAGAAGAGGCTAACCC
JMSF026J10-           ATAACTTCCAATCCCAAACCCGGAAAGGCTTATTCAAATGCCAGAAGAAGAGGCTAACCC
JMSF051M14-           ATAACTTCCAATCCCAAACCCGGAAAGGCTTATTCAAATGCCAGAAGAAGAGGCTAACCC
                      ____________________________________________________________
consensus             ATAACTTCCAATCCCAAACCCGGAAAGGCTTATTCAAATGCCAGAAGAAGAGGCTAACCC
 
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rJMSF026J10+          AGGATCAAGTGAGGCTGTTAGAGGGGAGCTTTAACGTGAATAACAAGCTGGACGCGGATA
rJMSF001N09+          AGGATCAAGTGAGGCTGTTAGAGGGGAGCTTTAACGTGAATAACAAGCTGGACGCGGATA
rJMSF007C04+          AGGATCAAGTGAGGCTGTTAGAGGGGAGCTTTAACGTGAATAACAAGCTGGACGCGGATA
JMSF001N09-           AGGATCAAGTGAGGCTGTTAGAGGGGAGCTTTAACGTGAATAACAAGCTGGACGCGGATA
JMSF026J10-           AGGATCAAGTGAGGCTGTTAGAGGGGAGCTTTAACGTGAATAACAAGCTGGACGCGGATA
JMSF051M14-           AGGATCAAGTGAGGCTGTTAGAGGGGAGCTTTAACGTGAATAACAAGCTGGACGCGGATA
                      ____________________________________________________________
consensus             AGGATCAAGTGAGGCTGTTAGAGGGGAGCTTTAACGTGAATAACAAGCTGGACGCGGATA
 
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rJMSF026J10+          GCAAGTCCCAGCTGGCGCAGCAGCTGGGATTGCCACCGAGGCAGATTGCAATTTGGTATC
rJMSF001N09+          GCAAGTCCCAGCTGGCGCAGCAGCTGGGATTGCCACCGAGGCAGATTGCAATTTGGTATC
rJMSF007C04+          GCAAGTCCCAGCTGGCGCAGCAGCTGGGATTGCCACCGAGGCAGATTGCAATTTGGTATC
JMSF001N09-           GCAAGTCCCAGCTGGCGCAGCAGCTGGGATTGCCACCGAGGCAGATTGCAATTTGGTATC
JMSF026J10-           GCAAGTCCCAGCTGGCGCAGCAGCTGGGATTGCCACCGAGGCAGATTGCAATTTGGTATC
JMSF051M14-           GCAAGTCCCAGCTGGCGCAGCAGCTGGGATTGCCACCGAGGCAGATTGCAATTTGGTATC
                      ____________________________________________________________
consensus             GCAAGTCCCAGCTGGCGCAGCAGCTGGGATTGCCACCGAGGCAGATTGCAATTTGGTATC
 
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rJMSF026J10+          AGAACAAGCGAGCGCGGCGCAAGAGCCAGAGCCTGGAGGTGGACCACAAGGCCATGCATG
rJMSF001N09+          AGAACAAGCGAGCGCGGCGCAAGAGCCAGAGCCTGGAGGTGGACCACAAGGCCATGCATG
rJMSF007C04+          AGAACAAGCGAGCGCGGCGCAAGAGCCAGAGCCTGGAGGTGGACCACAAGGCCATGCATG
JMSF001N09-           AGAACAAGCGAGCGCGGCGCAAGAGCCAGAGCCTGGAGGTGGACCACAAGGCCATGCATG
JMSF026J10-           AGAACAAGCGAGCGCGGCGCAAGAGCCAGAGCCTGGAGGTGGACCACAAGGCCATGCATG
JMSF051M14-           AGAACAAGCGAGCGCGGCGCAAGAGCCAGAGCCTGGAGGTGGACCACAAGGCCATGCATG
                      ____________________________________________________________
consensus             AGAACAAGCGAGCGCGGCGCAAGAGCCAGAGCCTGGAGGTGGACCACAAGGCCATGCATG
 
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rJMSF026J10+          AGAGGCTGGAGGAGGTTTTGTCGGATAACGAGCGGCTGAGAGAAGAGGTGCAGAAGGCGC
rJMSF001N09+          AGAGGCTGGAGGAGGTTTTGTCGGATAACGAGCGGCTGAGAGAAGAGGTGCAGAAGGCGC
rJMSF007C04+          AGAGGCTGGAGGAGGTTTTGTCGGATAACGAGCGGCTGAGAGAAGAGGTGCAGAAGGCGC
JMSF001N09-           AG                                                          
JMSF026J10-           AGAGGCTGGAGGAGGTTTTGTCGGATAACGAGCGGCTGAGAGAAGAGGTGCAGAAGGCGC
JMSF051M14-           AGAGGCTGGAGGAGGTTTTGTCGGATAACGAGCGGCTGAGAGAAGAGGTGCAGAAGGCGC
                      ____________________________________________________________
consensus             AGAGGCTGGAGGAGGTTTTGTCGGATAACGAGCGGCTGAGAGAAGAGGTGCAGAAGGCGC
 
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rJMSF026J10+          AGGAGATGCTGCAGGTGGCGGCGGCGGTGGCGCCCTACTCCTGCAGCTCCGGTGATGAAG
rJMSF001N09+          AGGAGATGCTGCAGGTGGCGGCGGCGGTGGCGCCCTACTCCTGCAGCTCCGGTGATGAAG
rJMSF007C04+          AGGAGATGCTGCAGGTGGCGGCGGCGGTGGCGCCCTACTCCTGCAGCTCCGGTGATGAAG
JMSF026J10-           AGGAGATGCTGCAGGTGGCGGCGGCGGTGGCGCCCTACTCCTGCAGCTCCGGTGATGAAG
JMSF051M14-           AGGAGATGCTGCAGGTGGCGGCGGCGGTGGCGCCCTACTCCTGCAGCTCCGGTGATGAAG
                      ____________________________________________________________
consensus             AGGAGATGCTGCAGGTGGCGGCGGCGGTGGCGCCCTACTCCTGCAGCTCCGGTGATGAAG
 
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rJMSF026J10+          CCGGTGGGAGCTTGGGTTTGCTTCATGGTTCGTCCAAAGAGCTGTATGCTTGCTTGCTGG
rJMSF001N09+          CCGGTGGGAGCTTGGGTTTGCTTCATGGTTCGTCCAAAGAGCTGTATGCTTGCTTGCTGG
rJMSF007C04+          CCGGTGGGAGCTTGGGTTTGCTTCATGGTTCGTCCAAAGAGCTGTATGCTTGCTTGCTGG
JMSF026J10-           CCGGTGGGAGCTTGGGTTTGCTTCATGGTTCGTCCAAAGAGCTGTATGCTTGCTTGCTGG
JMSF051M14-           CCGGTGGGAGCTTGGGTTTGCTTCATGGTTCGTCCAAAGAGCTGTATCCTTGCTTGCTGG
                      ____________________________________________________________
consensus             CCGGTGGGAGCTTGGGTTTGCTTCATGGTTCGTCCAAAGAGCTGTATGCTTGCTTGCTGG
 
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rJMSF026J10+          ATGAGCACGAGAGCCAGTTTGGAACCTCGCCGGCTGATTTATTGCACAACTTCTTTGCTC
rJMSF001N09+          ATGAGCACGAGAGCCAGTTTGGAACCTCGCCGGCTGATTTATTGCACAACTTCTTTGCTC
rJMSF007C04+          ATGAGCACGAGAGCCAGTTTGGAACCTCGCCGGCTGATTTATTGCACAACTTCTTTGCTC
JMSF026J10-           ATGAGCACGAGAGCCAGTTTGGAACCTCGCCGGCTGATTTATTGCACAACTTCTTTGCTC
JMSF051M14-           ATGAGCACGAGAGCCAGTTTGGAACCTCGCCGGCTGATTTATTGCACAACTTCTTTGCTC
                      ____________________________________________________________
consensus             ATGAGCACGAGAGCCAGTTTGGAACCTCGCCGGCTGATTTATTGCACAACTTCTTTGCTC
 
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rJMSF026J10+          CACCTGGATTATCTTAATTAATACTAGTTTAATTTAATTTAATTTGGTGGTTGGTTAGAA
rJMSF001N09+          CACCTGGATTATCTTAATTAATACTAGTTTAATTTAATTTAATTTGGTGGTTGGTTAGAA
rJMSF007C04+          CACCTGGATTATCTTAATTAATACTAGTTTAATTTAATTTAATTTGGTGGTTGGTTAGAA
JMSF026J10-           CACCTGGATTATCTTAATTAATACTAGTTTAATTTAATTTAATTTGGTGGTTGGTTAGAA
JMSF051M14-           CACCTGGATTATCTTAATTAATACTAGTTTAATTTAATTTAATTTGGTGGTTGGTTAGAA
                      ____________________________________________________________
consensus             CACCTGGATTATCTTAATTAATACTAGTTTAATTTAATTTAATTTGGTGGTTGGTTAGAA
 
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rJMSF026J10+          TTTTACCATCTGTCGTACGTTAATTACTGTCTGGCTTGGCTTTTGCAGCTGGACAATCAA
rJMSF001N09+          TTTTACCATCTGTCGTACGTTAATTACTGTCTGGCTTGGCTTTTGCAGCTGGACAATCAA
rJMSF007C04+          TTTTACCATCTGTCGTACGTTAATTACTGTCTGGCTT                       
JMSF026J10-           TTTTACCATCTGTCGTACGTTAATTACTGTCTGGCTTGGCTTTTGCAGCTGGACAATCAA
JMSF051M14-           TTTTACCATCTGTCGTACGTTAATTACTGTCTGGCTTGGCTTTTGCAGCTGGACAATCAA
                      ____________________________________________________________
consensus             TTTTACCATCTGTCGTACGTTAATTACTGTCTGGCTTGGCTTTTGCAGCTGGACAATCAA
 
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rJMSF026J10+          GTCT                                                        
rJMSF001N09+          GTCT                                                        
JMSF026J10-           GTCTGTGTAAAGTAAATAATTGTCACATAATGGAA                         
JMSF051M14-           GTCTGTGTAAAGTAAATAATTGTCACATAATGGAAATTTACCTTTACTCCAAAAAAAAAA
                      ____________________________________________________________
consensus             GTCTGTGTAAAGTAAATAATTGTCACATAATGGAAATTTACCTTTACTCCAAAAAAAAAA