| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011F02 | Sequence | 503 | 008101 (8) | emb|CDO99257.1| | 3e-22 | unnamed protein product [Coffea canephora] | 743 | 008101 (8) | ref|XP_008224465.1| | 3e-36 | PREDICTED: polyubiquitin-like [Prunus mume] |
| JMSF014M01 | Sequence | 249 | 008101 (8) | ref|XP_009781027.1| | 6e-06 | PREDICTED: polyubiquitin-like, partial [Nicotiana sylvestris] | 798 | 008101 (8) | ref|XP_008224465.1| | 5e-41 | PREDICTED: polyubiquitin-like [Prunus mume] |
| JMSF019L03 | Sequence | 573 | 008101 (8) | ref|XP_009590175.1| | 8e-34 | PREDICTED: polyubiquitin-like [Nicotiana tomentosiformis] ref|XP_009590176.1| PR | 789 | 008101 (8) | ref|XP_008224465.1| | 4e-37 | PREDICTED: polyubiquitin-like [Prunus mume] |
| JMSF051K11 | Sequence | 694 | 008101 (8) | ref|XP_009590175.1| | 2e-37 | PREDICTED: polyubiquitin-like [Nicotiana tomentosiformis] ref|XP_009590176.1| PR | 801 | 008101 (8) | emb|CDO99257.1| | 2e-29 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF011F02- GGGTT
rJMSF019L03- GGGTT
rJMSF051K11- AGGGTT
____________________________________________________________
consensus AGGGTT
. : . : . : . : . : . :
rJMFF011F02- TTTATGGCATAACCATAGAGAAGAGAGCCGTATGTAACAGCACCCCATCAAGAAAAAGAA
rJMSF019L03- TTTATGGCATAACCATAGAGAAGAGAGCCGTATGTAACAGCACCCCATCAAGAAAAAGAA
rJMSF051K11- TTTATGGCATAACCATAGAGAAGAGAGCCGTATGTAACAGCACCCCATCAAGAAAAAGAA
rJMSF014M01- ACCATAGAGAAGAGAGCCGTATGTAACAGCACCCCATCAAGAAAAAGAA
____________________________________________________________
consensus TTTATGGCATAACCATAGAGAAGAGAGCCGTATGTAACAGCACCCCATCAAGAAAAAGAA
. : . : . : . : . : . :
rJMFF011F02- CAGCAAGCTAAGCATTCATCAATTACAGACCAACCAATCTTTTGTTTCCTATCTTAAGAG
rJMSF019L03- CAGCAAGCTAAGCATTCATCAATTACAGACCAACCAATCTTTTGTTTCCTATCTTAAGAG
rJMSF051K11- CAGCAAGCTAAGCATTCATCAATTACAGACCAACCAATCTTTTGTTTCCTATCTTAAGAG
rJMSF014M01- CAGCAAGCTAAGCATTCATCAATTACAGACCAACCAATCTTTTGTTTCCTATCTTAAGAG
____________________________________________________________
consensus CAGCAAGCTAAGCATTCATCAATTACAGACCAACCAATCTTTTGTTTCCTATCTTAAGAG
. : . : . : . : . : . :
rJMFF011F02- CTAATATTAAACTGTTGGGAAATAGCTGCAGTACAGTTGCAGAAAGCTAAGTCACATGAA
rJMSF019L03- CTAATATTAAACTGTTGGGAAATAGCTGCAGTACAGTTGCAGAAAGCTAAGTCACATGAA
rJMSF051K11- CTAATATTAAACTGTTGGGAAATAGCTGCAGTACAGTTGCAGAAAGCTAAGTCACATGAA
rJMSF014M01- CTAATATTAAACTGTTGGGAAATAGCTGCAGTACAGTTGCAGAAAGCTAAGTCACATGAA
____________________________________________________________
consensus CTAATATTAAACTGTTGGGAAATAGCTGCAGTACAGTTGCAGAAAGCTAAGTCACATGAA
. : . : . : . : . : . :
rJMFF011F02- CTAACTTTGCTGACAACTGAATGTTTGAGTCTTTCCGGAGTCCATAGCTTGCCAATTCCT
rJMSF019L03- CTAACTTTGCTGACAACTGAATGTTTGAGTCTTTCCGGAGTCCATAGCTTGCCAATTCCT
rJMSF051K11- CTAACTTTGCTGACAACTGAATGTTTGAGTCTTTCCGGAGTCCATAGCTTGCCAATTCCT
rJMSF014M01- CTAACTTTGCTGACAACTGAATGTTTGAGTCTTTCCGGAGTCCATAGCTTGCCAATTCCT
____________________________________________________________
consensus CTAACTTTGCTGACAACTGAATGTTTGAGTCTTTCCGGAGTCCATAGCTTGCCAATTCCT
. : . : . : . : . : . :
rJMFF011F02- GGGAATCATCCAGGGTTTTCCCCTCAAACACCAGCTTCTGCACATGAACTGGCAGCCCCA
rJMSF019L03- GGGAATCATCCAGGGTTTTCCCCTCAAACACCAGCTTCTGCACATGAACTGGCAGCCCCA
rJMSF051K11- GGGAATCATCCAGGGTTTTCCCCTCAAACACCAGCTTCTGCACATGAACTGGCAGCCCCA
rJMSF014M01- GGGAATCATCCAGGGTTTTCCCCTCAAACACCAGCTTCTGCACATGAACTGGCAGCCCCA
____________________________________________________________
consensus GGGAATCATCCAGGGTTTTCCCCTCAAACACCAGCTTCTGCACATGAACTGGCAGCCCCA
. : . : . : . : . : . :
rJMFF011F02- ACGTCTTAAAGATGGCTTCTTTCAGATTTTTAACCGATTCCCATAAGAACACTTGAAAGC
rJMSF019L03- ACGTCTTAAAGATGGCTTCTTTCAGATTTTTAACCGATTCCCATAAGAACACTTGAAAGC
rJMSF051K11- ACGTCTTAAAGATGGCTTCTTTCAGATTTTTAACCGATTCCCATAAGAACACTTGAAAGC
rJMSF014M01- ACGTCTTAAAGATGGCTTCTTTCAGATTTTTAACCGATTCCCATAAGAACACTTGAAAGC
____________________________________________________________
consensus ACGTCTTAAAGATGGCTTCTTTCAGATTTTTAACCGATTCCCATAAGAACACTTGAAAGC
. : . : . : . : . : . :
rJMFF011F02- ATGTGCTTTTCTCACCCCATTTGATGAATATCTGAGTAGCTGGTGGCACGATCTCCAAGA
rJMSF019L03- ATGTGCTTTTCTCACCCCATTTGATGAATATCTGAGTAGCTGGTGGCACGATCTCCAAGA
rJMSF051K11- ATGTGCTTTTCTCACCCCATTTGATGAATATCTGAGTAGCTGGTGGCACGATCTCCAAGA
rJMSF014M01- ATGTGCTTTTCTCACCCCATTTGATGAATATCTGAGTAGCTGGTGGCACGATCTCCAAGA
____________________________________________________________
consensus ATGTGCTTTTCTCACCCCATTTGATGAATATCTGAGTAGCTGGTGGCACGATCTCCAAGA
. : . : . : . : . : . :
rJMFF011F02- TGGACCCATCCACGATGTTATAATATGACACAGTCTTTGAATCCTTCAGCTGCTTTTCTC
rJMSF019L03- TGGACCCATCCACGATGTTATAATATGACACAGTCTTTGAATCCTTCAGCTGCTTTTCTC
rJMSF051K11- TGGACCCATCCACGATGTTATAATATGACACAGTCTTTGAATCCTTCAGCTGCTTTTCTC
rJMSF014M01- TGGACCCATCCACGATGTTATAATATGACACAGTCTTTGAATCCTTCAGCTGCTTTTCTC
____________________________________________________________
consensus TGGACCCATCCACGATGTTATAATATGACACAGTCTTTGAATCCTTCAGCTGCTTTTCTC
. : . : . : . : . : . :
rJMFF011F02- CAAATGCAAGACTCATCACTGGGTACCCAACTTTGCTCTCAACCACGCTTTTCACGTCCA
rJMSF019L03- CAAATGCAAGACTCATCACTGGGTACCCAACTTTGCTCTCAACCACGCTTTTCACGTCCA
rJMSF051K11- CAAATGCAAGACTCATCACTGGGTACCCAACTTTGCTCTCAACCACGCTTTTCACGTCCA
rJMSF014M01- CAAATGCAAGACTCATCACTGGGTACCCAACTTTGCTCTCAACCACGCTTTTCACGTCCA
____________________________________________________________
consensus CAAATGCAAGACTCATCACTGGGTACCCAACTTTGCTCTCAACCACGCTTTTCACGTCCA
. : . : . : . : . : . :
rJMFF011F02- GAATGGTGTACAACATCCTAAGCTCTGTCACCACAGTTTCTGCCGTTAATGTTTTCACTG
rJMSF019L03- GAATGGTGTACAACATCCTAAGCTCTGTCACCACAGTTTCTGCCGTTAATGTTTTCACTG
rJMSF051K11- GAATGGTGTACAACATCCTAAGCTCTGTCACCA-AGTTTCTGCCGTTAATGTTTTCACTG
rJMSF014M01- GAATGGTGTACAACATCCTAAGCTCTGTCACCACAGTTTCTGCCGTTAATGTTTTCACTG
JMSF051K11+ AGTTTCTGCCGTTAATGTTTTCACTG
____________________________________________________________
consensus GAATGGTGTACAACATCCTAAGCTCTGTCACCACAGTTTCTGCCGTTAATGTTTTCACTG
. : . : . : . : . : . :
rJMFF011F02- AAACCTTCAAGGTATCCCTGGGGTTAGAGATCATGTGAAGAAGCCGCGTAGAATTTGAAC
rJMSF019L03- AAACCTTCAAGGTATCCCTGGGGTTAGAGATCATGTGAAGAAGCCGCGTAGAATTTGAAC
rJMSF051K11- AAACCTTCAAGGTATCCCTGGGGTTAGAGATCATGTGAAGAAGCCGCGTAGAATTTGAAC
rJMSF014M01- AAACCTTCAAGGTATCCCTGGGGTTAGAGATCATGTGAAGAAGCCGCGTAGAATTTGAAC
JMSF019L03+ TAGAGATCATGTGAAGAAGCCGCGTAGAATTTGAAC
JMSF051K11+ AAACCTTCAAGGTATCCCTGGGGTTAGAGATCATGTGAAGAAGCCGCGTAGAATTTGAAC
____________________________________________________________
consensus AAACCTTCAAGGTATCCCTGGGGTTAGAGATCATGTGAAGAAGCCGCGTAGAATTTGAAC
. : . : . : . : . : . :
rJMFF011F02- CCCCTATGATCTCAAGAAACGCTAGAGTTTTATCCTCTTCCACCGGCTTTCCATTGTAAA
rJMSF019L03- CCCCTATGATCTCAAGAAACGCTAGAGTTTTATCCTCTTCCACCGGCTTTCCATTGTAAA
rJMSF051K11- CCCCTATGATCTCAAGAAACGCTAGAGTTTTATCCTCTTCCACCGGCTTTCCATTGTAAA
rJMSF014M01- CCCCTATGATCTCAAGAAACGCTAGAGTTTTATCCTCTTCCACCGGCTTTCCATTGTAAA
JMSF019L03+ CCCCTATGATCTCAAGAAACGCTAGAGTTTTATCNTCTTCCACCGGCTTTCCATTGTAAA
JMSF051K11+ CCCCTATGATCTCAAGAAACGCTAGAGTTTTATCCTCTTCCACCGGCTTTCCATTGTAAA
____________________________________________________________
consensus CCCCTATGATCTCAAGAAACGCTAGAGTTTTATCCTCTTCCACCGGCTTTCCATTGTAAA
. : . : . : . : . : . :
rJMFF011F02- ACAGAGTGTACTGATCGG
rJMSF019L03- ACAGAGTGTACTGATCGGAAGGNA-GNTTTCTTTGGCCTCGATATATGATTTGACAGTCT
rJMSF051K11- ACAGAGTGTACTGATCGGAAGGGATGTTTTCTTTGGCCTCGATATATGATTTGACAGTCT
rJMSF014M01- ACAGAGTGTACTGATCGGAAGGGATGTTTTCTTTGGCCTCGATATATGATTTGACAGTCT
JMSF019L03+ ACAGAGTGTACTGATCGGAAGGGATGTTTTCTTTGGCCTCGATATATGATTTGACAGTCT
JMFF011F02+ TTGGCCTCGATATATGATTTGACAGTCT
JMSF051K11+ ACAGAGTGTACTGATCGGAAGGGATGTTTTCTTTGGCCTCGATATATGATTTGACAGTCT
____________________________________________________________
consensus ACAGAGTGTACTGATCGGAAGGGATGTTTTCTTTGGCCTCGATATATGATTTGACAGTCT
. : . : . : . : . : . :
rJMSF019L03- TGATG
rJMSF051K11- TGATGGTGTCTTGAGC
rJMSF014M01- TGATGGTGTCTTGAGCTCTCACGTCCACC
JMSF019L03+ TGATGGTGTCTTGAGCTCTCACGTCCACCATTACGGTTCTCTTGGCAGAGGGGATCTTGA
JMFF011F02+ TGATGGTGTCTTGAGCTCTCACGTCCACCATTACGGTTCTCTTGGCAGAGGGGATCTTGA
JMSF051K11+ TGATGGTGTCTTGAGCTCTCACGTCCACCATTACGGTTCTCTTGGCAGAGGGGATCTTGA
____________________________________________________________
consensus TGATGGTGTCTTGAGCTCTCACGTCCACCATTACGGTTCTCTTGGCAGAGGGGATCTTGA
. : . : . : . : . : . :
JMSF019L03+ CAGACAACCTTAATGGCACCGAGTTTTCATCGTAAGCGTTGAGGGTGGTGTTGCCATAGA
JMFF011F02+ CAGACAACCTTAATGGCACCGAGTTTTCATCGTAAGCGTTGAGGGTGGTGTTGCCATAGA
JMSF051K11+ CAGACAACCTTAATGGCACCGAGTTTTCATCGTAAGCGTTGAGGGTGGTGTTGCCATAGA
____________________________________________________________
consensus CAGACAACCTTAATGGCACCGAGTTTTCATCGTAAGCGTTGAGGGTGGTGTTGCCATAGA
. : . : . : . : . : . :
JMSF019L03+ TGCCACAATCAACAAGCCTTTTGTCATTCTCGAGGCGTATGCCGTCCAAGAAGAGGTGTT
JMFF011F02+ TGCCACAATCAACAAGCCTTTTGTCATTCTCGAGGCGTATGCCGTCCAAGAAGAGGTGTT
JMSF014M01+ TCCAAGAAGAGGTGTT
JMSF051K11+ TGCCACAATCAACAAGCCTTTTGTCATTCTCGAGGCGTATGCCGTCCAAGAAGAGGTGTT
____________________________________________________________
consensus TGCCACAATCAACAAGCCTTTTGTCATTCTCGAGGCGTATGCCGTCCAAGAAGAGGTGTT
. : . : . : . : . : . :
JMSF019L03+ GGAGGCATTCTTGTATGCCTTCCTCTTGGCTTAACAAGGTTTTCAGTCTGCCAACGGTCT
JMFF011F02+ GGAGGCATTCTTGTATGCCTTCCTCTTGGCTTAACAAGGTTTTCAGTCTGCCAACGGTCT
JMSF014M01+ GGAGGCATTCTTGTATGCCTTCCTCTNGGCTTAACAAGGTTTTCAGTCTGCCAACGGTCT
JMSF051K11+ GGAGGCATTCTTGTATGCCTTCCTCTTGGCTTAACAAGGTTTTCAGTCTGCCAACGGTCT
____________________________________________________________
consensus GGAGGCATTCTTGTATGCCTTCCTCTTGGCTTAACAAGGTTTTCAGTCTGCCAACGGTCT
. : . : . : . : . : . :
JMSF019L03+ CGGATTTGTTAATCTTTACACTCACAGTTTTAGTAATCCTCAAAGATATGTTTATCTCTT
JMFF011F02+ CGGATTTGTTAATCTTTACACTCACAGTTTTAGTAATCCTCAAAGATATGTTTATCTCTT
JMSF014M01+ CGGATTTGTTAATCTTTACACTCACAGTTTTAGTAATCCTCAAAGATATGTTTATCTCTT
JMSF051K11+ CGGATTTGTTAATCTTTACACTCACAGTTTTAGTAATCCTCAAAGATATGTTTATCTCTT
____________________________________________________________
consensus CGGATTTGTTAATCTTTACACTCACAGTTTTAGTAATCCTCAAAGATATGTTTATCTCTT
. : . : . : . : . : . :
JMSF019L03+ CGCCTTCCTGTTGTGCGGTGGGATTAGAGATCATTTCGTCTGACGCTTCCATGGAAAGAA
JMFF011F02+ CGCCTTCCNGTTGTGCGGTGGGATTAGAGATCATTTCGTCTGACGCTTCCATGGAAAGAA
JMSF014M01+ CGCCTTCCTGTTGTGCGGTGGGATTAGAGATCATTTCGTCTGACGCTTCCATGGAAAGAA
JMSF051K11+ CGCCTTCCTGTTGTGCGGTGGGATTAGAGATCATTTCGTCTGACGCTTCCATGGAAAGAA
____________________________________________________________
consensus CGCCTTCCTGTTGTGCGGTGGGATTAGAGATCATTTCGTCTGACGCTTCCATGGAAAGAA
. : . : . : . : . : . :
JMSF019L03+ TTCGGAAGAGTACCAATTTCGACACCGTAAGAACTAAAATGCAGTAACAG
JMFF011F02+ TTCGGAAGAGTACCAATTTCGACACCGTAAGAACTAAAATGCAGTAACAGTCACTGCGTT
JMSF014M01+ TTCGGAAGAGTACCAATTTCGACACCGTAAGAACTAAAATGCAGTAACAG
JMSF051K11+ TTCGGAAGAGTACCAATTTCGACACCGTAAGAACTAAAATGCAGTAACAGTCACTGCGTT
____________________________________________________________
consensus TTCGGAAGAGTACCAATTTCGACACCGTAAGAACTAAAATGCAGTAACAGTCACTGCGTT
. : . : . : . : . : . :
JMFF011F02+ GAGCGGTCGCTTGATTATTAATTTTCCTTGGAAGTTCGAAACTGGAAAGGC
JMSF051K11+ GAGCGGTCGCTTGATTATTAATTTTCCTTGGAAGTTCGAAACTGGAAAGGCTAACACTCC
____________________________________________________________
consensus GAGCGGTCGCTTGATTATTAATTTTCCTTGGAAGTTCGAAACTGGAAAGGCTAACACTCC