Contig 008096:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002A02Sequence250008096 (4)652008096 (4)ref|XP_006436764.1|5e-06hypothetical protein CICLE_v10033202mg [Citrus clementina] ref|XP_006436765.1| h
JMSF051A11Sequence708008096 (4)ref|XP_006436764.1|6e-06hypothetical protein CICLE_v10033202mg [Citrus clementina] ref|XP_006436765.1| h651008096 (4)ref|XP_006436764.1|4e-06hypothetical protein CICLE_v10033202mg [Citrus clementina] ref|XP_006436765.1| h

Alignment

This contig is upended


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JMSF002A02-                       GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
rJMSF051A11+                      GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
rJMSF002A02+                      GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
JMSF051A11-                       GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
                      ____________________________________________________________
consensus                         GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
 
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JMSF002A02-           TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
rJMSF051A11+          TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
rJMSF002A02+          TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
JMSF051A11-           TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
                      ____________________________________________________________
consensus             TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
 
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JMSF002A02-           AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
rJMSF051A11+          AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
rJMSF002A02+          AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
JMSF051A11-           AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
                      ____________________________________________________________
consensus             AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
 
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JMSF002A02-           GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
rJMSF051A11+          GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
rJMSF002A02+          GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
JMSF051A11-           GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
                      ____________________________________________________________
consensus             GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
 
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JMSF002A02-           CAGAACTGAGCTCTTCAGGTCT                                      
rJMSF051A11+          CAGAACTGAGCTCTTCAGGTCTCAACTGATTTCAATTTCGTATCCCCGGGCTCCAAATCC
rJMSF002A02+          CAGAACTGAGCTCTTCAGGTCTCAACTGATTTCAATTTCGTATCCCCGGGCTCCAAATCC
JMSF051A11-           CAGAACTGAGCTCTTCAGGTCTCAACTGATTTCAATTTCGTATCCCCGGGCTCCAAATCC
                      ____________________________________________________________
consensus             CAGAACTGAGCTCTTCAGGTCTCAACTGATTTCAATTTCGTATCCCCGGGCTCCAAATCC
 
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rJMSF051A11+          TCCAAATGATGGGCCTGTGTGCAATGGCCATGCATGATTGATATGATGGGAGCTAATGTC
rJMSF002A02+          TCCAAATGATGGGCCTGTGTGCAATGGCCATGCATGATTGATATGATGGGAGCTAATGTC
JMSF051A11-           TCCAAATGATGGGCCTGTGTGCAATGGCCATGCATGATTGATATGATGGGAGCTAATGTC
                      ____________________________________________________________
consensus             TCCAAATGATGGGCCTGTGTGCAATGGCCATGCATGATTGATATGATGGGAGCTAATGTC
 
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rJMSF051A11+          TGCTATGGATGACTGTCAATGAAGCATTTCCATTTCCATTTCCATTTCTGTTGTAGCATC
rJMSF002A02+          TGCTATGGATGACTGTCAATGAAGCATTTCCATTTCCATTTCCATTTCTGTTGTAGCATC
JMSF051A11-           TGCTATGGATGACTGTCAATGAAGCATTTCCATTTCCATTTCCATTTCTGTTGTAGCATC
                      ____________________________________________________________
consensus             TGCTATGGATGACTGTCAATGAAGCATTTCCATTTCCATTTCCATTTCTGTTGTAGCATC
 
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rJMSF051A11+          TTGAACTTTCTCATGCTCTAGTTATGCTGACCAGAAAGGCGAATACCAAAATGTAGTATT
rJMSF002A02+          TTGAACTTTCTCATGCTCTAGTTATGCTGACCAGAAAGGCGAATACCAAAATGTAGTATT
JMSF051A11-           TTGAACTTTCTCATGCTCTAGTTATGCTGACCAGAAAGGCGAATACCAAAATGTAGTATT
                      ____________________________________________________________
consensus             TTGAACTTTCTCATGCTCTAGTTATGCTGACCAGAAAGGCGAATACCAAAATGTAGTATT
 
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rJMSF051A11+          GAACTTGCATGTGGATGGATACTTGTAACTTTGTCCATTGTCTCACATAATTCTGTTGAT
rJMSF002A02+          GAACTTGCATGTGGATGGATACTTGTAACTTTGTCCATTGTCTCACATAATTCTGTTGAT
JMSF051A11-           GAACTTGCATGTGGATGGATACTTGTAACTTTGTCCATTGTCTCACATAATTCTGTTGAT
                      ____________________________________________________________
consensus             GAACTTGCATGTGGATGGATACTTGTAACTTTGTCCATTGTCTCACATAATTCTGTTGAT
 
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rJMSF051A11+          GTCATTTGTATGTTACAGTGCACCATATTTCTCTTGTTAAATCCTTACAGATTCCAGTAT
rJMSF002A02+          GTCATTTGTATGTTACAGTGCACCATATTTCTCTTGTTAAATCCTTACAGATTCCAGTAT
JMSF051A11-           GTCATTTGTATGTTACAGTGCACCATATTTCTCTTGTTAAATCCTTACAGATTCCAGTAT
                      ____________________________________________________________
consensus             GTCATTTGTATGTTACAGTGCACCATATTTCTCTTGTTAAATCCTTACAGATTCCAGTAT
 
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rJMSF051A11+          AGTTTTTGAGGATATGTAAACCTTTTGAAATTTACTTCTAAGGTTGTGCAAGTAAACTT 
rJMSF002A02+          AGTTTTTGAGGATATGTAAACCTTTTGAAATTTACTTCTAAGGTTGTGCAAGTAAACTT 
JMSF051A11-           AGTTTTTGAGGATATGTAAACCTTTTGAAATTTACTTCTAAGGTTGTGCAAGTAAACTTT
                      ____________________________________________________________
consensus             AGTTTTTGAGGATATGTAAACCTTTTGAAATTTACTTCTAAGGTTGTGCAAGTAAACTTT
 
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JMSF051A11-           AGATTCACTTCTAAGATAGTGATTATTCTATGATATAGGTCATGTTTGGTAAAAAAAAAA
                      ____________________________________________________________
consensus             AGATTCACTTCTAAGATAGTGATTATTCTATGATATAGGTCATGTTTGGTAAAAAAAAAA