Contig 008096:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002A02Sequence250008096 (4)652008096 (4)ref|XP_006436764.1|5e-06hypothetical protein CICLE_v10033202mg [Citrus clementina] ref|XP_006436765.1| h
JMSF051A11Sequence708008096 (4)ref|XP_006436764.1|6e-06hypothetical protein CICLE_v10033202mg [Citrus clementina] ref|XP_006436765.1| h651008096 (4)ref|XP_006436764.1|4e-06hypothetical protein CICLE_v10033202mg [Citrus clementina] ref|XP_006436765.1| h

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF002A02- GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
rJMSF051A11+ GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
rJMSF002A02+ GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
JMSF051A11- GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
                      ____________________________________________________________
consensus GAACGCCATTGTCCCAACGCCGTATTAAAAAACCGACCCGTAAGCCAC
 
. : . : . : . : . : . :
JMSF002A02- TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
rJMSF051A11+ TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
rJMSF002A02+ TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
JMSF051A11- TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
                      ____________________________________________________________
consensus TTTTTAAACACTAGGAGGACATCTGCATTATATGGATAGAGGACTACTTGGGCAGGAGGC
 
. : . : . : . : . : . :
JMSF002A02- AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
rJMSF051A11+ AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
rJMSF002A02+ AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
JMSF051A11- AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
                      ____________________________________________________________
consensus AGCACGGGAGTTGCTCATTGCCATCTCCAACTCTCAACCAGAAAAAGTTGAATCAGATCA
 
. : . : . : . : . : . :
JMSF002A02- GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
rJMSF051A11+ GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
rJMSF002A02+ GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
JMSF051A11- GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
                      ____________________________________________________________
consensus GGAATCAGATCAGGCTGAAAGTTCAAACGGTTGGGAAGCTGGTGCAGTGATTAATGGGGA
 
. : . : . : . : . : . :
JMSF002A02- CAGAACTGAGCTCTTCAGGTCT
rJMSF051A11+ CAGAACTGAGCTCTTCAGGTCTCAACTGATTTCAATTTCGTATCCCCGGGCTCCAAATCC
rJMSF002A02+ CAGAACTGAGCTCTTCAGGTCTCAACTGATTTCAATTTCGTATCCCCGGGCTCCAAATCC
JMSF051A11- CAGAACTGAGCTCTTCAGGTCTCAACTGATTTCAATTTCGTATCCCCGGGCTCCAAATCC
                      ____________________________________________________________
consensus CAGAACTGAGCTCTTCAGGTCTCAACTGATTTCAATTTCGTATCCCCGGGCTCCAAATCC
 
. : . : . : . : . : . :
rJMSF051A11+ TCCAAATGATGGGCCTGTGTGCAATGGCCATGCATGATTGATATGATGGGAGCTAATGTC
rJMSF002A02+ TCCAAATGATGGGCCTGTGTGCAATGGCCATGCATGATTGATATGATGGGAGCTAATGTC
JMSF051A11- TCCAAATGATGGGCCTGTGTGCAATGGCCATGCATGATTGATATGATGGGAGCTAATGTC
                      ____________________________________________________________
consensus TCCAAATGATGGGCCTGTGTGCAATGGCCATGCATGATTGATATGATGGGAGCTAATGTC
 
. : . : . : . : . : . :
rJMSF051A11+ TGCTATGGATGACTGTCAATGAAGCATTTCCATTTCCATTTCCATTTCTGTTGTAGCATC
rJMSF002A02+ TGCTATGGATGACTGTCAATGAAGCATTTCCATTTCCATTTCCATTTCTGTTGTAGCATC
JMSF051A11- TGCTATGGATGACTGTCAATGAAGCATTTCCATTTCCATTTCCATTTCTGTTGTAGCATC
                      ____________________________________________________________
consensus TGCTATGGATGACTGTCAATGAAGCATTTCCATTTCCATTTCCATTTCTGTTGTAGCATC
 
. : . : . : . : . : . :
rJMSF051A11+ TTGAACTTTCTCATGCTCTAGTTATGCTGACCAGAAAGGCGAATACCAAAATGTAGTATT
rJMSF002A02+ TTGAACTTTCTCATGCTCTAGTTATGCTGACCAGAAAGGCGAATACCAAAATGTAGTATT
JMSF051A11- TTGAACTTTCTCATGCTCTAGTTATGCTGACCAGAAAGGCGAATACCAAAATGTAGTATT
                      ____________________________________________________________
consensus TTGAACTTTCTCATGCTCTAGTTATGCTGACCAGAAAGGCGAATACCAAAATGTAGTATT
 
. : . : . : . : . : . :
rJMSF051A11+ GAACTTGCATGTGGATGGATACTTGTAACTTTGTCCATTGTCTCACATAATTCTGTTGAT
rJMSF002A02+ GAACTTGCATGTGGATGGATACTTGTAACTTTGTCCATTGTCTCACATAATTCTGTTGAT
JMSF051A11- GAACTTGCATGTGGATGGATACTTGTAACTTTGTCCATTGTCTCACATAATTCTGTTGAT
                      ____________________________________________________________
consensus GAACTTGCATGTGGATGGATACTTGTAACTTTGTCCATTGTCTCACATAATTCTGTTGAT
 
. : . : . : . : . : . :
rJMSF051A11+ GTCATTTGTATGTTACAGTGCACCATATTTCTCTTGTTAAATCCTTACAGATTCCAGTAT
rJMSF002A02+ GTCATTTGTATGTTACAGTGCACCATATTTCTCTTGTTAAATCCTTACAGATTCCAGTAT
JMSF051A11- GTCATTTGTATGTTACAGTGCACCATATTTCTCTTGTTAAATCCTTACAGATTCCAGTAT
                      ____________________________________________________________
consensus GTCATTTGTATGTTACAGTGCACCATATTTCTCTTGTTAAATCCTTACAGATTCCAGTAT
 
. : . : . : . : . : . :
rJMSF051A11+ AGTTTTTGAGGATATGTAAACCTTTTGAAATTTACTTCTAAGGTTGTGCAAGTAAACTT
rJMSF002A02+ AGTTTTTGAGGATATGTAAACCTTTTGAAATTTACTTCTAAGGTTGTGCAAGTAAACTT
JMSF051A11- AGTTTTTGAGGATATGTAAACCTTTTGAAATTTACTTCTAAGGTTGTGCAAGTAAACTTT
                      ____________________________________________________________
consensus AGTTTTTGAGGATATGTAAACCTTTTGAAATTTACTTCTAAGGTTGTGCAAGTAAACTTT
 
. : . : . : . : . : . :
JMSF051A11- AGATTCACTTCTAAGATAGTGATTATTCTATGATATAGGTCATGTTTGGTAAAAAAAAAA
                      ____________________________________________________________
consensus AGATTCACTTCTAAGATAGTGATTATTCTATGATATAGGTCATGTTTGGTAAAAAAAAAA