Contig 008093:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003C22Sequence222008093 (11)gb|ADZ29096.1|3e-181-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]724001233 (12)gb|ADZ29096.1|6e-1051-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMFF025P04Sequence503008093 (11)gb|ADZ29096.1|4e-821-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]689001233 (12)gb|ADZ29096.1|1e-1081-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMFF036O22Sequence581008093 (11)gb|ADZ29096.1|3e-1021-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]707001233 (12)gb|ADZ29096.1|4e-1011-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMFF049B14Sequence618008093 (11)gb|ADZ29096.1|7e-1101-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]627001233 (12)gb|AFK38815.1|2e-47unknown [Lotus japonicus]
JMFF049C07Sequence481008093 (11)gb|ADZ29096.1|5e-801-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]409001233 (12)
JMFS008C07Sequence614008093 (11)gb|ADZ29096.1|2e-1171-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF009J18Sequence382008093 (11)gb|ADZ29096.1|3e-401-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]687001233 (12)gb|ADZ29096.1|4e-1061-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF016A08Sequence421008093 (11)gb|ADZ29096.1|7e-691-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]745001233 (12)gb|ADZ29096.1|8e-1191-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF026P17Sequence664008093 (11)gb|ADZ29096.1|3e-1281-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]741001233 (12)gb|ADZ29096.1|2e-1171-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF041M18Sequence815008093 (11)gb|ADZ29096.1|4e-1591-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]790001233 (12)gb|ADZ29096.1|1e-1401-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF050N11Sequence652008093 (11)gb|ADZ29096.1|2e-1161-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]770001233 (12)gb|ADZ29096.1|7e-1201-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]

Alignment

This contig is upended


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JMSF041M18+                                    CAATGATGTATTTTCCTGCAAATGATGCAGTAGCA
                      ____________________________________________________________
consensus                                      CAATGATGTATTTTCCTGCAAATGATGCAGTAGCA
 
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JMSF041M18+           ACAGTTTCCTCGTGAGAATATTTACCATGGATAATGGAGGTATATTCTCCCTTCTTGTGC
                      ____________________________________________________________
consensus             ACAGTTTCCTCGTGAGAATATTTACCATGGATAATGGAGGTATATTCTCCCTTCTTGTGC
 
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JMSF026P17+                                          ATGGGCAGGTTGTATCAACTATCTGTACA
JMSF041M18+           TTTTCAACAGAATTCCAAACCTTCGACACCCATGGGCAGGTTGTATCAACTATCTGTACA
                      ____________________________________________________________
consensus             TTTTCAACAGAATTCCAAACCTTCGACACCCATGGGCAGGTTGTATCAACTATCTGTACA
 
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JMFS008C07+                TTCACTCAAAGTCAACATCTCATCCACACTAGCCCCAAAAGCAGGTAAAACCACA
JMSF026P17+           TTCTTTTCACTCAAAGTCAACATCTCATCCACACTAGCCCCAAAAGCAGGTAAAACCACA
JMSF041M18+           TTCTTTTCACTCAAAGTCAACATCTCATCCACTCTAGCCCCAAAAGCAGGTAAAACCACA
JMFF049B14+                                    CATCCACACTAGCCNCAAAAGCAGGTAAAACCACA
JMSF050N11+                   ACTCAAAGTCAACATCTCATCCACACTAGCCCCAAAAGCAGGTAAAACCACA
                      ____________________________________________________________
consensus             TTCTTTTCACTCAAAGTCAACATCTCATCCACACTAGCCCCAAAAGCAGGTAAAACCACA
 
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JMFS008C07+           ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMSF026P17+           ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMSF041M18+           ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMFF049B14+           ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMFF036O22+                        CAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMSF050N11+           ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
                      ____________________________________________________________
consensus             ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
 
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JMFS008C07+           ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
JMSF026P17+           ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
JMSF041M18+           ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
JMFF049B14+           ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGTGGTTGTGTATAATCTCATTAGTGAGC
JMFF049C07+                                                    TATAATCTCATTAGTGAGC
JMFF036O22+           ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
JMFF025P04+                                                 GTGTATAATCTCATTAGTGAGC
JMSF050N11+           ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
                      ____________________________________________________________
consensus             ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
 
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JMFS008C07+           CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMSF026P17+           CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMSF041M18+           CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMFF049B14+           CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMFF049C07+           CAAATGTNTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMSF016A08+                                         GCTTCATATGCAATCTGGACGGCTCGCTCA
JMFF036O22+           CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMFF025P04+           CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMSF050N11+           CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
                      ____________________________________________________________
consensus             CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
 
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JMFS008C07+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF026P17+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF041M18+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMFF049B14+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMFF049C07+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF016A08+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF009J18+                                   TCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMFF036O22+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMFF025P04+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF050N11+           ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
                      ____________________________________________________________
consensus             ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
 
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JMFS008C07+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF026P17+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF041M18+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMFF049B14+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMFF049C07+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF016A08+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF009J18+           TCATAGCCATTGTCCTTCAACTT-TTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMFF036O22+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMFF025P04+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF050N11+           TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
                      ____________________________________________________________
consensus             TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
 
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JMFS008C07+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF026P17+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF041M18+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMFF049B14+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMFF049C07+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF016A08+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF009J18+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMFF003C22+                                                           CTTCTAGTCAAG
JMFF036O22+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMFF025P04+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF050N11+           TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
                      ____________________________________________________________
consensus             TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
 
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JMFS008C07+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF026P17+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF041M18+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF049B14+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF049C07+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF016A08+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF009J18+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF003C22+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF036O22+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF025P04+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF050N11+           TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
                      ____________________________________________________________
consensus             TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
 
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JMFS008C07+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF026P17+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF041M18+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF049B14+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF049C07+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF016A08+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF009J18+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF003C22+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF036O22+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF025P04+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF050N11+           GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
                      ____________________________________________________________
consensus             GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
 
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JMFS008C07+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF026P17+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF041M18+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF049B14+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF049C07+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF016A08+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF009J18+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF003C22+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF036O22+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF025P04+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF050N11+           GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
                      ____________________________________________________________
consensus             GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
 
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JMFS008C07+           ATTTCTGTAGACAGAGAAA                                         
JMSF026P17+           ATTTCTGTAGACAGAGAAATGAGAAGTC                                
JMSF041M18+           ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGGTCTT      
JMFF049B14+           ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGT                  
JMFF049C07+           ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGT                  
JMSF016A08+           ATTTCTGTAGACAGAGAAATGAGAAGTCGC                              
JMSF009J18+           ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGT              
JMFF003C22+           ATTTCTGTAGACAGAGAAATGAGAAGTCGC                              
JMFF036O22+           ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGG          
JMFF025P04+           ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGG          
JMSF050N11+           ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGGTCTTAGTTCC
                      ____________________________________________________________
consensus             ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGGTCTTAGTTCC