Contig 008092:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027H08Sequence576008092 (2)ref|XP_009598407.1|5e-118PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana tomentosiformis]747009710 (7)ref|XP_009760191.1|9e-55PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris]
JMSF050M12Sequence697008092 (2)gb|KDO57886.1|2e-154hypothetical protein CISIN_1g006786mg [Citrus sinensis]768011147 (11)ref|XP_009598407.1|4e-69PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF027H08+ ACACAAGCAGAATAACTACGTCCATT
                      ____________________________________________________________
consensus ACACAAGCAGAATAACTACGTCCATT
 
. : . : . : . : . : . :
JMFF027H08+ TCGAGTTTCATGCCAACAGCCTCCATGATTCAGTTTGCATCGGCCTGGTCCACTTGGCTT
                      ____________________________________________________________
consensus TCGAGTTTCATGCCAACAGCCTCCATGATTCAGTTTGCATCGGCCTGGTCCACTTGGCTT
 
. : . : . : . : . : . :
JMFF027H08+ GCAAGAACTGTAGCCATCTCCTTTGAACTGCACACCATCAACCGTGGGGCATTCACAGAC
JMSF050M12+ AACTGCACACCATCAACCAAGGGGCACTCGCACAC
                      ____________________________________________________________
consensus GCAAGAACTGTAGCCATCTCCTTTGAACTGCACACCATCAACCGTGGGGCATTCGCAGAC
 
. : . : . : . : . : . :
JMFF027H08+ TCTTCCACGAAATGTATCCTTGCATGCTGTAATATTGGCTGATTTGTCTTGCCAGCAGCC
JMSF050M12+ TCTTCCCCGGAAAGTATCCTTGCAGGCTGTAATGTTGGCAGTTTCGTCTTGCCAGCAGCC
                      ____________________________________________________________
consensus TCTTCCCCGGAATGTATCCTTGCATGCTGTAATGTTGGCTGTTTTGTCTTGCCAGCAGCC
 
. : . : . : . : . : . :
JMFF027H08+ ACCATTATTGTCTAAGCACTCATTTGTCTCTAAATCATCACTCAAACAAACTACAGGCTC
JMSF050M12+ GCCATTGTGGTCTAAGCACTCATTTGTCTCCATTTCTCCATTAAGGCAAACTGCAGGCTC
                      ____________________________________________________________
consensus GCCATTGTTGTCTAAGCACTCATTTGTCTCTATTTCTTCATTCAGGCAAACTGCAGGCTC
 
. : . : . : . : . : . :
JMFF027H08+ TGTGGTTTCCTCAAAGCCAGCACAAATAGCCTTTAAAACAGCACCTTTCTCCAACTTCCC
JMSF050M12+ GGTAGTTTCCTCAAAACCAGCACAAATTGCCTTTAATACAGCACCTTTTGCCAACTTCCC
                      ____________________________________________________________
consensus TGTGGTTTCCTCAAAGCCAGCACAAATTGCCTTTAATACAGCACCTTTTTCCAACTTCCC
 
. : . : . : . : . : . :
JMFF027H08+ TCGGTATTGTCAGTTATTGACAACAAGGGTGGGCAATATAGTGACATCACCTCGCGATCC
JMSF050M12+ TCGGTACTGCCTATTGTTGACAACAAGGGTGGGCAATATGGTGACATCACCTCGTGATCC
                      ____________________________________________________________
consensus TCGGTATTGTCTGTTGTTGACAACAAGGGTGGGCAATATGGTGACATCACCTCGTGATCC
 
. : . : . : . : . : . :
JMFF027H08+ TTTACCAAGTTGAGCATCTTGCTCTTCTTTCAAAACAGGATTGTCAGCATCAGCACTAGG
JMSF050M12+ TTTACCAATTTGAGCATCTTGCTCTTCTTTCAAAACAGGATTATCAGCATCAGCATTGGG
                      ____________________________________________________________
consensus TTTACCAATTTGAGCATCTTGCTCTTCTTTCAAAACAGGATTGTCAGCATCAGCATTGGG
 
. : . : . : . : . : . :
JMFF027H08+ GTCTCCCATACACTTTTCAATCCCTTTCAAATCAAGACCTAAGGACTTGATGACTTCATC
JMSF050M12+ GTCTCCCATACAGTTCTCAATCTTTTTCAGATCAAGACCTAAAGAGTTGATGACACCATC
                      ____________________________________________________________
consensus GTCTCCCATACAGTTTTCAATCTTTTTCAGATCAAGACCTAAGGAGTTGATGACTTCATC
 
. : . : . : . : . : . :
JMFF027H08+ AGCACATTCCTTGTTATATTTCTTCTCTTTCATGGGACATCGAATTTGGAAATCAGTCAC
JMSF050M12+ AGCACATTCCTTGTTATATTTCTTATCTTTCATGGGGCAGCGGATTTGGAAATCAGTCAC
                      ____________________________________________________________
consensus AGCACATTCCTTGTTATATTTCTTCTCTTTCATGGGGCATCGGATTTGGAAATCAGTCAC
 
. : . : . : . : . : . :
JMFF027H08+ GTAATCCCAC
JMSF050M12+ ATAATCCCACCAAATCCATGGCTTTTTGGTCTCTTTGGCAACTTTAAAGACACAAAGTTG
                      ____________________________________________________________
consensus GTAATCCCACCAAATCCATGGCTTTTTGGTCTCTTTGGCAACTTTAAAGACACAAAGTTG
 
. : . : . : . : . : . :
JMSF050M12+ CCTTAAATTTTCAATAACAACATCCTTCCCATCATAACCCGAGCTAAAATCCTGTTCAGG
                      ____________________________________________________________
consensus CCTTAAATTTTCAATAACAACATCCTTCCCATCATAACCCGAGCTAAAATCCTGTTCAGG
 
. : . : . : . : . : . :
JMSF050M12+ ATCAGGAGCACAATATCTCCCGTGATTAATGCATTGCTGCTTGCATTGTCTGCTTACTGT
                      ____________________________________________________________
consensus ATCAGGAGCACAATATCTCCCGTGATTAATGCATTGCTGCTTGCATTGTCTGCTTACTGT
 
. : . : . : . : . : . :
JMSF050M12+ AAATGCCTGAGGACAATACCAAGTTATATAGTGAGGTGTGAATTCAGTGTAGCCACCTTT
                      ____________________________________________________________
consensus AAATGCCTGAGGACAATACCAAGTTATATAGTGAGGTGTGAATTCAGTGTAGCCACCTTT