Contig 008090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005D02Sequence372008090 (3)
JMSF039L02Sequence658008090 (3)ref|XP_003516943.1|181PREDICTED: uncharacterized protein LOC100780899 [Glycine max]847002945 (3)gb|KJB17031.1|7e-103hypothetical protein B456_002G261700 [Gossypium raimondii] gb|KJB17035.1| hypoth
JMSF050F09Sequence677008090 (3)ref|XP_003516943.1|174PREDICTED: uncharacterized protein LOC100780899 [Glycine max]738002945 (3)gb|KJB17031.1|7e-97hypothetical protein B456_002G261700 [Gossypium raimondii] gb|KJB17035.1| hypoth

Alignment

This contig is upended


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JMSF039L02+                                                          CTGAGATTATTCT
                      ____________________________________________________________
consensus                                                            CTGAGATTATTCT
 
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JMSF039L02+           TGGGCTGAGAGCCAATGAAAGGGGCACTTTGTTGTACCAAGGGCAGGGAAAGCTCCGAGA
JMSF050F09+            GGGCTGAGAGCCAATGAAAGGGGCACTTTGTTGTACCAAGGGCAGGGAAAGCTCCGAGA
                      ____________________________________________________________
consensus             TGGGCTGAGAGCCAATGAAAGGGGCACTTTGTTGTACCAAGGGCAGGGAAAGCTCCGAGA
 
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JMSF039L02+           CCCTATCAATTTTGCTCCATAAAATTCTTCGGGCACCCCTTCATGAGTTGTCACAACCAT
JMSF050F09+           CCCTATCAATTTTGCTCCATAAAATTCTTCGGGCACCCCTTCATGAGTTGTCACAACCAT
                      ____________________________________________________________
consensus             CCCTATCAATTTTGCTCCATAAAATTCTTCGGGCACCCCTTCATGAGTTGTCACAACCAT
 
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JMSF039L02+           AACCTCATCTCCCATTTCCCGCAGATACTTGATGAAATTCTGGAACCGGTTCTTATATCC
JMSF050F09+           AACCTCATCTCCCATTTCCCGCAGATACTTGATGAAATTCTGGAACCGGTTCTTATATCC
                      ____________________________________________________________
consensus             AACCTCATCTCCCATTTCCCGCAGATACTTGATGAAATTCTGGAACCGGTTCTTATATCC
 
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JMSF039L02+           AGACACATAAGCGAAAGGGGAGGGCTCAACAAAGAGAGCAATGCGTCTAGGTTTTGAAGT
JMSF050F09+           AGACACATAAGCGAAAGGGGAGGGCTCAACAAAGAGAGCAATGCGTCTAGGTTTTGAAGT
                      ____________________________________________________________
consensus             AGACACATAAGCGAAAGGGGAGGGCTCAACAAAGAGAGCAATGCGTCTAGGTTTTGAAGT
 
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JMSF039L02+           CACCTCTGATTCAATCACGGGAGGAGGGCTCTCCTCCTCTTCTTCTCTGTACTCTGTAAT
JMSF005D02+                                                       CTCTGTACTCTGTAAT
JMSF050F09+           CACCTCTGATTCAATCACGGGAGGAGGGCTCTCCTCCTCTTCTTCTCTGTACTCTGTAAT
                      ____________________________________________________________
consensus             CACCTCTGATTCAATCACGGGAGGAGGGCTCTCCTCCTCTTCTTCTCTGTACTCTGTAAT
 
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JMSF039L02+           GGTCATATTGCTAGAGGCGGCAACAAAGAAGGGTCTTTGCCTATTCTTCAAAGACCCAGA
JMSF005D02+           GGTCATATTGCTAGAGGCGGCAACAAAGAAGGGTCTTTGCCTATTCTTCAAAGACCCAGA
JMSF050F09+           GGTCATATTGCTAGAGGCGGCAACAAAGAAGGGTCTTTGCCTATTCTTCAAAGACCCAGA
                      ____________________________________________________________
consensus             GGTCATATTGCTAGAGGCGGCAACAAAGAAGGGTCTTTGCCTATTCTTCAAAGACCCAGA
 
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JMSF039L02+           CTTTATGCAAAAGGGTTTTGCTCTTGAAGCAGAAAAGCAAGAAAATTTAAGGGAATGGGT
JMSF005D02+           CTTTATGCAAAAGGGTTTTGCTCTTGAAGCAGAAAAGCAAGAAAATTTAAGGGAATGGGT
JMSF050F09+           CTTTATGCAAAAGGGTTTTGCTCTTGAAGCAGAAAAGCAAGAAAATTTAAGGGAATGGGT
                      ____________________________________________________________
consensus             CTTTATGCAAAAGGGTTTTGCTCTTGAAGCAGAAAAGCAAGAAAATTTAAGGGAATGGGT
 
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JMSF039L02+           AGGTATAGATAAAGAACATGAAGAAGAAGCCGAAGAAGAAGAAGAGGTAGATTGGGAACA
JMSF005D02+           AGGTATAGATAAAGAACATGAAGAAGAAGCCGAAGAAGAAGAAGAGGTAGATTGGGAACA
JMSF050F09+           AGGTATAGATAAAGAACATGAAGAAGAAGCCGAAGAAGAAGAAGAGGTAGATTGGGAACA
                      ____________________________________________________________
consensus             AGGTATAGATAAAGAACATGAAGAAGAAGCCGAAGAAGAAGAAGAGGTAGATTGGGAACA
 
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JMSF039L02+           GAAAGGGGAAGAGAAAGAAGGATTTACATACAGAGAAGCGGACATGATGGTGGGTTGTCT
JMSF005D02+           GAAAGGGGAAGAGAAAGAAGGATTTACATACAGAGAAGCGGACATGATGGTGGGTTGTCT
JMSF050F09+           GAAAGGGGAAGAGAAAGAAGGATTTACATACAGAGAAGCGGACATGATGGTGGGTTGTCT
                      ____________________________________________________________
consensus             GAAAGGGGAAGAGAAAGAAGGATTTACATACAGAGAAGCGGACATGATGGTGGGTTGTCT
 
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JMSF039L02+           GAATGGTGTTAAATATAAAGTAGTATATCAACTAGTGAAATGTTGGAGAAGAGACCGGCT
JMSF005D02+           GAATGGTGTTAAATATAAAGTAGTATATCAACTAGTGAAATGTTGGAGAAGAGACCGGCT
JMSF050F09+           GAATGGTGTTAAATATAAAGTAGTATATCAACTAGTGAAATGTTGGAGAAGAGACCGGCT
                      ____________________________________________________________
consensus             GAATGGTGTTAAATATAAAGTAGTATATCAACTAGTGAAATGTTGGAGAAGAGACCGGCT
 
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JMSF039L02+           CTGAGGGGCCATGGAAGGGACTCTCCGAATGGATATTCTCTTAC                
JMSF005D02+           CTGAGGGGCCATGGAAGGGACTCTCCGAATGGATATTCTCTTACAGAGGGGGTG      
JMSF050F09+           CTGAGGGGCCATGGAAGGGACTCTCCGAATGGATATTCTCTTACAGAGGGGGTGCAAACC
                      ____________________________________________________________
consensus             CTGAGGGGCCATGGAAGGGACTCTCCGAATGGATATTCTCTTACAGAGGGGGTGCAAACC