Contig 008089:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022H12Sequence597008089 (2)ref|XP_009783626.1|3e-06PREDICTED: uncharacterized protein LOC104232187 isoform X2 [Nicotiana sylvestri810018204
JMSF050E18Sequence637008089 (2)ref|XP_009783626.1|2e-04PREDICTED: uncharacterized protein LOC104232187 isoform X2 [Nicotiana sylvestri750023652ref|XP_009783625.1|7e-76PREDICTED: uncharacterized protein LOC104232187 isoform X1 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF022H12+                     ACACGAAACTCTCCTCCTCACTCCACGCCCCCCTCGAGCTCCCTCCACCT
JMSF050E18+                                  CTCCTCACTCCACGCCCCCCTCGAGCTCCCTCCACCT
                      ____________________________________________________________
consensus                       ACACGAAACTCTCCTCCTCACTCCACGCCCCCCTCGAGCTCCCTCCACCT
 
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JMSF022H12+           CGCGTAGTTCCTTGTAAATTTCCCACGGC-ACGAGGGGCAAACTCGTAATTTGACGCTAA
JMSF050E18+           CGCGTAGTTCCTTGTAAATTTCCCACGGCAACGAGGGGCAAACTCGTAATTTGACGCTAA
                      ____________________________________________________________
consensus             CGCGTAGTTCCTTGTAAATTTCCCACGGCAACGAGGGGCAAACTCGTAATTTGACGCTAA
 
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JMSF022H12+           AGACTCCATCTTTCTTTTCTTCTTGTTCCTGAAATCATACCCATTCTCAGCCCCCCCGTT
JMSF050E18+           AGACTCCATCTTTCTTTTCTTCTTGTTCCTGAAATCATACCCATTCTCAGCCCCCCCGTT
                      ____________________________________________________________
consensus             AGACTCCATCTTTCTTTTCTTCTTGTTCCTGAAATCATACCCATTCTCAGCCCCCCCGTT
 
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JMSF022H12+           GAATTCCGGATCATCTTCTCCTTCATCAGACTCTTCAGTATCATCGTATTCATATTCGTT
JMSF050E18+           GAATTCCGGATCATCTTCTCCTTCATCAGACTCTTCAGTATCATCGTATTCATATTCGTT
                      ____________________________________________________________
consensus             GAATTCCGGATCATCTTCTCCTTCATCAGACTCTTCAGTATCATCGTATTCATATTCGTT
 
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JMSF022H12+           CTTGTATCTACTATAATGGGTGTCTTTAGGATAAGAGCTAGGGTTCCTAATTGGGCGTCT
JMSF050E18+           CTTGTATCTACTATAATGGGTGTCTTTAGGATAAGAGCTAGGGTTCCTAATTGGGCGTCT
                      ____________________________________________________________
consensus             CTTGTATCTACTATAATGGGTGTCTTTAGGATAAGAGCTAGGGTTCCTAATTGGGCGTCT
 
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JMSF022H12+           CGATCGAGAAGAAAAGCTGTAAACAGAAGTGGGTTTTTGTGAGTACCTTCCTTCATCATC
JMSF050E18+           CGATCGAGAAGAAAAGCTGTAAACAGAAGTGGGTTTTTGTGAGTACCTTCCTTCATCATC
                      ____________________________________________________________
consensus             CGATCGAGAAGAAAAGCTGTAAACAGAAGTGGGTTTTTGTGAGTACCTTCCTTCATCATC
 
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JMSF022H12+           AGAATCATCCATATCTTCGGAATATCTTCTCCCCGCCAGCTCGAACCTCTTTCTTTATAT
JMSF050E18+           AGAATCATCCATATCTTCGGAATATCTTCTCCCCGCCAGCTCGAACCTCTTTCTTTATAT
                      ____________________________________________________________
consensus             AGAATCATCCATATCTTCGGAATATCTTCTCCCCGCCAGCTCGAACCTCTTTCTTTATAT
 
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JMSF022H12+           CTATATAAATAAATTGGGTTTTTTCCCCCCTTATTCTTGACAGAAAATTGGAGAACTTTA
JMSF050E18+           CTATATAAATAAATTGGGTTTTTTCCCCCCTTATTCTTGACAGAAAATTGGAGAACTTTA
                      ____________________________________________________________
consensus             CTATATAAATAAATTGGGTTTTTTCCCCCCTTATTCTTGACAGAAAATTGGAGAACTTTA
 
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JMSF022H12+           TTGTTGAAAACCAAAATTAGAGGCGAAATTGATATGGGTTTGAAGGAAACTTCAAAATAA
JMSF050E18+           TTGTTGAAAACCAAAATTAGAGGCGAAATTGATATGGGTTTGAAGGAAACTTCAAAATAA
                      ____________________________________________________________
consensus             TTGTTGAAAACCAAAATTAGAGGCGAAATTGATATGGGTTTGAAGGAAACTTCAAAATAA
 
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JMSF022H12+           GAAAGGGAAAAATGAAAGGAATTACAGACCTTGGAGCTCTGATCTCGGAGATTAGGGTTT
JMSF050E18+           GAAAGGGAAAAATGAAAGGAATTACAGACCTTGGAGCTCTGATCTCGGAGATTAGGGTTT
                      ____________________________________________________________
consensus             GAAAGGGAAAAATGAAAGGAATTACAGACCTTGGAGCTCTGATCTCGGAGATTAGGGTTT
 
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JMSF022H12+           TGATAGT                                                     
JMSF050E18+           TGATAGTGGAAGAAAAGAGGGGAGATTGGGAACTGAGGTGTCAAAGAGTTCTCAGAGATC
                      ____________________________________________________________
consensus             TGATAGTGGAAGAAAAGAGGGGAGATTGGGAACTGAGGTGTCAAAGAGTTCTCAGAGATC